Rh1DG366700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000090
Physical Location & Seq
Forward (+)
59243148 .. 59247316
4169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG366700.1

Sequence Viewer

Length: 1407 bp
ATGGCTCAAGGGAGAGGGAAGCGGATAAGGAAGGTTAAGAAGGTTCCTCCACCTCAACATCCAGCTACAACAACTGTGACAGATAATATGTTAGCTACATCTACTGTGAGTGAGAATGTGCCAGCAACAACTATTGTGCATGCTTATGTGCGAGCAAGAGCTAACATGCCACCAAGAGCTGATGTGCCACTGCAAGCTAACGTGCCACCACCAGCTAATATGGCCCCAACAATGCATCAACCGCCTACCCAACATGGGATGCCTTTTATGGGCATTGGTATGAAAAGAAAGCGTGGTAAATCAGGTGGTAAAGCTCTTCAGGACCTTATAAAGGCTAATGGTGGACCTCTGCGTGTTGACTTTCATCCGACCATCCATGTCCCGTCTGATGACATAATTTCTAAAATGTTTACTTCAGAGATAGGAATTACTGTCAGAGGTGGGGCACCAGTATGTCACTATGGTTGGTCTGATGTTGATGAAGATGATAAGAGGGACCTAAGAGAGGATTTGCGGGTGTTCTTTGTGGTGGATCTAAGCGATCCAGTTGTTGTTGCTTATGTCGATTCTAAAATGTCCACTGCTTACTCCCAATTCAAGTCTCGACTGAAGAAGGAGTGGCAAGGATTTGGCTCACCTGAGCTGGGACGAGCAAATCTACCTAATGCAGATCTATGGAATGAGAGGCCTGTCTCGCATTGGCACTGGCTTTGTGACAACATATACACCAACCAGTCTTGCATAGTATGCTTACATTATTTTCTTTGGTTTTATTATTCAATTATTCTAACTGAAACTTTTACATTGAATGATAATCGATTTTATATAATTAAGGAAATTGCGGAAAAGAATTCTGCTAATCGTTATATGCAGCAACATACCCACAGGGCCGGTGCACGACCATACGTGCAACATGCTTTGGCAGCCTCTAAGGAAGGGAAGGAGTTGTCGCTCATAAATAACTGGGGAGAGAAACACAAGGATGATAATCATGAATGGATTAATGAGGTTGCCAAGAAAAAATATGAGAAGATGGAGGCTGAGAGGATTGCTCTTATAGAGAAGTTGTACCGAGAGGCTCCCGAGGGTACTCCACATGATTCTATCAAACTGACTTTGGAAGCAGAGTTTCCAATAATGGCTAAGGAGCTTGGGAGGAAGGGTAGGATGATCCATGGCATTGGTAACGTCCCTCATATACATTCTAACATACACAGAGTATCTGCATGTGCTGGCACTAATTCTGAGGTACCTGAATTACGTGCTCTTATCAACCAACTTACCATCAACATGCTCAGTATGAAGGAACAAAATGGACACTTGAAGGCTCAAGTAGAAAGCTTATTAAGGCAATCTCCCGGACAGATGAGTGAGGATGACTTCCCCCACCCCAGCACCAACTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

468

Amino Acids

52.9

Weight (kDa)

8.85

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 278 - 348 3.9e-06 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000090)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18340 FvH4_2g08421 FvH4_3g05430 FvH4_3g26318 FvH4_3g43970 FvH4_5g24831 FvH4_6g20331 FvH4_6g23072 FvH4_7g02471 FvH4_7g02601 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790 FvH4_7g09790
malus_domestica MD09G1277700.v1.1
pyrus_communis pycom14g05970 pycom395g00100
