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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 642 |
| AclWI | GGATC | 1 cut(s) | 98 |
| AcoI | YGGCCR | 1 cut(s) | 286 |
| AcsI | RAATTY | 3 cut(s) | 84, 463, 601 |
| AcvI | CACGTG | 1 cut(s) | 497 |
| AfaI | GTAC | 2 cut(s) | 631, 768 |
| AflIII | ACRYGT | 1 cut(s) | 494 |
| AgsI | TTSAA | 8 cut(s) | 190, 214, 229, 419, 487, 606, 662, 700 |
| AjnI | CCWGG | 3 cut(s) | 30, 235, 573 |
| AluBI | AGCT | 6 cut(s) | 56, 344, 352, 449, 647, 685 |
| AluI | AGCT | 6 cut(s) | 56, 344, 352, 449, 647, 685 |
| Alw26I | GTCTC | 1 cut(s) | 613 |
| AlwI | GGATC | 1 cut(s) | 98 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 31 |
| AoxI | GGCC | 2 cut(s) | 42, 286 |
| ApeKI | GCWGC | 2 cut(s) | 56, 389 |
| ApoI | RAATTY | 3 cut(s) | 84, 463, 601 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 704 |
| AspLEI | GCGC | 1 cut(s) | 30 |
| AspS9I | GGNCC | 1 cut(s) | 239 |
| AsuNHI | GCTAGC | 1 cut(s) | 536 |
| AvaII | GGWCC | 1 cut(s) | 239 |
| BbrPI | CACGTG | 1 cut(s) | 497 |
| BbsI | GAAGAC | 1 cut(s) | 813 |
| BbvI | GCAGC | 2 cut(s) | 43, 401 |
| BccI | CCATC | 1 cut(s) | 340 |
| BciT130I | CCWGG | 3 cut(s) | 32, 237, 575 |
| BclI | TGATCA | 1 cut(s) | 433 |
| BcoDI | GTCTC | 1 cut(s) | 613 |
| BfaI | CTAG | 3 cut(s) | 510, 537, 609 |
| BfmI | CTRYAG | 1 cut(s) | 444 |
| BfoI | RGCGCY | 1 cut(s) | 31 |
| BisI | GCNGC | 2 cut(s) | 57, 390 |
| BlsI | GCNGC | 2 cut(s) | 58, 391 |
| Bme1390I | CCNGG | 3 cut(s) | 32, 237, 575 |
| Bme18I | GGWCC | 1 cut(s) | 239 |
| BmgT120I | GGNCC | 1 cut(s) | 239 |
| BmrFI | CCNGG | 3 cut(s) | 32, 237, 575 |
| BmsI | GCATC | 2 cut(s) | 31, 643 |
| BmtI | GCTAGC | 1 cut(s) | 540 |
| BpiI | GAAGAC | 1 cut(s) | 813 |
| Bsa29I | ATCGAT | 1 cut(s) | 93 |
| BsaAI | YACGTR | 1 cut(s) | 497 |
| BsaBI | GATNNNNATC | 1 cut(s) | 438 |
| BsaJI | CCNNGG | 2 cut(s) | 289, 721 |
| BsaWI | WCCGGW | 1 cut(s) | 220 |
| Bse3DI | GCAATG | 1 cut(s) | 547 |
| Bse8I | GATNNNNATC | 1 cut(s) | 438 |
| BseBI | CCWGG | 3 cut(s) | 32, 237, 575 |
| BseCI | ATCGAT | 1 cut(s) | 93 |
| BseDI | CCNNGG | 2 cut(s) | 289, 721 |
| BseGI | GGATG | 4 cut(s) | 12, 248, 332, 439 |
| BseJI | GATNNNNATC | 1 cut(s) | 438 |
| BseMI | GCAATG | 1 cut(s) | 547 |
| BseMII | CTCAG | 3 cut(s) | 111, 362, 362 |
| BseXI | GCAGC | 2 cut(s) | 43, 401 |
| BshFI | GGCC | 2 cut(s) | 44, 288 |
| BshVI | ATCGAT | 1 cut(s) | 93 |
