No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g17900 FvH4_1g29340 |
| rosa_chinensis | RchiOBHm_Chr2g0108291 RchiOBHm_Chr5g0032181 RchiOBHm_Chr5g0032201 |
| rosa_laevigata | RLG00000017661 |
| rosa_multiflora | Rmu_co8366761.1_g000001 Rmu_sc0002372.1_g000012 Rmu_sc0005742.1_g000012 Rmu_sc0005742.1_g000013 |
| rosa_roxburghii | Rroxscaffold_2G00135310 Rroxscaffold_7G00208130 |
| rosa_rugosa | Rorug02G0001800 Rorug02G0150300 Rorug02G0455800 Rorug05G0129600 |
| rosa_samantha | Rh1CG182100 Rh2AG200700 Rh2BG213700 Rh2DG208200 Rh2DG208300 Rh3AG297500 Rh5BG473200 Rh5CG495800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 116, 164 |
| AfaI | GTAC | 1 cut(s) | 23 |
| AgsI | TTSAA | 2 cut(s) | 53, 209 |
| AleI | CACNNNNGTG | 1 cut(s) | 228 |
| AluBI | AGCT | 1 cut(s) | 79 |
| AluI | AGCT | 1 cut(s) | 79 |
| ApoI | RAATTY | 2 cut(s) | 116, 164 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 101, 133 |
| AspA2I | CCTAGG | 1 cut(s) | 239 |
| AvrII | CCTAGG | 1 cut(s) | 239 |
| BccI | CCATC | 1 cut(s) | 206 |
| BfaI | CTAG | 2 cut(s) | 219, 240 |
| BlnI | CCTAGG | 1 cut(s) | 239 |
| BpmI | CTGGAG | 1 cut(s) | 54 |
| BsaBI | GATNNNNATC | 1 cut(s) | 86 |
| BsaJI | CCNNGG | 1 cut(s) | 239 |
| Bse1I | ACTGG | 1 cut(s) | 226 |
| Bse8I | GATNNNNATC | 1 cut(s) | 86 |
| BseDI | CCNNGG | 1 cut(s) | 239 |
| BseJI | GATNNNNATC | 1 cut(s) | 86 |
| BseNI | ACTGG | 1 cut(s) | 226 |
| Bsp1407I | TGTACA | 1 cut(s) | 21 |
| Bsp143I | GATC | 1 cut(s) | 136 |
| BspHI | TCATGA | 1 cut(s) | 70 |
| BsrGI | TGTACA | 1 cut(s) | 21 |
| BsrI | ACTGG | 1 cut(s) | 226 |
| BssECI | CCNNGG | 1 cut(s) | 239 |
| BssMI | GATC | 1 cut(s) | 136 |
| BssT1I | CCWWGG | 1 cut(s) | 239 |
| Bst4CI | ACNGT | 1 cut(s) | 17 |
| BstAUI | TGTACA | 1 cut(s) | 21 |
| BstKTI | GATC | 1 cut(s) | 139 |
| BstMBI | GATC | 1 cut(s) | 136 |
| BtsIMutI | CAGTG | 1 cut(s) | 233 |
| CciI | TCATGA | 1 cut(s) | 70 |
| Csp6I | GTAC | 1 cut(s) | 22 |
| CviAII | CATG | 1 cut(s) | 71 |
| CviJI | RGCY | 3 cut(s) | 79, 149, 222 |
| CviKI_1 | RGCY | 3 cut(s) | 79, 149, 222 |
| CviQI | GTAC | 1 cut(s) | 22 |
| DpnI | GATC | 1 cut(s) | 138 |
| DpnII | GATC | 1 cut(s) | 136 |
| Eco130I | CCWWGG | 1 cut(s) | 239 |
| EcoT14I | CCWWGG | 1 cut(s) | 239 |
