RchiOBHm_Chr7g0208561

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000090
Physical Location & Seq
Forward (+)
25975329 .. 25980786
5458 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18666

Sequence Viewer

Length: 615 bp
ATGATAAGGAAGCCTGCTAATGCAACAACAAGAGCATCCAAATCAGGTTCTCAGCTACCATCACAACCAGCACTGAGAGCAACTTCTTATGCAGCACCCACAACAACTGAACTGCCATTTGAAGAGCCACAAGCTGATCAACATCCTACAGCTCACAACTCAGAATTCCTCTACCCTGCTGAATTGAAAAAAACACGTGGCAAAACAACTGGGAAAGGTATGATTGAGATGATTGCTAGCAATGGCAACAAGAAGGTGGAGATAATATTTGACCAGGAGCATTGGGTCCCAAATACTGAGTATAGCAATAAGAAGTTCACTACCGCTATAGGGATTGAGGTTCGAAGGCGAGCTCCGGTATGTTACCGCGGATGGAATAAGATTTCAGGAGATATTAAGAGGACACTACGAGAGGGATTGATGGTACACTTTGACGTGGAAATAGAACATCCAAAAATTATCTATTTTGTGGATGATAAGATGCGCTCGGCGTATACTCAATTCAAGTGGAAATTGCACGATCACTACCAAAAATGTGGCACATCTATTCGGGGACGAGCCACACTTCCTCCACCTGATCTATGGGGTGAGAGATCGACAGAGGAGTGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

204

Amino Acids

23.4

Weight (kDa)

9.37

Isoelectric Point (pI)