| BsiSI | CCGG | 1 cut(s) | 221 |
| BsmAI | GTCTC | 1 cut(s) | 613 |
| BsnI | GGCC | 2 cut(s) | 44, 288 |
| Bsp143I | GATC | 4 cut(s) | 79, 90, 94, 433 |
| BspACI | CCGC | 1 cut(s) | 642 |
| BspANI | GGCC | 2 cut(s) | 44, 288 |
| BspCNI | CTCAG | 3 cut(s) | 112, 361, 363 |
| BspDI | ATCGAT | 1 cut(s) | 93 |
| BspOI | GCTAGC | 1 cut(s) | 540 |
| BspPI | GGATC | 1 cut(s) | 98 |
| BspQI | GCTCTTC | 1 cut(s) | 414 |
| BsrDI | GCAATG | 1 cut(s) | 547 |
| BssECI | CCNNGG | 2 cut(s) | 289, 721 |
| BssMI | GATC | 4 cut(s) | 79, 90, 94, 433 |
| BssT1I | CCWWGG | 1 cut(s) | 721 |
| Bst2UI | CCWGG | 3 cut(s) | 32, 237, 575 |
| Bst4CI | ACNGT | 2 cut(s) | 776, 812 |
| Bst6I | CTCTTC | 2 cut(s) | 414, 793 |
| BstBAI | YACGTR | 1 cut(s) | 497 |
| BstC8I | GCNNGC | 2 cut(s) | 312, 538 |
| BstDEI | CTNAG | 3 cut(s) | 120, 348, 371 |
| BstF5I | GGATG | 4 cut(s) | 12, 248, 332, 439 |
| BstH2I | RGCGCY | 1 cut(s) | 31 |
| BstHHI | GCGC | 1 cut(s) | 30 |
| BstKTI | GATC | 4 cut(s) | 82, 93, 97, 436 |
| BstMAI | GTCTC | 1 cut(s) | 613 |
| BstMBI | GATC | 4 cut(s) | 79, 90, 94, 433 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 41, 374 |
| BstNI | CCWGG | 3 cut(s) | 32, 237, 575 |
| BstNSI | RCATGY | 1 cut(s) | 668 |
| BstSCI | CCNGG | 3 cut(s) | 30, 235, 573 |
| BstSFI | CTRYAG | 1 cut(s) | 444 |
| BstV1I | GCAGC | 2 cut(s) | 43, 401 |
| BstV2I | GAAGAC | 1 cut(s) | 813 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 824 |
| Bsu15I | ATCGAT | 1 cut(s) | 93 |
| BsuRI | GGCC | 2 cut(s) | 44, 288 |
| BsuTUI | ATCGAT | 1 cut(s) | 93 |
| BtsCI | GGATG | 4 cut(s) | 12, 248, 332, 439 |
| BtsIMutI | CAGTG | 2 cut(s) | 368, 781 |
| Cac8I | GCNNGC | 2 cut(s) | 312, 538 |
| CaiI | CAGNNNCTG | 1 cut(s) | 31 |
| CfoI | GCGC | 1 cut(s) | 30 |
| Cfr13I | GGNCC | 1 cut(s) | 239 |
| ClaI | ATCGAT | 1 cut(s) | 93 |
| Csp6I | GTAC | 2 cut(s) | 630, 767 |
| CviAII | CATG | 2 cut(s) | 665, 754 |
| CviQI | GTAC | 2 cut(s) | 630, 767 |
| DdeI | CTNAG | 3 cut(s) | 120, 348, 371 |
| DpnI | GATC | 4 cut(s) | 81, 92, 96, 435 |
| DpnII | GATC | 4 cut(s) | 79, 90, 94, 433 |
| EaeI | YGGCCR | 1 cut(s) | 286 |
| Eam1104I | CTCTTC | 2 cut(s) | 414, 793 |
| EarI | CTCTTC | 2 cut(s) | 414, 793 |
| EciI | GGCGGA | 1 cut(s) | 657 |
| Eco130I | CCWWGG | 1 cut(s) | 721 |
| Eco47I | GGWCC | 1 cut(s) | 239 |
| Eco72I | CACGTG | 1 cut(s) | 497 |
| EcoRI | GAATTC | 2 cut(s) | 463, 601 |
| EcoRII | CCWGG | 3 cut(s) | 30, 235, 573 |