rosa_chinensis RchiOBHm_Chr1g0329081 RchiOBHm_Chr1g0332631 RchiOBHm_Chr1g0341051 RchiOBHm_Chr1g0346821 RchiOBHm_Chr1g0346841 RchiOBHm_Chr1g0377301 RchiOBHm_Chr1g0378881 RchiOBHm_Chr1g0381361 RchiOBHm_Chr2g0094421 RchiOBHm_Chr2g0115791 RchiOBHm_Chr2g0131391 RchiOBHm_Chr3g0469161 RchiOBHm_Chr3g0477491 RchiOBHm_Chr4g0397121 RchiOBHm_Chr4g0403221 RchiOBHm_Chr4g0403811 RchiOBHm_Chr4g0418081 RchiOBHm_Chr4g0434301 RchiOBHm_Chr5g0004171 RchiOBHm_Chr5g0007651 RchiOBHm_Chr5g0025151 RchiOBHm_Chr5g0029021 RchiOBHm_Chr5g0036581 RchiOBHm_Chr5g0040531 RchiOBHm_Chr5g0041581 RchiOBHm_Chr5g0041591 RchiOBHm_Chr5g0055171 RchiOBHm_Chr5g0059931 RchiOBHm_Chr5g0070861 RchiOBHm_Chr5g0072491 RchiOBHm_Chr5g0073831 RchiOBHm_Chr5g0076701 RchiOBHm_Chr6g0264941 RchiOBHm_Chr6g0268711 RchiOBHm_Chr6g0272081 RchiOBHm_Chr7g0180801 RchiOBHm_Chr7g0206041 RchiOBHm_Chr7g0206051 RchiOBHm_Chr7g0206191 RchiOBHm_Chr7g0207401 RchiOBHm_Chr7g0208561 RchiOBHm_Chr7g0208571 RchiOBHm_Chr7g0232661 RchiOBHm_Chr7g0238901
rosa_laevigata RLG00000003152 RLG00000007513 RLG00000010392 RLG00000011803 RLG00000012560 RLG00000014764 RLG00000017712 RLG00000017809 RLG00000017860 RLG00000018875 RLG00000020741 RLG00000021294 RLG00000021737 RLG00000023224 RLG00000023340 RLG00000025142 RLG00000027945 RLG00000028772 RLG00000028775 RLG00000028776 RLG00000029536 RLG00000029993 RLG00000030256 RLG00000030594 RLG00000030697 RLG00000032707 RLG00000035344 RLG00000035458 RLG00000036306 RLG00000036953
rosa_multiflora Rmu_co8065394.1_g000001 Rmu_co8424083.1_g000001 Rmu_sc0000012.1_g000007 Rmu_sc0000073.1_g000003 Rmu_sc0000177.1_g000022 Rmu_sc0000356.1_g000009 Rmu_sc0000433.1_g000025 Rmu_sc0001229.1_g000008 Rmu_sc0001478.1_g000007 Rmu_sc0001552.1_g000046 Rmu_sc0001731.1_g000001 Rmu_sc0001731.1_g000004 Rmu_sc0001942.1_g000088 Rmu_sc0002530.1_g000034 Rmu_sc0002758.1_g000006 Rmu_sc0003033.1_g000034 Rmu_sc0003158.1_g000009 Rmu_sc0003193.1_g000001 Rmu_sc0003314.1_g000041 Rmu_sc0003756.1_g000007 Rmu_sc0003895.1_g000016 Rmu_sc0004149.1_g000005 Rmu_sc0004413.1_g000038 Rmu_sc0004509.1_g000025 Rmu_sc0005142.1_g000008 Rmu_sc0005291.1_g000005 Rmu_sc0005772.1_g000001 Rmu_sc0005962.1_g000002 Rmu_sc0006223.1_g000037 Rmu_sc0006898.1_g000018 Rmu_sc0007822.1_g000006 Rmu_sc0007822.1_g000007 Rmu_sc0015982.1_g000001 Rmu_sc0023577.1_g000001 Rmu_sc0026009.1_g000013 Rmu_ssc0000264.1_g000011 Rmu_ssc0000264.1_g000014 Rmu_ssc0000467.1_g000035
