Rmu_sc0004413.1_g000038

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004413.1
OG0000090
Physical Location & Seq
Forward (+)
171615 .. 173841
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004413.1_g000038.1.cds

Sequence Viewer

Length: 639 bp
atggacaaggttcaaaagctccctgagaccgttcaagccaatgctatgtttgttaacgagattgggtcattcacatgcaaattagctctattcaaattcaaatggtggataaaagtacctaaggaggccaagaatgacatcaaagaggctctgacaattaatttcgagtttgattggaccgatcgggagctgaggatatttgtggagaagaagatggccaatgcatttggatcttggagatccaagtttcatcgacattttaaaaagtatgctcatgatttagaatatgctcgagcacacccaccgggagaaaagctatttggtgaaagatcaatagatgaatgggagtggctttgtgacgagttgttcatagatgaaacctatgtgaggaattcgcggtctgggctatggtcgagatctgagagtgataaatctgcaaatgcttttgtgacagaacaaaatgtgattaagctgacaaccacggtggaaaagcttttaaggcatatcaatcacatagaagagcaacttgctactgttgaagggtatactattcaacattctagtgatgatgatgattatgatgatgggaatgatgatgatgtgaatatctatggggatgaagatgagggtgcaggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

212

Amino Acids

24.82

Weight (kDa)

