RLG00000021737

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000090
Physical Location & Seq
Reverse (-)
77720598 .. 77723990
3393 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021737

Sequence Viewer

Length: 1536 bp
ATGTTTAAAGCAACTCTGAACAAGACCAAGGAAACCAATAAGCGTGCGTACCAGCTATCAACGCGTCCTCTATCATCCCCTCAACCTCAACCAACCATACAACAGTCATTGCTCACTCGAACTAGGGAGAACCGGTCTGCAGGTGAAGTTGGCCGTTCTGTGCCTGTTTCATCTCAAGGACATATGAAGAAAACTTATGGCAATATTTTACGGTTAGGAACTCATGCTGCAACCAATGCCACAAAGAAGAGAAATCAAATTCCAATGGATGATGAGCAATCCAATCTAAATGAGAACTGTCATGAACCTGTCAAGAAGGCGCGTGGCATTACAAAGAATAAGTTGGGAACTCCTGCTGTGATCAATCCAAAACTGAAGAGAGTTCAAATCCCAATGGACAATGAGGAGTGTATTCCAAATGAGAATTCTGACCCTCCTTTAGATCCAGAACCTGTAAAGAAGACCCGTGGCATTACAGTAGGGTTGAAAGCTCATGCTATTGTTAGTGCGACCAAAAAGAGAATTCCAATCAAGATGGACAAGGATCAAAAGCTCCCTGAGATCGTTCAAGCCAATGCTATGTTTGTTAACGAGATTGGGTCATTCACGCACAAATTAGCTCCACTCAAATTCAAATGGTGGAGAAAAGTACCTAAGGATGCCAAGAATGACATCAAAGAGGCTCTGACAACTAATTTTGAGTTTGATTGGACTGACCCGGAGCTGAGGATATTTGTGGAGAAGAAGATGGCCAAGGCATTTGGATCTTGGAGATCCAAGTTGCATGGACATTTTAAAAAGTATGCTCATGATTTAGAATATGCTCGAGCACACCCACCCGGAGAAAAGCTCTTTGGTGAAAGATCAATAGATGAATGGGAGTGGCTTTGTGACGAGCTGTTCATAGATGAAACCTATGTGAAACGAAGTCAAGTTAATGCTACAAATCGAAATCAGAAAGAGTATAATCATTGTGGAGGTTCACAGCCTTACCAAAAACATATGGAAGCTGCACTTAAGAAAGGTAAAAATGTGTCTTTTGTTGAGAATTGGAGCACTATGCATCAACATCGTGACGGTCAGTGGATCAACGAAGCAGCTGAACAAACTGGGAACAAAATGTTAGCAGAATTGAATCAGACAAAGGAGAAGTTAGCTGAAGTCCTTGGGGCTGCCTCACTTGATGAAATAGAAGTTCCCGTCTCTATGCAATTGGATATCTTGGCAAATGGTGTTGGGGTTGCAAAGGGTAGAGGCATTCGCGGTCTGGGCTATGGTCCACGGAAGGAACCCGTCCATTATTCTGAGAGTGATAAATCTGCAAATGCTTCCGTGACAGAACAAAAGGTGATTGAGCTGACAGCCATAGTGGAAAAGCTTTTGAGGCATATCAATTACATAGAAGAGCAATTTGCTACTGTTGAAGGGTATACTATTCATCATTCCAGTGATGATGATGATGATGATGATGATTATGATGATGGGGATGATGATGATGTGAATATCTATGGGGATGAAGATGAGGGTGCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

512

Amino Acids

57.82

Weight (kDa)