rosa_roxburghii Rroxscaffold_1G00003310 Rroxscaffold_1G00003440 Rroxscaffold_1G00025390 Rroxscaffold_1G00027650 Rroxscaffold_1G00035520 Rroxscaffold_1G00039720 Rroxscaffold_2G00096880 Rroxscaffold_2G00138110 Rroxscaffold_3G00223540 Rroxscaffold_3G00226400 Rroxscaffold_3G00249970 Rroxscaffold_3G00251230 Rroxscaffold_4G00308110 Rroxscaffold_4G00308440 Rroxscaffold_4G00308470 Rroxscaffold_4G00311680 Rroxscaffold_4G00311690 Rroxscaffold_4G00330900 Rroxscaffold_5G00342170 Rroxscaffold_5G00376290 Rroxscaffold_6G00392450 Rroxscaffold_6G00421400 Rroxscaffold_6G00430840 Rroxscaffold_7G00171590 Rroxscaffold_7G00178520 Rroxscaffold_7G00192720
rosa_rugosa Rorug01G0184200 Rorug02G0001800 Rorug02G0296300.1 Rorug02G0296400 Rorug02G0395800 Rorug03G0045600 Rorug03G0045700 Rorug03G0273100 Rorug04G0060900 Rorug04G0073900 Rorug04G0082100 Rorug04G0083700 Rorug04G0140600 Rorug04G0147600 Rorug04G0202000 Rorug04G0365300 Rorug05G0164600 Rorug05G0164700 Rorug05G0164800 Rorug05G0313400 Rorug05G0460400 Rorug05G0460500 Rorug06G0004700 Rorug06G0087800 Rorug07G0040400 Rorug07G0147000 Rorug07G0164100 Rorug07G0183900 Rorug07G0313600
rosa_samantha Rh1AG151200 Rh1AG190200 Rh1AG201300 Rh1AG409200 Rh1BG069600 Rh1BG167900 Rh1BG168100 Rh1BG221200 Rh1BG231700 Rh1BG279700 Rh1BG335200 Rh1CG100500 Rh1CG142400 Rh1CG175600 Rh1CG186200 Rh1CG348700 Rh1DG025200 Rh1DG040900 Rh1DG107900 Rh1DG108000 Rh1DG132100 Rh1DG198700 Rh1DG198900 Rh1DG248100 Rh1DG311000 Rh1DG366700 Rh2AG005300 Rh2AG262100 Rh2CG263100 Rh2CG313000 Rh2CG313100 Rh2CG335400 Rh2CG392500 Rh2CG576000 Rh2DG091000 Rh3AG032000 Rh3BG032400 Rh3CG031100 Rh3CG163600 Rh3CG311100 Rh3DG032000 Rh4AG091500 Rh4BG086500 Rh4BG111300 Rh4BG139900 Rh4CG015000 Rh4CG099800 Rh4DG210900 Rh4DG234600 Rh4DG282500 Rh5AG075100 Rh5AG228600 Rh5AG326300 Rh5AG464100 Rh5BG265900 Rh5BG284000 Rh5BG284900 Rh5CG337600 Rh5CG394700 Rh5DG206500 Rh5DG285000 Rh5DG293700 Rh5DG403900 Rh5DG469800 Rh6AG045500 Rh6AG242800 Rh6BG073100 Rh6BG202400 Rh6CG179100 Rh6CG202800 Rh6DG170800 Rh6DG194300 Rh6DG440100 Rh6DG445600 Rh6DG470700 Rh7BG262200 Rh7BG295500 Rh7BG295800 Rh7CG210600 Rh7CG421500 Rh7DG233400 Rh7DG233500 Rh7DG238100 Rh7DG238200 Rh7DG245500
rosa_wichuraiana Rw1G016920 Rw1G022060 Rw1G028030 Rw2G007760 Rw3G016140 Rw3G020210 Rw4G012320 Rw4G026900 Rw4G034750 Rw5G028220 Rw6G003840 Rw6G004130 Rw7G032360 Rw7G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 329