| ErhI | CCWWGG | 1 cut(s) | 239 |
| FaeI | CATG | 1 cut(s) | 74 |
| FaiI | YATR | 2 cut(s) | 63, 72 |
| FatI | CATG | 1 cut(s) | 70 |
| FspBI | CTAG | 2 cut(s) | 219, 240 |
| GsuI | CTGGAG | 1 cut(s) | 54 |
| Hin1II | CATG | 1 cut(s) | 74 |
| HinfI | GANTC | 2 cut(s) | 49, 110 |
| Hpy166II | GTNNAC | 1 cut(s) | 22 |
| Hpy188III | TCNNGA | 2 cut(s) | 33, 71 |
| Hpy8I | GTNNAC | 1 cut(s) | 22 |
| HpyCH4III | ACNGT | 1 cut(s) | 17 |
| HpyCH4V | TGCA | 3 cut(s) | 96, 122, 177 |
| Hsp92II | CATG | 1 cut(s) | 74 |
| Kzo9I | GATC | 1 cut(s) | 136 |
| LpnPI | CCDG | 2 cut(s) | 18, 239 |
| MaeI | CTAG | 2 cut(s) | 219, 240 |
| MalI | GATC | 1 cut(s) | 138 |
| MboI | GATC | 1 cut(s) | 136 |
| MboII | GAAGA | 1 cut(s) | 221 |
| MfeI | CAATTG | 1 cut(s) | 91 |
| MluCI | AATT | 5 cut(s) | 25, 91, 104, 116, 164 |
| MlyI | GAGTC | 1 cut(s) | 104 |
| MnlI | CCTC | 1 cut(s) | 203 |
| MseI | TTAA | 2 cut(s) | 234, 247 |
| MslI | CAYNNNNRTG | 1 cut(s) | 228 |
| MunI | CAATTG | 1 cut(s) | 91 |
| NdeII | GATC | 1 cut(s) | 136 |
| NlaIII | CATG | 1 cut(s) | 74 |
| OliI | CACNNNNGTG | 1 cut(s) | 228 |
| PagI | TCATGA | 1 cut(s) | 70 |
| PfeI | GAWTC | 1 cut(s) | 49 |
| PleI | GAGTC | 1 cut(s) | 104 |
| PpsI | GAGTC | 1 cut(s) | 104 |
| RsaI | GTAC | 1 cut(s) | 23 |
| RsaNI | GTAC | 1 cut(s) | 22 |
| RseI | CAYNNNNRTG | 1 cut(s) | 228 |
| SaqAI | TTAA | 2 cut(s) | 234, 247 |
| Sau3AI | GATC | 1 cut(s) | 136 |
| SchI | GAGTC | 1 cut(s) | 104 |
| SetI | ASST | 2 cut(s) | 81, 241 |
| SgeI | CNNG | 4 cut(s) | 45, 83, 231, 238 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 228 |
| Sse9I | AATT | 5 cut(s) | 25, 91, 104, 116, 164 |
| SspI | AATATT | 1 cut(s) | 204 |
| SspMI | CTAG | 2 cut(s) | 219, 240 |
| StyI | CCWWGG | 1 cut(s) | 239 |
| TaaI | ACNGT | 1 cut(s) | 17 |
| TasI | AATT | 5 cut(s) | 25, 91, 104, 116, 164 |
| TatI | WGTACW | 1 cut(s) | 21 |
| TfiI | GAWTC | 1 cut(s) | 49 |
| Tru1I | TTAA | 2 cut(s) | 234, 247 |
| Tru9I | TTAA | 2 cut(s) | 234, 247 |
| TscAI | CASTG | 1 cut(s) | 233 |
| TspDTI | ATGAA | 2 cut(s) | 59, 159 |
| TspRI | CASTG | 1 cut(s) | 233 |
| XapI | RAATTY | 2 cut(s) | 116, 164 |
| XmaJI | CCTAGG | 1 cut(s) | 239 |
| XspI | CTAG | 2 cut(s) | 219, 240 |