6.41

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 293 - 427 1.3e-10 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 1430
AccII CGCG 3 cut(s) 64, 322, 1263
AciI CCGC 1 cut(s) 1263
AclWI GGATC 5 cut(s) 437, 552, 768, 772, 1094
AcoI YGGCCR 2 cut(s) 151, 750
AcsI RAATTY 4 cut(s) 258, 424, 522, 629
AcuI CTGAAG 2 cut(s) 395, 1179
AfaI GTAC 2 cut(s) 50, 651
AflII CTTAAG 1 cut(s) 1016
AflIII ACRYGT 1 cut(s) 62
AgeI ACCGGT 1 cut(s) 132
AgsI TTSAA 6 cut(s) 386, 487, 569, 634, 1135, 1424
AjuI GAANNNNNNNTTGG 4 cut(s) 409, 441, 837, 869
Alw21I GWGCWC 2 cut(s) 832, 1058
Alw26I GTCTC 1 cut(s) 1207
AlwI GGATC 5 cut(s) 437, 552, 768, 772, 1094
AlwNI CAGNNNCTG 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 825
AoxI GGCC 2 cut(s) 151, 750
ApeKI GCWGC 4 cut(s) 227, 1010, 1097, 1172
ApoI RAATTY 4 cut(s) 258, 424, 522, 629
AsiGI ACCGGT 1 cut(s) 132
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 1277
AsuC2I CCSGG 2 cut(s) 719, 840
AsuHPI GGTGA 3 cut(s) 155, 869, 1360
AvaI CYCGRG 1 cut(s) 825
AvaII GGWCC 1 cut(s) 1277
AxyI CCTNAGG 1 cut(s) 654
BalI TGGCCA 1 cut(s) 752
BbsI GAAGAC 1 cut(s) 467
Bbv12I GWGCWC 2 cut(s) 832, 1058
BbvCI CCTCAGC 1 cut(s) 725
BbvI GCAGC 4 cut(s) 214, 997, 1109, 1159
BccI CCATC 3 cut(s) 529, 742, 1475
BceAI ACGGC 1 cut(s) 138
BcgI CGANNNNNNTGC 2 cut(s) 1052, 1086
BclI TGATCA 1 cut(s) 360
BcnI CCSGG 2 cut(s) 719, 840
BcoDI GTCTC 1 cut(s) 1207
BfaI CTAG 2 cut(s) 123, 1534
BfmI CTRYAG 1 cut(s) 138
BfrI CTTAAG 1 cut(s) 1016
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 4 cut(s) 228, 1011, 1098, 1173
BlsI GCNGC 4 cut(s) 229, 1012, 1099, 1174
Bme1390I CCNGG 2 cut(s) 719, 840
Bme18I GGWCC 1 cut(s) 1277
BmeT110I CYCGRG 1 cut(s) 825
BmgT120I GGNCC 1 cut(s) 1277
BmiI GGNNCC 1 cut(s) 1290
BmrFI CCNGG 2 cut(s) 719, 840
BmrI ACTGGG 1 cut(s) 1119
BmsI GCATC 2 cut(s) 649, 1072
BmuI ACTGGG 1 cut(s) 1119
BpiI GAAGAC 1 cut(s) 467
BplI GAGNNNNNCTC 2 cut(s) 834, 866
Bpu10I CCTNAGC 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 159
BpuMI CCSGG 2 cut(s) 719, 840
BsaJI CCNNGG 5 cut(s) 27, 466, 753, 1165, 1280
BsaWI WCCGGW 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 119, 149
Bse118I RCCGGY 1 cut(s) 132
Bse1I ACTGG 2 cut(s) 1114, 1446
Bse21I CCTNAGG 1 cut(s) 654
Bse3DI GCAATG 1 cut(s) 107
BseDI CCNNGG 5 cut(s) 27, 466, 753, 1165, 1280
BseGI GGATG 5 cut(s) 74, 274, 664, 1492, 1519
BseMI GCAATG 1 cut(s) 107
BseMII CTCAG 3 cut(s) 549, 716, 1296
BseNI ACTGG 2 cut(s) 1114, 1446
BseRI GAGGAG 1 cut(s) 419
BseXI GCAGC 4 cut(s) 214, 997, 1109, 1159
BsgI GTGCAG 1 cut(s) 996
Bsh1236I CGCG 3 cut(s) 64, 322, 1263