Acc65I GGTACC 1 cut(s) 1249
AccB1I GGYRCC 2 cut(s) 445, 1249
AciI CCGC 4 cut(s) 22, 242, 514, 842
AclWI GGATC 3 cut(s) 536, 540, 1165
AcsI RAATTY 1 cut(s) 850
AcuI CTGAAG 3 cut(s) 302, 399, 629
AfaI GTAC 3 cut(s) 1070, 1090, 1251
AfiI CCNNNNNNNGG 5 cut(s) 255, 269, 331, 505, 644
AgsI TTSAA 4 cut(s) 598, 780, 808, 1324
Alw21I GWGCWC 2 cut(s) 898, 1267
Alw26I GTCTC 2 cut(s) 606, 697
Alw44I GTGCAC 1 cut(s) 894
AlwI GGATC 3 cut(s) 536, 540, 1165
Ama87I CYCGRG 1 cut(s) 1082
AoxI GGCC 3 cut(s) 222, 686, 888
ApaLI GTGCAC 1 cut(s) 894
ApeKI GCWGC 2 cut(s) 871, 923
ApoI RAATTY 1 cut(s) 850
AseI ATTAAT 1 cut(s) 1002
Asp718I GGTACC 1 cut(s) 1249
AspS9I GGNCC 5 cut(s) 223, 322, 344, 496, 888
AsuC2I CCSGG 1 cut(s) 1359
AsuHPI GGTGA 1 cut(s) 627
AvaI CYCGRG 1 cut(s) 1082
AvaII GGWCC 3 cut(s) 322, 344, 496
BaeGI GKGCMC 2 cut(s) 448, 898
BanI GGYRCC 2 cut(s) 445, 1249
Bbv12I GWGCWC 2 cut(s) 898, 1267
BbvI GCAGC 2 cut(s) 883, 935
BccI CCATC 3 cut(s) 380, 1027, 1292
BcnI CCSGG 1 cut(s) 1359
BcoDI GTCTC 2 cut(s) 606, 697
BglII AGATCT 1 cut(s) 670
BisI GCNGC 2 cut(s) 872, 924
BlsI GCNGC 2 cut(s) 873, 925
Bme1390I CCNGG 1 cut(s) 1359
Bme18I GGWCC 3 cut(s) 322, 344, 496
BmeT110I CYCGRG 1 cut(s) 1082
BmgT120I GGNCC 5 cut(s) 223, 322, 344, 496, 888
BmiI GGNNCC 6 cut(s) 45, 225, 447, 497, 1080, 1251
BmrFI CCNGG 1 cut(s) 1359
BmrI ACTGGG 1 cut(s) 973
BmsI GCATC 2 cut(s) 244, 249
BmuI ACTGGG 1 cut(s) 973
BplI GAGNNNNNCTC 2 cut(s) 1036, 1068
Bpu10I CCTNAGC 2 cut(s) 639, 1143
BpuEI CTTGAG 1 cut(s) 1314
BpuMI CCSGG 1 cut(s) 1359
Bsa29I ATCGAT 1 cut(s) 817
BsaAI YACGTR 2 cut(s) 907, 1262
BsaBI GATNNNNATC 1 cut(s) 987
BsaJI CCNNGG 2 cut(s) 1083, 1174
BsaXI ACNNNNNCTCC 2 cut(s) 1147, 1177
Bsc4I CCNNNNNNNGG 5 cut(s) 255, 269, 331, 505, 644
Bse118I RCCGGY 1 cut(s) 890
Bse1I ACTGG 5 cut(s) 449, 545, 710, 733, 968
Bse8I GATNNNNATC 1 cut(s) 987
BseCI ATCGAT 1 cut(s) 817
BseDI CCNNGG 2 cut(s) 1083, 1174
BseGI GGATG 7 cut(s) 58, 264, 364, 372, 988, 1173, 1381
BseJI GATNNNNATC 1 cut(s) 987
BseLI CCNNNNNNNGG 5 cut(s) 255, 269, 331, 505, 644
BseMII CTCAG 4 cut(s) 630, 1032, 1236, 1309
BseNI ACTGG 5 cut(s) 449, 545, 710, 733, 968
BseSI GKGCMC 2 cut(s) 448, 898
BseXI GCAGC 2 cut(s) 883, 935
BseYI CCCAGC 2 cut(s) 643, 1391
BshFI GGCC 3 cut(s) 224, 688, 890
BshNI GGYRCC 2 cut(s) 445, 1249