| EcoT14I | CCWWGG | 1 cut(s) | 721 |
| ErhI | CCWWGG | 1 cut(s) | 721 |
| FaeI | CATG | 2 cut(s) | 668, 757 |
| FaiI | YATR | 7 cut(s) | 101, 174, 387, 521, 650, 666, 755 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 692, 724 |
| FatI | CATG | 2 cut(s) | 664, 753 |
| FbaI | TGATCA | 1 cut(s) | 433 |
| Fnu4HI | GCNGC | 2 cut(s) | 57, 390 |
| FokI | GGATG | 4 cut(s) | 19, 235, 319, 426 |
| Fsp4HI | GCNGC | 2 cut(s) | 57, 390 |
| FspBI | CTAG | 3 cut(s) | 510, 537, 609 |
| GlaI | GCGC | 1 cut(s) | 29 |
| GluI | GCNGC | 2 cut(s) | 57, 390 |
| HaeII | RGCGCY | 1 cut(s) | 31 |
| HaeIII | GGCC | 2 cut(s) | 44, 288 |
| HapII | CCGG | 1 cut(s) | 221 |
| HhaI | GCGC | 1 cut(s) | 30 |
| Hin1II | CATG | 2 cut(s) | 668, 757 |
| Hin6I | GCGC | 1 cut(s) | 28 |
| HinP1I | GCGC | 1 cut(s) | 28 |
| HincII | GTYRAC | 1 cut(s) | 69 |
| HindII | GTYRAC | 1 cut(s) | 69 |
| HinfI | GANTC | 2 cut(s) | 132, 164 |
| HpaI | GTTAAC | 1 cut(s) | 69 |
| HpaII | CCGG | 1 cut(s) | 221 |
| Hpy166II | GTNNAC | 1 cut(s) | 69 |
| Hpy188I | TCNGA | 1 cut(s) | 838 |
| Hpy188III | TCNNGA | 1 cut(s) | 709 |
| Hpy8I | GTNNAC | 1 cut(s) | 69 |
| HpyAV | CCTTC | 2 cut(s) | 184, 547 |
| HpyCH4III | ACNGT | 2 cut(s) | 776, 812 |
| HpyCH4IV | ACGT | 1 cut(s) | 496 |
| HpyCH4V | TGCA | 4 cut(s) | 176, 280, 320, 389 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 41, 374 |
| HpyF3I | CTNAG | 3 cut(s) | 120, 348, 371 |
| HpySE526I | ACGT | 1 cut(s) | 496 |
| Hsp92II | CATG | 2 cut(s) | 668, 757 |
| HspAI | GCGC | 1 cut(s) | 28 |
| Ksp22I | TGATCA | 1 cut(s) | 433 |
| KspAI | GTTAAC | 1 cut(s) | 69 |
| Kzo9I | GATC | 4 cut(s) | 79, 90, 94, 433 |
| LguI | GCTCTTC | 1 cut(s) | 414 |
| LmnI | GCTCC | 2 cut(s) | 577, 644 |
| Lsp1109I | GCAGC | 2 cut(s) | 43, 401 |
| LweI | GCATC | 2 cut(s) | 31, 643 |
| MaeI | CTAG | 3 cut(s) | 510, 537, 609 |
| MaeII | ACGT | 1 cut(s) | 496 |
| MalI | GATC | 4 cut(s) | 81, 92, 96, 435 |
| MboI | GATC | 4 cut(s) | 79, 90, 94, 433 |
| MboII | GAAGA | 9 cut(s) | 172, 198, 431, 610, 712, 791, 794, 810, 818 |
| MluCI | AATT | 9 cut(s) | 50, 84, 124, 214, 229, 463, 482, 601, 832 |
| MlyI | GAGTC | 1 cut(s) | 158 |
| MroXI | GAANNNNTTC | 1 cut(s) | 704 |
| MseI | TTAA | 1 cut(s) | 68 |
| MslI | CAYNNNNRTG | 1 cut(s) | 752 |
| MspI | CCGG | 1 cut(s) | 221 |
| MspR9I | CCNGG | 3 cut(s) | 32, 237, 575 |