BshFI GGCC 2 cut(s) 153, 752
BshTI ACCGGT 1 cut(s) 132
BsiHKAI GWGCWC 2 cut(s) 832, 1058
BsiHKCI CYCGRG 1 cut(s) 825
BsiSI CCGG 3 cut(s) 133, 719, 840
BsmAI GTCTC 1 cut(s) 1207
BsmBI CGTCTC 1 cut(s) 1207
BsmI GAATGC 1 cut(s) 1257
BsnI GGCC 2 cut(s) 153, 752
BsoBI CYCGRG 1 cut(s) 825
Bsp1286I GDGCHC 2 cut(s) 832, 1058
Bsp143I GATC 8 cut(s) 360, 442, 544, 561, 764, 773, 863, 1086
BspACI CCGC 1 cut(s) 1263
BspANI GGCC 2 cut(s) 153, 752
BspCNI CTCAG 3 cut(s) 550, 717, 1297
BspFNI CGCG 3 cut(s) 64, 322, 1263
BspHI TCATGA 2 cut(s) 301, 808
BspLI GGNNCC 1 cut(s) 1290
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 5 cut(s) 437, 552, 768, 772, 1094
BspQI GCTCTTC 1 cut(s) 1398
BspTI CTTAAG 1 cut(s) 1016
BsrDI GCAATG 1 cut(s) 107
BsrFI RCCGGY 1 cut(s) 132
BsrI ACTGG 2 cut(s) 1114, 1446
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 5 cut(s) 27, 466, 753, 1165, 1280
BssMI GATC 8 cut(s) 360, 442, 544, 561, 764, 773, 863, 1086
BssNAI GTATAC 1 cut(s) 1431
BssT1I CCWWGG 3 cut(s) 27, 753, 1165
Bst1107I GTATAC 1 cut(s) 1431
Bst4CI ACNGT 6 cut(s) 105, 213, 299, 478, 1079, 1420
Bst6I CTCTTC 3 cut(s) 242, 371, 1398
BstAFI CTTAAG 1 cut(s) 1016
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 4 cut(s) 558, 654, 725, 1305
BstDSI CCRYGG 2 cut(s) 466, 1280
BstF5I GGATG 5 cut(s) 74, 274, 664, 1492, 1519
BstFNI CGCG 3 cut(s) 64, 322, 1263
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 8 cut(s) 363, 445, 547, 564, 767, 776, 866, 1089
BstMAI GTCTC 1 cut(s) 1207
BstMBI GATC 8 cut(s) 360, 442, 544, 561, 764, 773, 863, 1086
BstMWI GCNNNNNNNGC 4 cut(s) 61, 236, 1269, 1384
BstSCI CCNGG 2 cut(s) 717, 838
BstSFI CTRYAG 1 cut(s) 138
BstUI CGCG 3 cut(s) 64, 322, 1263
BstV1I GCAGC 4 cut(s) 214, 997, 1109, 1159
BstV2I GAAGAC 1 cut(s) 467
BstX2I RGATCY 3 cut(s) 442, 764, 773
BstYI RGATCY 3 cut(s) 442, 764, 773
BstZ17I GTATAC 1 cut(s) 1431
Bsu36I CCTNAGG 1 cut(s) 654
BsuRI GGCC 2 cut(s) 153, 752
BtgI CCRYGG 2 cut(s) 466, 1280
BtsCI GGATG 5 cut(s) 74, 274, 664, 1492, 1519
BtsIMutI CAGTG 2 cut(s) 1088, 1453
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 45
CaiI CAGNNNCTG 1 cut(s) 452
CciI TCATGA 2 cut(s) 301, 808
CfoI GCGC 1 cut(s) 322
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 1277
CseI GACGC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 49, 650
CspAI ACCGGT 1 cut(s) 132
CviAII CATG 5 cut(s) 224, 302, 494, 785, 809
CviQI GTAC 2 cut(s) 49, 650
DdeI CTNAG 4 cut(s) 558, 654, 725, 1305
DpnI GATC 8 cut(s) 362, 444, 546, 563, 766, 775, 865, 1088
DpnII GATC 8 cut(s) 360, 442, 544, 561, 764, 773, 863, 1086