4.95

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 545
AccII CGCG 1 cut(s) 397
AciI CCGC 1 cut(s) 397
AclWI GGATC 2 cut(s) 234, 238
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 2 cut(s) 95, 391
AfaI GTAC 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 6 cut(s) 14, 35, 94, 100, 539, 554
AjuI GAANNNNNNNTTGG 2 cut(s) 303, 335
AluBI AGCT 6 cut(s) 19, 86, 190, 316, 472, 493
AluI AGCT 6 cut(s) 19, 86, 190, 316, 472, 493
Alw21I GWGCWC 1 cut(s) 298
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 2 cut(s) 234, 238
Ama87I CYCGRG 1 cut(s) 291
AoxI GGCC 2 cut(s) 126, 216
ApoI RAATTY 2 cut(s) 95, 391
AseI ATTAAT 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 177
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 335
AvaI CYCGRG 1 cut(s) 291
AvaII GGWCC 1 cut(s) 177
AxyI CCTNAGG 1 cut(s) 120
BalI TGGCCA 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 298
BbvCI CCTCAGC 1 cut(s) 191
BccI CCATC 2 cut(s) 208, 578
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 2 cut(s) 561, 637
BglII AGATCT 1 cut(s) 416
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 177
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 191
BpuMI CCSGG 1 cut(s) 306
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 480
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse21I CCTNAGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 622
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMII CTCAG 3 cut(s) 15, 182, 411
Bsh1236I CGCG 1 cut(s) 397
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 2 cut(s) 128, 218
BsiEI CGRYCG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 2 cut(s) 128, 218
Bso31I GGTCTC 1 cut(s) 20
BsoBI CYCGRG 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 5 cut(s) 181, 230, 239, 329, 416
BspACI CCGC 1 cut(s) 397
BspANI GGCC 2 cut(s) 128, 218
BspCNI CTCAG 3 cut(s) 16, 183, 412
BspFNI CGCG 1 cut(s) 397
BspHI TCATGA 1 cut(s) 274
BspPI GGATC 2 cut(s) 234, 238
BspQI GCTCTTC 1 cut(s) 513
BspTNI GGTCTC 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 5 cut(s) 181, 230, 239, 329, 416
BssNAI GTATAC 1 cut(s) 546
Bst1107I GTATAC 1 cut(s) 546
Bst4CI ACNGT 3 cut(s) 31, 484, 535
Bst6I CTCTTC 1 cut(s) 513
BstC8I GCNNGC 1 cut(s) 634
BstDEI CTNAG 4 cut(s) 24, 120, 191, 420
BstDSI CCRYGG 1 cut(s) 480
BstENI CCTNNNNNAGG 1 cut(s) 385
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 397
BstKTI GATC 5 cut(s) 184, 233, 242, 332, 419
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 5 cut(s) 181, 230, 239, 329, 416
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 403, 499
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 304
BstUI CGCG 1 cut(s) 397
BstX2I RGATCY 3 cut(s) 230, 239, 416
BstYI RGATCY 3 cut(s) 230, 239, 416
BstZ17I GTATAC 1 cut(s) 546
Bsu36I CCTNAGG 1 cut(s) 120
BsuRI GGCC 2 cut(s) 128, 218
BtgI CCRYGG 1 cut(s) 480
BtsCI GGATG 1 cut(s) 622
Cac8I GCNNGC 1 cut(s) 634
CciI TCATGA 1 cut(s) 274
Cfr13I GGNCC 1 cut(s) 177
Csp6I GTAC 1 cut(s) 116
CspCI CAANNNNNGTGG 2 cut(s) 465, 500
CviAII CATG 2 cut(s) 75, 275
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 4 cut(s) 24, 120, 191, 420
DpnI GATC 5 cut(s) 183, 232, 241, 331, 418
DpnII GATC 5 cut(s) 181, 230, 239, 329, 416
DraI TTTAAA 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 177
Eco81I CCTNAGG 1 cut(s) 120
Eco88I CYCGRG 1 cut(s) 291
EcoNI CCTNNNNNAGG 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 391
EcoT22I ATGCAT 1 cut(s) 226
FaeI CATG 2 cut(s) 78, 278
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FatI CATG 2 cut(s) 74, 274
FblI GTMKAC 1 cut(s) 545
FokI GGATG 1 cut(s) 629
FspBI CTAG 2 cut(s) 561, 637
HaeIII GGCC 2 cut(s) 128, 218
HapII CCGG 1 cut(s) 305
Hin1II CATG 2 cut(s) 78, 278
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 491
HpaI GTTAAC 1 cut(s) 55
HpaII CCGG 1 cut(s) 305
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 2 cut(s) 55, 546
Hpy188I TCNGA 2 cut(s) 153, 421
Hpy188III TCNNGA 3 cut(s) 185, 275, 414
Hpy8I GTNNAC 2 cut(s) 55, 546
HpyAV CCTTC 1 cut(s) 533
HpyCH4III ACNGT 3 cut(s) 31, 484, 535
HpyCH4V TGCA 4 cut(s) 78, 224, 437, 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 403, 499
HpyF3I CTNAG 4 cut(s) 24, 120, 191, 420
Hsp92II CATG 2 cut(s) 78, 278
KspAI GTTAAC 1 cut(s) 55
Kzo9I GATC 5 cut(s) 181, 230, 239, 329, 416
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 2 cut(s) 24, 187
LpnPI CCDG 4 cut(s) 36, 318, 387, 618
MaeI CTAG 2 cut(s) 561, 637
MaeIII GTNAC 2 cut(s) 356, 448
MalI GATC 5 cut(s) 183, 232, 241, 331, 418
MboI GATC 5 cut(s) 181, 230, 239, 329, 416
MboII GAAGA 4 cut(s) 220, 223, 530, 632
MflI RGATCY 3 cut(s) 230, 239, 416
MhlI GDGCHC 1 cut(s) 298
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 5 cut(s) 80, 95, 156, 160, 391
MluNI TGGCCA 1 cut(s) 218
MnlI CCTC 5 cut(s) 118, 139, 186, 381, 619
Mox20I TGGCCA 1 cut(s) 218
Mph1103I ATGCAT 1 cut(s) 226
MscI TGGCCA 1 cut(s) 218
MseI TTAA 5 cut(s) 54, 159, 261, 468, 497
MslI CAYNNNNRTG 2 cut(s) 73, 561
Msp20I TGGCCA 1 cut(s) 218
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 397
MwoI GCNNNNNNNGC 2 cut(s) 403, 499
NciI CCSGG 1 cut(s) 306
NdeII GATC 5 cut(s) 181, 230, 239, 329, 416
NlaIII CATG 2 cut(s) 78, 278
NmuCI GTSAC 2 cut(s) 356, 448
NsiI ATGCAT 1 cut(s) 226
NspI RCATGY 1 cut(s) 78
PaeR7I CTCGAG 1 cut(s) 291
PagI TCATGA 1 cut(s) 274
PciSI GCTCTTC 1 cut(s) 513
Ple19I CGATCG 1 cut(s) 184
PshBI ATTAAT 1 cut(s) 159
PspPI GGNCC 1 cut(s) 177
PspXI VCTCGAGB 1 cut(s) 291
PsuI RGATCY 3 cut(s) 230, 239, 416
PvuI CGATCG 1 cut(s) 184
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
RseI CAYNNNNRTG 2 cut(s) 73, 561
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 5 cut(s) 54, 159, 261, 468, 497
Sau3AI GATC 5 cut(s) 181, 230, 239, 329, 416
Sau96I GGNCC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 1 cut(s) 298
SetI ASST 9 cut(s) 12, 21, 88, 121, 192, 318, 383, 474, 495
Sfr274I CTCGAG 1 cut(s) 291
SinI GGWCC 1 cut(s) 177
SlaI CTCGAG 1 cut(s) 291
SmiMI CAYNNNNRTG 2 cut(s) 73, 561
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 5 cut(s) 80, 95, 156, 160, 391
SsiI CCGC 1 cut(s) 397
SspMI CTAG 2 cut(s) 561, 637
StyD4I CCNGG 1 cut(s) 304
TaaI ACNGT 3 cut(s) 31, 484, 535
TaqI TCGA 4 cut(s) 165, 253, 292, 413
TaqII GACCGA 1 cut(s) 194
TasI AATT 5 cut(s) 80, 95, 156, 160, 391
Tru1I TTAA 5 cut(s) 54, 159, 261, 468, 497
Tru9I TTAA 5 cut(s) 54, 159, 261, 468, 497
TseFI GTSAC 2 cut(s) 356, 448
Tsp45I GTSAC 2 cut(s) 356, 448
TspDTI ATGAA 5 cut(s) 239, 354, 358, 390, 633
VpaK11BI GGWCC 1 cut(s) 177
VspI ATTAAT 1 cut(s) 159
XagI CCTNNNNNAGG 1 cut(s) 385
XapI RAATTY 2 cut(s) 95, 391
XceI RCATGY 1 cut(s) 78
XhoI CTCGAG 1 cut(s) 291
XmiI GTMKAC 1 cut(s) 545
XspI CTAG 2 cut(s) 561, 637
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.