MD15G1327800.v1.1

Protein DOWNSTREAM OF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016738
Physical Location & Seq
Reverse (-)
35455776 .. 35456120
345 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1327800.v1.1.491

Sequence Viewer

Length: 345 bp
ATGTGCTTGTTAGGTGCAAGGGTGAGAATTGAGTGCAAAGACAGGAACACCTTGCAGCTTGCATACAGCGTCGAGGGAGAGACTGATTCGACTGGAACATACAACATTTTGGTTGAAGAGGACCATGAAGACCAAATTTGTGAGTCTGTCCTTGTTAGCAGTCCCATAAGTGACTGTAAATCGGCAGACCCCGGACGCAGCCGTGCGAACGTTGTAGTCACCCGTTACAACGGTGTGGTTAAGGACAAGCGTTATGCAAATAACATGGGCTTCTTCAAGAACGAGCCATTGGCTGGTTGTGAAAAAATCCTAGAGCAATACAAGAACTACGATCAGCAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

115

Amino Acids

12.87

Weight (kDa)

4.93

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 3 - 63 1.1e-10 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016738)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21330
malus_domestica MD15G1327700.v1.1 MD15G1327800.v1.1
prunus_persica Prupe.6G181300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0115161
rosa_laevigata RLG00000018163
rosa_multiflora Rmu_sc0002784.1_g000019
rosa_roxburghii Rroxscaffold_2G00130640
rosa_rugosa Rorug02G0194100
rosa_samantha Rh2AG252600 Rh2BG262200 Rh2CG257100 Rh2DG260800
rosa_wichuraiana Rw2G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 293
AclI AACGTT 1 cut(s) 210
AcsI RAATTY 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 2 cut(s) 116, 277
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw26I GTCTC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 55, 198
ApoI RAATTY 1 cut(s) 135
AspS9I GGNCC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 2 cut(s) 34, 211
AvaII GGWCC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 67, 210
BceAI ACGGC 1 cut(s) 186
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 1 cut(s) 311
BisI GCNGC 2 cut(s) 56, 199
BlsI GCNGC 2 cut(s) 57, 200
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmrFI CCNGG 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 97
BseXI GCAGC 2 cut(s) 67, 210
BsiSI CCGG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 331
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 190
BssMI GATC 1 cut(s) 331
Bst4CI ACNGT 2 cut(s) 176, 233
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 60
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 1 cut(s) 331
BstSCI CCNGG 1 cut(s) 190
BstV1I GCAGC 2 cut(s) 67, 210
BstV2I GAAGAC 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 121
CseI GACGC 2 cut(s) 58, 204
CviAII CATG 2 cut(s) 125, 265
CviJI RGCY 5 cut(s) 58, 201, 270, 286, 293
CviKI_1 RGCY 5 cut(s) 58, 201, 270, 286, 293
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 121
FaeI CATG 2 cut(s) 128, 268
FaiI YATR 6 cut(s) 64, 100, 126, 167, 255, 266
FaqI GGGAC 1 cut(s) 147
FatI CATG 2 cut(s) 124, 264
Fnu4HI GCNGC 2 cut(s) 56, 199
Fsp4HI GCNGC 2 cut(s) 56, 199
FspBI CTAG 1 cut(s) 311
GluI GCNGC 2 cut(s) 56, 199
HapII CCGG 1 cut(s) 192
HgaI GACGC 2 cut(s) 58, 204
Hin1II CATG 2 cut(s) 128, 268
HinfI GANTC 2 cut(s) 86, 143
HpaII CCGG 1 cut(s) 192
HphI GGTGA 2 cut(s) 34, 211
Hpy188III TCNNGA 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 74
HpyCH4III ACNGT 2 cut(s) 176, 233
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 5 cut(s) 17, 36, 55, 62, 257
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 2 cut(s) 128, 268
Kzo9I GATC 1 cut(s) 331
LpnPI CCDG 5 cut(s) 28, 78, 205, 279, 323
Lsp1109I GCAGC 2 cut(s) 67, 210
MaeI CTAG 1 cut(s) 311
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 3 cut(s) 170, 217, 224
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 3 cut(s) 128, 140, 265
MluCI AATT 2 cut(s) 27, 135
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 2 cut(s) 67, 112
MseI TTAA 1 cut(s) 240
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 192
NciI CCSGG 1 cut(s) 192
NdeII GATC 1 cut(s) 331
NlaIII CATG 2 cut(s) 128, 268
NmuCI GTSAC 2 cut(s) 170, 217
PfeI GAWTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 293
PkrI GCNGC 2 cut(s) 57, 200
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
Psp1406I AACGTT 1 cut(s) 210
PspPI GGNCC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 2 cut(s) 56, 199
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 192
SetI ASST 4 cut(s) 16, 53, 60, 213
SinI GGWCC 1 cut(s) 121
Sse9I AATT 2 cut(s) 27, 135
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 176, 233
TaiI ACGT 1 cut(s) 213
TaqI TCGA 2 cut(s) 72, 89
TasI AATT 2 cut(s) 27, 135
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseFI GTSAC 2 cut(s) 170, 217
TseI GCWGC 2 cut(s) 55, 198
Tsp45I GTSAC 2 cut(s) 170, 217
TspDTI ATGAA 1 cut(s) 141
Van91I CCANNNNNTGG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 121
XapI RAATTY 1 cut(s) 135
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.