DraI TTTAAA 2 cut(s) 7, 796
EaeI YGGCCR 2 cut(s) 151, 750
Eam1104I CTCTTC 3 cut(s) 242, 371, 1398
EarI CTCTTC 3 cut(s) 242, 371, 1398
Eco130I CCWWGG 3 cut(s) 27, 753, 1165
Eco32I GATATC 1 cut(s) 1219
Eco47I GGWCC 1 cut(s) 1277
Eco57I CTGAAG 2 cut(s) 395, 1179
Eco81I CCTNAGG 1 cut(s) 654
Eco88I CYCGRG 1 cut(s) 825
EcoRI GAATTC 2 cut(s) 424, 522
EcoRV GATATC 1 cut(s) 1219
EcoT14I CCWWGG 3 cut(s) 27, 753, 1165
EcoT22I ATGCAT 1 cut(s) 1065
ErhI CCWWGG 3 cut(s) 27, 753, 1165
Esp3I CGTCTC 1 cut(s) 1207
FaeI CATG 5 cut(s) 227, 305, 497, 788, 812
FalI AAGNNNNNCTT 2 cut(s) 999, 1031
FatI CATG 5 cut(s) 223, 301, 493, 784, 808
FauNDI CATATG 2 cut(s) 183, 1002
FbaI TGATCA 1 cut(s) 360
FblI GTMKAC 1 cut(s) 1430
Fnu4HI GCNGC 4 cut(s) 228, 1011, 1098, 1173
FokI GGATG 5 cut(s) 61, 281, 671, 1499, 1526
Fsp4HI GCNGC 4 cut(s) 228, 1011, 1098, 1173
FspBI CTAG 2 cut(s) 123, 1534
GlaI GCGC 1 cut(s) 321
GluI GCNGC 4 cut(s) 228, 1011, 1098, 1173
HaeIII GGCC 2 cut(s) 153, 752
HapII CCGG 3 cut(s) 133, 719, 840
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 322
Hin1II CATG 5 cut(s) 227, 305, 497, 788, 812
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 1376
HinfI GANTC 1 cut(s) 1135
HpaI GTTAAC 1 cut(s) 589
HpaII CCGG 3 cut(s) 133, 719, 840
HphI GGTGA 3 cut(s) 155, 869, 1360
Hpy166II GTNNAC 4 cut(s) 589, 983, 1280, 1431
Hpy188I TCNGA 6 cut(s) 18, 430, 687, 957, 1140, 1306
Hpy188III TCNNGA 6 cut(s) 302, 313, 446, 532, 809, 1073
Hpy8I GTNNAC 4 cut(s) 589, 983, 1280, 1431
HpyAV CCTTC 3 cut(s) 310, 1279, 1418
HpyCH4III ACNGT 6 cut(s) 105, 213, 299, 478, 1079, 1420
HpyCH4V TGCA 9 cut(s) 140, 230, 784, 1013, 1063, 1210, 1244, 1322, 1529
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 236, 1269, 1384
HpyF3I CTNAG 4 cut(s) 558, 654, 725, 1305
Hsp92II CATG 5 cut(s) 227, 305, 497, 788, 812
HspAI GCGC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 360
KspAI GTTAAC 1 cut(s) 589
Kzo9I GATC 8 cut(s) 360, 442, 544, 561, 764, 773, 863, 1086
LguI GCTCTTC 1 cut(s) 1398
LmnI GCTCC 4 cut(s) 558, 625, 721, 1053
Lsp1109I GCAGC 4 cut(s) 214, 997, 1109, 1159
LweI GCATC 2 cut(s) 649, 1072
MaeI CTAG 2 cut(s) 123, 1534
MaeIII GTNAC 3 cut(s) 890, 1073, 1333
MalI GATC 8 cut(s) 362, 444, 546, 563, 766, 775, 865, 1088
MboI GATC 8 cut(s) 360, 442, 544, 561, 764, 773, 863, 1086
MboII GAAGA 8 cut(s) 199, 259, 388, 472, 754, 757, 1415, 1529
MfeI CAATTG 1 cut(s) 1211
MflI RGATCY 3 cut(s) 442, 764, 773
MhlI GDGCHC 2 cut(s) 832, 1058
MlsI TGGCCA 1 cut(s) 752
MluI ACGCGT 1 cut(s) 62
MluNI TGGCCA 1 cut(s) 752
Mox20I TGGCCA 1 cut(s) 752
Mph1103I ATGCAT 1 cut(s) 1065