| MvaI | CCWGG | 3 cut(s) | 32, 237, 575 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 41, 374 |
| NdeII | GATC | 4 cut(s) | 79, 90, 94, 433 |
| NheI | GCTAGC | 1 cut(s) | 536 |
| NlaIII | CATG | 2 cut(s) | 668, 757 |
| NmeAIII | GCCGAG | 1 cut(s) | 314 |
| NspI | RCATGY | 1 cut(s) | 668 |
| PciSI | GCTCTTC | 1 cut(s) | 414 |
| PdmI | GAANNNNTTC | 1 cut(s) | 704 |
| PfeI | GAWTC | 1 cut(s) | 132 |
| PflFI | GACNNNGTC | 1 cut(s) | 812 |
| PfoI | TCCNGGA | 1 cut(s) | 235 |
| PkrI | GCNGC | 2 cut(s) | 58, 391 |
| PleI | GAGTC | 1 cut(s) | 158 |
| PmaCI | CACGTG | 1 cut(s) | 497 |
| PmlI | CACGTG | 1 cut(s) | 497 |
| PpsI | GAGTC | 1 cut(s) | 158 |
| Ppu21I | YACGTR | 1 cut(s) | 497 |
| Psp6I | CCWGG | 3 cut(s) | 30, 235, 573 |
| PspCI | CACGTG | 1 cut(s) | 497 |
| PspGI | CCWGG | 3 cut(s) | 30, 235, 573 |
| PspPI | GGNCC | 1 cut(s) | 239 |
| PstNI | CAGNNNCTG | 1 cut(s) | 31 |
| PsyI | GACNNNGTC | 1 cut(s) | 812 |
| RsaI | GTAC | 2 cut(s) | 631, 768 |
| RsaNI | GTAC | 2 cut(s) | 630, 767 |
| RseI | CAYNNNNRTG | 1 cut(s) | 752 |
| SapI | GCTCTTC | 1 cut(s) | 414 |
| SaqAI | TTAA | 1 cut(s) | 68 |
| SatI | GCNGC | 2 cut(s) | 57, 390 |
| Sau3AI | GATC | 4 cut(s) | 79, 90, 94, 433 |
| Sau96I | GGNCC | 1 cut(s) | 239 |
| SchI | GAGTC | 1 cut(s) | 158 |
| ScrFI | CCNGG | 3 cut(s) | 32, 237, 575 |
| SfaNI | GCATC | 2 cut(s) | 31, 643 |
| SfcI | CTRYAG | 1 cut(s) | 444 |
| SinI | GGWCC | 1 cut(s) | 239 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 752 |
| Sse9I | AATT | 9 cut(s) | 50, 84, 124, 214, 229, 463, 482, 601, 832 |
| SsiI | CCGC | 1 cut(s) | 642 |
| SspI | AATATT | 1 cut(s) | 567 |
| SspMI | CTAG | 3 cut(s) | 510, 537, 609 |
| StyD4I | CCNGG | 3 cut(s) | 30, 235, 573 |
| StyI | CCWWGG | 1 cut(s) | 721 |
| TaaI | ACNGT | 2 cut(s) | 776, 812 |
| TaiI | ACGT | 1 cut(s) | 499 |
| TaqI | TCGA | 3 cut(s) | 82, 93, 162 |
| TasI | AATT | 9 cut(s) | 50, 84, 124, 214, 229, 463, 482, 601, 832 |
| TfiI | GAWTC | 1 cut(s) | 132 |
| Tru1I | TTAA | 1 cut(s) | 68 |
| Tru9I | TTAA | 1 cut(s) | 68 |
| TscAI | CASTG | 2 cut(s) | 375, 781 |
| TseI | GCWGC | 2 cut(s) | 56, 389 |
| TspDTI | ATGAA | 7 cut(s) | 134, 172, 198, 646, 728, 770, 819 |
| TspRI | CASTG | 2 cut(s) | 375, 781 |
| Tth111I | GACNNNGTC | 1 cut(s) | 812 |
| VpaK11BI | GGWCC | 1 cut(s) | 239 |
| XapI | RAATTY | 3 cut(s) | 84, 463, 601 |
| XceI | RCATGY | 1 cut(s) | 668 |
| XmnI | GAANNNNTTC | 1 cut(s) | 704 |
| XspI | CTAG | 3 cut(s) | 510, 537, 609 |