BshVI ATCGAT 1 cut(s) 817
BsiHKAI GWGCWC 2 cut(s) 898, 1267
BsiHKCI CYCGRG 1 cut(s) 1082
BsiSI CCGG 2 cut(s) 891, 1359
BslFI GGGAC 4 cut(s) 365, 509, 660, 1175
BslI CCNNNNNNNGG 5 cut(s) 255, 269, 331, 505, 644
BsmAI GTCTC 2 cut(s) 606, 697
BsmFI GGGAC 4 cut(s) 365, 509, 660, 1175
BsnI GGCC 3 cut(s) 224, 688, 890
BsoBI CYCGRG 1 cut(s) 1082
Bsp1286I GDGCHC 3 cut(s) 448, 898, 1267
Bsp143I GATC 4 cut(s) 532, 541, 670, 1170
Bsp19I CCATGG 1 cut(s) 1174
BspACI CCGC 4 cut(s) 22, 242, 514, 842
BspANI GGCC 3 cut(s) 224, 688, 890
BspCNI CTCAG 4 cut(s) 631, 1033, 1237, 1308
BspDI ATCGAT 1 cut(s) 817
BspHI TCATGA 1 cut(s) 991
BspLI GGNNCC 6 cut(s) 45, 225, 447, 497, 1080, 1251
BspPI GGATC 3 cut(s) 536, 540, 1165
BspQI GCTCTTC 1 cut(s) 321
BspT107I GGYRCC 2 cut(s) 445, 1249
BsrFI RCCGGY 1 cut(s) 890
BsrI ACTGG 5 cut(s) 449, 545, 710, 733, 968
BssAI RCCGGY 1 cut(s) 890
BssECI CCNNGG 2 cut(s) 1083, 1174
BssMI GATC 4 cut(s) 532, 541, 670, 1170
BssT1I CCWWGG 1 cut(s) 1174
Bst4CI ACNGT 3 cut(s) 76, 106, 433
Bst6I CTCTTC 1 cut(s) 321
BstAPI GCANNNNNTGC 1 cut(s) 747
BstBAI YACGTR 2 cut(s) 907, 1262
BstC8I GCNNGC 5 cut(s) 123, 141, 153, 195, 1234
BstDEI CTNAG 8 cut(s) 500, 536, 639, 930, 1041, 1143, 1245, 1295
BstDSI CCRYGG 1 cut(s) 1174
BstENI CCTNNNNNAGG 2 cut(s) 329, 503
BstF5I GGATG 7 cut(s) 58, 264, 364, 372, 988, 1173, 1381
BstKTI GATC 4 cut(s) 535, 544, 673, 1173
BstMAI GTCTC 2 cut(s) 606, 697
BstMBI GATC 4 cut(s) 532, 541, 670, 1170
BstMWI GCNNNNNNNGC 5 cut(s) 221, 241, 694, 747, 923
BstNSI RCATGY 5 cut(s) 143, 169, 917, 1230, 1294
BstSCI CCNGG 1 cut(s) 1357
BstSLI GKGCMC 2 cut(s) 448, 898
BstV1I GCAGC 2 cut(s) 883, 935
BstX2I RGATCY 2 cut(s) 532, 670
BstXI CCANNNNNNTGG 1 cut(s) 1181
BstYI RGATCY 2 cut(s) 532, 670
Bsu15I ATCGAT 1 cut(s) 817
BsuRI GGCC 3 cut(s) 224, 688, 890
BsuTUI ATCGAT 1 cut(s) 817
BtgI CCRYGG 1 cut(s) 1174
BtsCI GGATG 7 cut(s) 58, 264, 364, 372, 988, 1173, 1381
BtsI GCAGTG 2 cut(s) 188, 579
BtsIMutI CAGTG 3 cut(s) 188, 579, 703
Cac8I GCNNGC 5 cut(s) 123, 141, 153, 195, 1234
CciI TCATGA 1 cut(s) 991
Cfr10I RCCGGY 1 cut(s) 890
Cfr13I GGNCC 5 cut(s) 223, 322, 344, 496, 888
ClaI ATCGAT 1 cut(s) 817
Csp6I GTAC 3 cut(s) 1069, 1089, 1250
CviQI GTAC 3 cut(s) 1069, 1089, 1250
DdeI CTNAG 8 cut(s) 500, 536, 639, 930, 1041, 1143, 1245, 1295