55.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 494
AccII CGCG 1 cut(s) 369
AciI CCGC 3 cut(s) 324, 367, 369
AcsI RAATTY 1 cut(s) 164
AcvI CACGTG 1 cut(s) 197
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 1 cut(s) 330
AflIII ACRYGT 1 cut(s) 194
AgsI TTSAA 3 cut(s) 122, 187, 505
AjiI CACGTC 1 cut(s) 436
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 4 cut(s) 55, 134, 152, 353
AluI AGCT 4 cut(s) 55, 134, 152, 353
Alw21I GWGCWC 1 cut(s) 355
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 486
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 599
AsuII TTCGAA 1 cut(s) 343
AsuNHI GCTAGC 1 cut(s) 236
AvaII GGWCC 1 cut(s) 286
BanII GRGCYC 1 cut(s) 355
BbrPI CACGTG 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 1 cut(s) 104
BccI CCATC 3 cut(s) 67, 366, 415
BciT130I CCWGG 1 cut(s) 275
BclI TGATCA 1 cut(s) 136
BfaI CTAG 1 cut(s) 237
BfmI CTRYAG 2 cut(s) 147, 327
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 1 cut(s) 286
BmgBI CACGTC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 287, 288
BmrFI CCNGG 1 cut(s) 275
BmrI ACTGGG 1 cut(s) 219
BmsI GCATC 2 cut(s) 44, 471
BmtI GCTAGC 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 219
Bpu14I TTCGAA 1 cut(s) 343
BsaAI YACGTR 1 cut(s) 197
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 2 cut(s) 553, 583
Bsc4I CCNNNNNNNGG 1 cut(s) 330
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 247
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 5 cut(s) 35, 142, 377, 448, 478
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 4 cut(s) 65, 65, 174, 288
BseNI ACTGG 1 cut(s) 214
BseXI GCAGC 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 355
BsiSI CCGG 1 cut(s) 356
BslFI GGGAC 2 cut(s) 272, 567
BslI CCNNNNNNNGG 1 cut(s) 330
BsmFI GGGAC 2 cut(s) 272, 567
Bsp119I TTCGAA 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 4 cut(s) 136, 520, 577, 593
BspACI CCGC 3 cut(s) 324, 367, 369
BspCNI CTCAG 4 cut(s) 64, 66, 173, 289
BspFNI CGCG 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 287, 288
BspOI GCTAGC 1 cut(s) 240
BspQI GCTCTTC 1 cut(s) 117
BspT104I TTCGAA 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 247
BsrI ACTGG 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 367
BssMI GATC 4 cut(s) 136, 520, 577, 593
BssNAI GTATAC 1 cut(s) 495
Bst1107I GTATAC 1 cut(s) 495
Bst2UI CCWGG 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 117
BstBAI YACGTR 1 cut(s) 197
BstBI TTCGAA 1 cut(s) 343
BstC8I GCNNGC 3 cut(s) 15, 238, 351
BstDEI CTNAG 4 cut(s) 51, 74, 160, 297
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 5 cut(s) 35, 142, 377, 448, 478
BstFNI CGCG 1 cut(s) 369
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 4 cut(s) 139, 523, 580, 596
BstMBI GATC 4 cut(s) 136, 520, 577, 593
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 2 cut(s) 147, 327
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 536
BstZ17I GTATAC 1 cut(s) 495
BtgI CCRYGG 1 cut(s) 367
BtrI CACGTC 1 cut(s) 436
BtsCI GGATG 5 cut(s) 35, 142, 377, 448, 478
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 3 cut(s) 15, 238, 351
CfoI GCGC 1 cut(s) 486
Cfr13I GGNCC 1 cut(s) 286
Cfr42I CCGCGG 1 cut(s) 370
Csp6I GTAC 1 cut(s) 425
CspCI CAANNNNNGTGG 2 cut(s) 488, 523
CviJI RGCY 7 cut(s) 13, 55, 127, 134, 152, 353, 560
CviKI_1 RGCY 7 cut(s) 13, 55, 127, 134, 152, 353, 560
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 4 cut(s) 51, 74, 160, 297
DpnI GATC 4 cut(s) 138, 522, 579, 595
DpnII GATC 4 cut(s) 136, 520, 577, 593
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 353
Eco24I GRGCYC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 353
Eco72I CACGTG 1 cut(s) 197
EcoICRI GAGCTC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 286
EcoRI GAATTC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 355
FaiI YATR 7 cut(s) 90, 221, 303, 329, 361, 495, 583
FaqI GGGAC 2 cut(s) 272, 567
FbaI TGATCA 1 cut(s) 136
FblI GTMKAC 1 cut(s) 494
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 5 cut(s) 22, 129, 384, 435, 485
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 485
GluI GCNGC 1 cut(s) 93
HapII CCGG 1 cut(s) 356
HhaI GCGC 1 cut(s) 486
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HpaII CCGG 1 cut(s) 356
HphI GGTGA 1 cut(s) 599
Hpy166II GTNNAC 3 cut(s) 318, 427, 495
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 1 cut(s) 387
Hpy8I GTNNAC 3 cut(s) 318, 427, 495
HpyAV CCTTC 2 cut(s) 247, 339
HpyCH4IV ACGT 2 cut(s) 196, 435
HpyCH4V TGCA 3 cut(s) 23, 92, 517
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 4 cut(s) 51, 74, 160, 297
HpySE526I ACGT 2 cut(s) 196, 435
HspAI GCGC 1 cut(s) 484
KflI GGGWCCC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 136
KspI CCGCGG 1 cut(s) 370
Kzo9I GATC 4 cut(s) 136, 520, 577, 593
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 2 cut(s) 277, 358
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 2 cut(s) 44, 471
MaeI CTAG 1 cut(s) 237
MaeII ACGT 2 cut(s) 196, 435
MaeIII GTNAC 1 cut(s) 362
MalI GATC 4 cut(s) 138, 522, 579, 595
MboI GATC 4 cut(s) 136, 520, 577, 593
MboII GAAGA 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 5 cut(s) 164, 182, 456, 500, 512
MnlI CCTC 6 cut(s) 179, 331, 393, 406, 579, 595
MseI TTAA 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 369
MspI CCGG 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 1 cut(s) 77
NdeII GATC 4 cut(s) 136, 520, 577, 593
NheI GCTAGC 1 cut(s) 236
NlaIV GGNNCC 2 cut(s) 287, 288
NmeAIII GCCGAG 1 cut(s) 467
NspV TTCGAA 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 117
PkrI GCNGC 1 cut(s) 94
PmaCI CACGTG 1 cut(s) 197
PmlI CACGTG 1 cut(s) 197
Ppu21I YACGTR 1 cut(s) 197
PpuMI RGGWCCY 1 cut(s) 286
Psp124BI GAGCTC 1 cut(s) 355
Psp5II RGGWCCY 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 273
PspCI CACGTG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 287, 288
PspPI GGNCC 1 cut(s) 286
PspPPI RGGWCCY 1 cut(s) 286
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SacI GAGCTC 1 cut(s) 355
SacII CCGCGG 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 4 cut(s) 136, 520, 577, 593
Sau96I GGNCC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 1 cut(s) 355
SfaNI GCATC 2 cut(s) 44, 471
SfcI CTRYAG 2 cut(s) 147, 327
Sfr303I CCGCGG 1 cut(s) 370
SfuI TTCGAA 1 cut(s) 343
SgrBI CCGCGG 1 cut(s) 370
SinI GGWCC 1 cut(s) 286
Sse9I AATT 5 cut(s) 164, 182, 456, 500, 512
SsiI CCGC 3 cut(s) 324, 367, 369
SspI AATATT 1 cut(s) 267
SspMI CTAG 1 cut(s) 237
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 1 cut(s) 273
TaiI ACGT 2 cut(s) 199, 438
TaqI TCGA 2 cut(s) 343, 596
TasI AATT 5 cut(s) 164, 182, 456, 500, 512
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 78
TseI GCWGC 1 cut(s) 92
TspRI CASTG 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 286
XapI RAATTY 1 cut(s) 164
XcmI CCANNNNNNNNNTGG 1 cut(s) 579
XmiI GTMKAC 1 cut(s) 494
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.