FvH4_1g21330

Protein DOWNSTREAM OF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016738
Physical Location & Seq
Reverse (-)
13298755 .. 13300100
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21330.t1

Sequence Viewer

Length: 492 bp
ATGGCAGTGTCTAGGGCAGTACTGGTGTTGCTTGCTCTCTGTGTGCTTCCGGCGCTTGTCAGTGCAAAAATCTTGGGCAAACCATTCCATGTCCAAGGTCGCGTCTACTGTGACACTTGCCGCTGCGGTTTCGAGACCTCCGCCACCATTTACATCGCCGGTGCAACGGTGGGAATCAAGTGCATGAACAGGAATAGCATGAGCCTTGCATACAGTGTAGAGGGCGTGACCGACGAAACTGGAACATACAACATTTTGGTCGAAGACGACCATGAGGACCAGATTTGCGAGTCGGTCCTCGTTAGCAGCCCGATCAGTGACTGTAAATCGGCTGATCCTGGACGTAGCCGTGCCAACGTGGTACTTACCCGCTTCAATGGCGTTGTTAAGACCAAGCGCTTTGCAAACAATATGGGGTTCTTCAAGGATCAGGCATTGCCTGAATGTACCGAACTGCTCAAGCAATACTTGAACTATGATCAGCCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

164

Amino Acids

17.84

Weight (kDa)