MscI TGGCCA 1 cut(s) 752
MseI TTAA 5 cut(s) 6, 588, 795, 936, 1017
MslI CAYNNNNRTG 1 cut(s) 1446
Msp20I TGGCCA 1 cut(s) 752
MspA1I CMGCKG 1 cut(s) 1100
MspCI CTTAAG 1 cut(s) 1016
MspI CCGG 3 cut(s) 133, 719, 840
MspR9I CCNGG 2 cut(s) 719, 840
MunI CAATTG 1 cut(s) 1211
Mva1269I GAATGC 1 cut(s) 1257
MvnI CGCG 3 cut(s) 64, 322, 1263
MwoI GCNNNNNNNGC 4 cut(s) 61, 236, 1269, 1384
NciI CCSGG 2 cut(s) 719, 840
NdeI CATATG 2 cut(s) 183, 1002
NdeII GATC 8 cut(s) 360, 442, 544, 561, 764, 773, 863, 1086
NlaIII CATG 5 cut(s) 227, 305, 497, 788, 812
NlaIV GGNNCC 1 cut(s) 1290
NmuCI GTSAC 3 cut(s) 890, 1073, 1333
NsiI ATGCAT 1 cut(s) 1065
PaeR7I CTCGAG 1 cut(s) 825
PagI TCATGA 2 cut(s) 301, 808
PaqCI CACCTGC 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 1398
PctI GAATGC 1 cut(s) 1257
PfeI GAWTC 1 cut(s) 1135
PinAI ACCGGT 1 cut(s) 132
PkrI GCNGC 4 cut(s) 229, 1012, 1099, 1174
PspN4I GGNNCC 1 cut(s) 1290
PspPI GGNCC 1 cut(s) 1277
PspXI VCTCGAGB 1 cut(s) 825
PstI CTGCAG 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 452
PsuI RGATCY 3 cut(s) 442, 764, 773
PvuII CAGCTG 1 cut(s) 1100
RsaI GTAC 2 cut(s) 50, 651
RsaNI GTAC 2 cut(s) 49, 650
RseI CAYNNNNRTG 1 cut(s) 1446
SapI GCTCTTC 1 cut(s) 1398
SaqAI TTAA 5 cut(s) 6, 588, 795, 936, 1017
SatI GCNGC 4 cut(s) 228, 1011, 1098, 1173
Sau3AI GATC 8 cut(s) 360, 442, 544, 561, 764, 773, 863, 1086
Sau96I GGNCC 1 cut(s) 1277
ScrFI CCNGG 2 cut(s) 719, 840
SduI GDGCHC 2 cut(s) 832, 1058
SfaNI GCATC 2 cut(s) 649, 1072
SfcI CTRYAG 1 cut(s) 138
Sfr274I CTCGAG 1 cut(s) 825
SinI GGWCC 1 cut(s) 1277
SlaI CTCGAG 1 cut(s) 825
SmiMI CAYNNNNRTG 1 cut(s) 1446
SmlI CTYRAG 3 cut(s) 174, 825, 1016
SmoI CTYRAG 3 cut(s) 174, 825, 1016
SsiI CCGC 1 cut(s) 1263
SspI AATATT 1 cut(s) 205
SspMI CTAG 2 cut(s) 123, 1534
StyD4I CCNGG 2 cut(s) 717, 838
StyI CCWWGG 3 cut(s) 27, 753, 1165
TaaI ACNGT 6 cut(s) 105, 213, 299, 478, 1079, 1420
TaqI TCGA 3 cut(s) 118, 826, 949
TfiI GAWTC 1 cut(s) 1135
Tru1I TTAA 5 cut(s) 6, 588, 795, 936, 1017
Tru9I TTAA 5 cut(s) 6, 588, 795, 936, 1017
TscAI CASTG 2 cut(s) 1088, 1453
TseFI GTSAC 3 cut(s) 890, 1073, 1333
TseI GCWGC 4 cut(s) 227, 1010, 1097, 1172
Tsp45I GTSAC 3 cut(s) 890, 1073, 1333
TspDTI ATGAA 9 cut(s) 159, 200, 318, 888, 892, 924, 1200, 1427, 1530
TspGWI ACGGA 2 cut(s) 1297, 1321
TspRI CASTG 2 cut(s) 1088, 1453
Vha464I CTTAAG 1 cut(s) 1016
VpaK11BI GGWCC 1 cut(s) 1277
XapI RAATTY 4 cut(s) 258, 424, 522, 629
XhoI CTCGAG 1 cut(s) 825
XmiI GTMKAC 1 cut(s) 1430
XspI CTAG 2 cut(s) 123, 1534
Zsp2I ATGCAT 1 cut(s) 1065
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.