DpnI GATC 4 cut(s) 534, 543, 672, 1172
DpnII GATC 4 cut(s) 532, 541, 670, 1170
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 1174
Eco147I AGGCCT 1 cut(s) 688
Eco47I GGWCC 3 cut(s) 322, 344, 496
Eco57I CTGAAG 3 cut(s) 302, 399, 629
Eco88I CYCGRG 1 cut(s) 1082
EcoNI CCTNNNNNAGG 2 cut(s) 329, 503
EcoO109I RGGNCCY 2 cut(s) 322, 496
EcoRI GAATTC 1 cut(s) 850
EcoT14I CCWWGG 1 cut(s) 1174
EcoT22I ATGCAT 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 1174
FaqI GGGAC 4 cut(s) 365, 509, 660, 1175
FauI CCCGC 1 cut(s) 507
Fnu4HI GCNGC 2 cut(s) 872, 924
FokI GGATG 7 cut(s) 45, 271, 351, 359, 995, 1180, 1388
Fsp4HI GCNGC 2 cut(s) 872, 924
GluI GCNGC 2 cut(s) 872, 924
GsaI CCCAGC 2 cut(s) 647, 1395
HaeIII GGCC 3 cut(s) 224, 688, 890
HapII CCGG 2 cut(s) 891, 1359
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 1339
HinfI GANTC 2 cut(s) 566, 1100
HpaII CCGG 2 cut(s) 891, 1359
HphI GGTGA 1 cut(s) 627
Hpy166II GTNNAC 5 cut(s) 344, 358, 411, 579, 896
Hpy188I TCNGA 6 cut(s) 369, 388, 418, 437, 472, 1246
Hpy188III TCNNGA 4 cut(s) 320, 603, 992, 1082
Hpy8I GTNNAC 5 cut(s) 344, 358, 411, 579, 896
HpyAV CCTTC 8 cut(s) 25, 34, 607, 929, 934, 1153, 1297, 1318
HpyCH4III ACNGT 3 cut(s) 76, 106, 433
HpyCH4IV ACGT 4 cut(s) 201, 906, 1188, 1261
HpyCH4V TGCA 9 cut(s) 139, 193, 235, 668, 741, 871, 896, 910, 1226
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 241, 694, 747, 923
HpyF3I CTNAG 8 cut(s) 500, 536, 639, 930, 1041, 1143, 1245, 1295
HpySE526I ACGT 4 cut(s) 201, 906, 1188, 1261
KpnI GGTACC 1 cut(s) 1253
Kzo9I GATC 4 cut(s) 532, 541, 670, 1170
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 2 cut(s) 1084, 1147
Lsp1109I GCAGC 2 cut(s) 883, 935
LweI GCATC 2 cut(s) 244, 249
MaeII ACGT 4 cut(s) 201, 906, 1188, 1261
MaeIII GTNAC 4 cut(s) 76, 455, 713, 1184
MalI GATC 4 cut(s) 534, 543, 672, 1172
MboI GATC 4 cut(s) 532, 541, 670, 1170
MboII GAAGA 4 cut(s) 308, 494, 622, 1042
MflI RGATCY 2 cut(s) 532, 670
MhlI GDGCHC 3 cut(s) 448, 898, 1267
MluCI AATT 9 cut(s) 396, 426, 593, 780, 828, 837, 850, 1240, 1256
MmeI TCCRAC 1 cut(s) 392
Mph1103I ATGCAT 1 cut(s) 237
MseI TTAA 4 cut(s) 36, 831, 1002, 1346
MslI CAYNNNNRTG 5 cut(s) 144, 278, 451, 981, 1289
MspI CCGG 2 cut(s) 891, 1359
MspR9I CCNGG 1 cut(s) 1359
MwoI GCNNNNNNNGC 5 cut(s) 221, 241, 694, 747, 923
NciI CCSGG 1 cut(s) 1359