5.71

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 31 - 112 2.2e-16 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016738)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21330
malus_domestica MD15G1327700.v1.1 MD15G1327800.v1.1
prunus_persica Prupe.6G181300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0115161
rosa_laevigata RLG00000018163
rosa_multiflora Rmu_sc0002784.1_g000019
rosa_roxburghii Rroxscaffold_2G00130640
rosa_rugosa Rorug02G0194100
rosa_samantha Rh2AG252600 Rh2BG262200 Rh2CG257100 Rh2DG260800
rosa_wichuraiana Rw2G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 105
AccII CGCG 1 cut(s) 102
AciI CCGC 4 cut(s) 121, 126, 141, 370
AclWI GGATC 2 cut(s) 329, 435
AfaI GTAC 3 cut(s) 21, 363, 448
AfeI AGCGCT 1 cut(s) 398
AgsI TTSAA 3 cut(s) 376, 424, 472
AjnI CCWGG 1 cut(s) 337
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 2 cut(s) 329, 435
AlwNI CAGNNNCTG 1 cut(s) 321
Aor51HI AGCGCT 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 123, 306
AspLEI GCGC 2 cut(s) 55, 399
AspS9I GGNCC 2 cut(s) 277, 295
AvaII GGWCC 2 cut(s) 277, 295
BbsI GAAGAC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 110, 318
BceAI ACGGC 1 cut(s) 333
BciT130I CCWGG 1 cut(s) 339
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 12
BfoI RGCGCY 2 cut(s) 56, 400
BisI GCNGC 3 cut(s) 121, 124, 307
BlsI GCNGC 3 cut(s) 122, 125, 308
BmcAI AGTACT 1 cut(s) 21
Bme1390I CCNGG 1 cut(s) 339
Bme18I GGWCC 2 cut(s) 277, 295
BmgT120I GGNCC 2 cut(s) 277, 295
BmrFI CCNGG 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 443
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 94
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 27, 244
Bse3DI GCAATG 1 cut(s) 434
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 434
BseNI ACTGG 2 cut(s) 27, 244
BseXI GCAGC 2 cut(s) 110, 318
Bsh1236I CGCG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 50, 159
BsmAI GTCTC 1 cut(s) 128
Bso31I GGTCTC 1 cut(s) 128
Bsp143I GATC 4 cut(s) 312, 334, 427, 478
BspACI CCGC 4 cut(s) 121, 126, 141, 370
BspFNI CGCG 1 cut(s) 102
BspPI GGATC 2 cut(s) 329, 435
BspTNI GGTCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 434
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 2 cut(s) 27, 244
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 94
BssMI GATC 4 cut(s) 312, 334, 427, 478
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 4 cut(s) 110, 169, 215, 323
BstC8I GCNNGC 1 cut(s) 33
BstFNI CGCG 1 cut(s) 102
BstH2I RGCGCY 2 cut(s) 56, 400
BstHHI GCGC 2 cut(s) 55, 399
BstKTI GATC 4 cut(s) 315, 337, 430, 481
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 4 cut(s) 312, 334, 427, 478
BstMWI GCNNNNNNNGC 2 cut(s) 52, 378
BstNI CCWGG 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 337
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 110, 318
BstV2I GAAGAC 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 67, 220, 322
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 321
CfoI GCGC 2 cut(s) 55, 399
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 277, 295
CseI GACGC 1 cut(s) 91
Csp6I GTAC 3 cut(s) 20, 362, 447
CviAII CATG 4 cut(s) 89, 184, 199, 272
CviJI RGCY 5 cut(s) 204, 309, 332, 348, 484
CviKI_1 RGCY 5 cut(s) 204, 309, 332, 348, 484
CviQI GTAC 3 cut(s) 20, 362, 447
DpnI GATC 4 cut(s) 314, 336, 429, 480
DpnII GATC 4 cut(s) 312, 334, 427, 478
EciI GGCGGA 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 277, 295
Eco47III AGCGCT 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 94
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 4 cut(s) 92, 187, 202, 275
FaiI YATR 8 cut(s) 90, 185, 200, 211, 247, 273, 413, 477
FalI AAGNNNNNCTT 2 cut(s) 452, 484
FatI CATG 4 cut(s) 88, 183, 198, 271
FauI CCCGC 1 cut(s) 377
FbaI TGATCA 1 cut(s) 478
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 3 cut(s) 121, 124, 307
Fsp4HI GCNGC 3 cut(s) 121, 124, 307
FspBI CTAG 1 cut(s) 12
GlaI GCGC 2 cut(s) 54, 398
GluI GCNGC 3 cut(s) 121, 124, 307
HaeII RGCGCY 2 cut(s) 56, 400
HapII CCGG 2 cut(s) 50, 159
HgaI GACGC 1 cut(s) 91
HhaI GCGC 2 cut(s) 55, 399
Hin1II CATG 4 cut(s) 92, 187, 202, 275
Hin6I GCGC 2 cut(s) 53, 397
HinP1I GCGC 2 cut(s) 53, 397
HinfI GANTC 2 cut(s) 174, 290
HpaII CCGG 2 cut(s) 50, 159
Hpy166II GTNNAC 1 cut(s) 106
Hpy188III TCNNGA 1 cut(s) 133
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 236
HpyCH4III ACNGT 4 cut(s) 110, 169, 215, 323
HpyCH4IV ACGT 2 cut(s) 343, 357
HpyCH4V TGCA 5 cut(s) 65, 164, 183, 209, 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 378
HpySE526I ACGT 2 cut(s) 343, 357
Hsp92II CATG 4 cut(s) 92, 187, 202, 275
HspAI GCGC 2 cut(s) 53, 397
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 4 cut(s) 312, 334, 427, 478
Lsp1109I GCAGC 2 cut(s) 110, 318
MaeI CTAG 1 cut(s) 12
MaeII ACGT 2 cut(s) 343, 357
MaeIII GTNAC 3 cut(s) 110, 226, 317
MalI GATC 4 cut(s) 314, 336, 429, 480
MboI GATC 4 cut(s) 312, 334, 427, 478
MboII GAAGA 2 cut(s) 275, 412
MlyI GAGTC 1 cut(s) 299
MnlI CCTC 4 cut(s) 148, 214, 268, 308
MseI TTAA 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 123
MspI CCGG 2 cut(s) 50, 159
MspR9I CCNGG 1 cut(s) 339
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 52, 378
NdeII GATC 4 cut(s) 312, 334, 427, 478
NlaIII CATG 4 cut(s) 92, 187, 202, 275
NmuCI GTSAC 3 cut(s) 110, 226, 317
PfeI GAWTC 1 cut(s) 174
PfoI TCCNGGA 1 cut(s) 337
PkrI GCNGC 3 cut(s) 122, 125, 308
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspPI GGNCC 2 cut(s) 277, 295
PstNI CAGNNNCTG 1 cut(s) 321
RsaI GTAC 3 cut(s) 21, 363, 448
RsaNI GTAC 3 cut(s) 20, 362, 447
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 3 cut(s) 121, 124, 307
Sau3AI GATC 4 cut(s) 312, 334, 427, 478
Sau96I GGNCC 2 cut(s) 277, 295
ScaI AGTACT 1 cut(s) 21
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 339
SetI ASST 4 cut(s) 100, 140, 346, 360
SgrAI CRCCGGYG 1 cut(s) 158
SinI GGWCC 2 cut(s) 277, 295
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
SsiI CCGC 4 cut(s) 121, 126, 141, 370
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 337
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 4 cut(s) 110, 169, 215, 323
TaiI ACGT 2 cut(s) 346, 360
TaqI TCGA 2 cut(s) 132, 261
TaqII GACCGA 2 cut(s) 245, 283
TatI WGTACW 1 cut(s) 19
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 4 cut(s) 12, 67, 220, 322
TseFI GTSAC 3 cut(s) 110, 226, 317
TseI GCWGC 2 cut(s) 123, 306
Tsp45I GTSAC 3 cut(s) 110, 226, 317
TspDTI ATGAA 1 cut(s) 200
TspRI CASTG 4 cut(s) 12, 67, 220, 322
VpaK11BI GGWCC 2 cut(s) 277, 295
XmiI GTMKAC 1 cut(s) 105
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.