NcoI CCATGG 1 cut(s) 1174
NdeII GATC 4 cut(s) 532, 541, 670, 1170
NlaIV GGNNCC 6 cut(s) 45, 225, 447, 497, 1080, 1251
NmuCI GTSAC 3 cut(s) 76, 455, 713
NsiI ATGCAT 1 cut(s) 237
NspI RCATGY 5 cut(s) 143, 169, 917, 1230, 1294
PaeI GCATGC 1 cut(s) 143
PagI TCATGA 1 cut(s) 991
PceI AGGCCT 1 cut(s) 688
PciSI GCTCTTC 1 cut(s) 321
PfeI GAWTC 2 cut(s) 566, 1100
PfoI TCCNGGA 1 cut(s) 1357
PkrI GCNGC 2 cut(s) 873, 925
Ppu21I YACGTR 2 cut(s) 907, 1262
PpuMI RGGWCCY 2 cut(s) 322, 496
PshBI ATTAAT 1 cut(s) 1002
PsiI TTATAA 1 cut(s) 329
Psp5II RGGWCCY 2 cut(s) 322, 496
PspFI CCCAGC 2 cut(s) 643, 1391
PspN4I GGNNCC 6 cut(s) 45, 225, 447, 497, 1080, 1251
PspPI GGNCC 5 cut(s) 223, 322, 344, 496, 888
PspPPI RGGWCCY 2 cut(s) 322, 496
PsuI RGATCY 2 cut(s) 532, 670
RsaI GTAC 3 cut(s) 1070, 1090, 1251
RsaNI GTAC 3 cut(s) 1069, 1089, 1250
RseI CAYNNNNRTG 5 cut(s) 144, 278, 451, 981, 1289
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 4 cut(s) 36, 831, 1002, 1346
SatI GCNGC 2 cut(s) 872, 924
Sau3AI GATC 4 cut(s) 532, 541, 670, 1170
Sau96I GGNCC 5 cut(s) 223, 322, 344, 496, 888
ScrFI CCNGG 1 cut(s) 1359
SduI GDGCHC 3 cut(s) 448, 898, 1267
SfaNI GCATC 2 cut(s) 244, 249
SinI GGWCC 3 cut(s) 322, 344, 496
SmiMI CAYNNNNRTG 5 cut(s) 144, 278, 451, 981, 1289
SmlI CTYRAG 2 cut(s) 6, 1329
SmoI CTYRAG 2 cut(s) 6, 1329
SphI GCATGC 1 cut(s) 143
Sse9I AATT 9 cut(s) 396, 426, 593, 780, 828, 837, 850, 1240, 1256
SseBI AGGCCT 1 cut(s) 688
SsiI CCGC 4 cut(s) 22, 242, 514, 842
StuI AGGCCT 1 cut(s) 688
StyD4I CCNGG 1 cut(s) 1357
StyI CCWWGG 1 cut(s) 1174
TaaI ACNGT 3 cut(s) 76, 106, 433
TaiI ACGT 4 cut(s) 204, 909, 1191, 1264
TaqI TCGA 3 cut(s) 564, 604, 817
TasI AATT 9 cut(s) 396, 426, 593, 780, 828, 837, 850, 1240, 1256
TfiI GAWTC 2 cut(s) 566, 1100
Tru1I TTAA 4 cut(s) 36, 831, 1002, 1346
Tru9I TTAA 4 cut(s) 36, 831, 1002, 1346
TscAI CASTG 3 cut(s) 195, 586, 710
TseFI GTSAC 3 cut(s) 76, 455, 713
TseI GCWGC 2 cut(s) 871, 923
Tsp45I GTSAC 3 cut(s) 76, 455, 713
TspDTI ATGAA 5 cut(s) 296, 353, 495, 1008, 1316
TspRI CASTG 3 cut(s) 195, 586, 710
VneI GTGCAC 1 cut(s) 894
VpaK11BI GGWCC 3 cut(s) 322, 344, 496
VspI ATTAAT 1 cut(s) 1002
XagI CCTNNNNNAGG 2 cut(s) 329, 503
XapI RAATTY 1 cut(s) 850
XceI RCATGY 5 cut(s) 143, 169, 917, 1230, 1294
Zsp2I ATGCAT 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.