RLG00000018163

Protein DOWNSTREAM OF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016738
Physical Location & Seq
Reverse (-)
26256401 .. 26257395
995 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018163

Sequence Viewer

Length: 489 bp
ATGGCAGTGTCTAGGGTGCTGGTGTTGCTTGCTCTCTGTGTGCTTCCGGCACTTGCCAGTGCAAAAACCGTGGGCAAACCCTTCCATGTCCAAGGTCGCGTCTACTGCGACACTTGCCGTTGTGGTTTCGAGACCTCTGCCACCACTTATATTGCCGGTGCAAGGGTGAGAATTGAGTGCAAATACAGGAAAAGCTTGAGCCTTGCATACAGTGTAGAGGGCGTTACCGACGCAACGGGAACATACCACATTTTGGTTGAAGACGACCACGAGGACCAGATTTGCGAAACGGTCCTCATTAGCAGCCCAATCAGTGACTGTAAATCAGCTGACCCCGGACGTAGCCGTTCCAACGTGGTACTTACCCGCTTCAACGGCGTTGTTAAGACCAAGCGCTTTGCAAACAACATGGGGTTCTTCAAGGATCAGGAATTGCCTGGTTGTTCCAAACTGCTCAAGCAATACTTGAACTACGATCAGCAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

163

Amino Acids

17.91

Weight (kDa)

8.41

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 30 - 111 5.2e-17 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016738)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21330
malus_domestica MD15G1327700.v1.1 MD15G1327800.v1.1
prunus_persica Prupe.6G181300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0115161
rosa_laevigata RLG00000018163
rosa_multiflora Rmu_sc0002784.1_g000019
rosa_roxburghii Rroxscaffold_2G00130640
rosa_rugosa Rorug02G0194100
rosa_samantha Rh2AG252600 Rh2BG262200 Rh2CG257100 Rh2DG260800
rosa_wichuraiana Rw2G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 253
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 367
AclWI GGATC 1 cut(s) 432
AfaI GTAC 1 cut(s) 360
AfeI AGCGCT 1 cut(s) 395
AfiI CCNNNNNNNGG 2 cut(s) 162, 253
AgsI TTSAA 4 cut(s) 260, 373, 421, 469
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 2 cut(s) 195, 329
AluI AGCT 2 cut(s) 195, 329
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 1 cut(s) 432
AlwNI CAGNNNCTG 1 cut(s) 318
Aor51HI AGCGCT 1 cut(s) 395
ApeKI GCWGC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 2 cut(s) 274, 292
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 178
AvaII GGWCC 2 cut(s) 274, 292
BauI CACGAG 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 315
BceAI ACGGC 3 cut(s) 102, 330, 391
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BciT130I CCWGG 1 cut(s) 438
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 397
BisI GCNGC 1 cut(s) 304
BlsI GCNGC 1 cut(s) 305
Bme1390I CCNGG 2 cut(s) 336, 438
Bme18I GGWCC 2 cut(s) 274, 292
BmgT120I GGNCC 2 cut(s) 274, 292
BmrFI CCNGG 2 cut(s) 336, 438
BpiI GAAGAC 1 cut(s) 267
BpuEI CTTGAG 2 cut(s) 217, 440
BpuMI CCSGG 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 3 cut(s) 69, 91, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 253
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 57
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 3 cut(s) 69, 91, 334
BseLI CCNNNNNNNGG 2 cut(s) 162, 253
BseNI ACTGG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 99
BsiSI CCGG 3 cut(s) 47, 156, 336
BslI CCNNNNNNNGG 2 cut(s) 162, 253
BsmAI GTCTC 1 cut(s) 125
Bso31I GGTCTC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 424, 475
BspACI CCGC 1 cut(s) 367
BspFNI CGCG 1 cut(s) 99
BspPI GGATC 1 cut(s) 432
BspTNI GGTCTC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 3 cut(s) 69, 91, 334
BssMI GATC 2 cut(s) 424, 475
BssSI CACGAG 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 91
Bst2BI CACGAG 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 4 cut(s) 70, 212, 292, 320
BstC8I GCNNGC 1 cut(s) 30
BstDSI CCRYGG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 2 cut(s) 427, 478
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 424, 475
BstMWI GCNNNNNNNGC 4 cut(s) 25, 105, 114, 375
BstNI CCWGG 1 cut(s) 438
BstSCI CCNGG 2 cut(s) 334, 436
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 69
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 64, 217, 319
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 318
CfoI GCGC 1 cut(s) 396
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 274, 292
CseI GACGC 2 cut(s) 88, 239
Csp6I GTAC 1 cut(s) 359
CspCI CAANNNNNGTGG 4 cut(s) 51, 86, 133, 168
CviAII CATG 2 cut(s) 86, 409
CviJI RGCY 5 cut(s) 195, 201, 306, 329, 345
CviKI_1 RGCY 5 cut(s) 195, 201, 306, 329, 345
CviQI GTAC 1 cut(s) 359
DpnI GATC 2 cut(s) 426, 477
DpnII GATC 2 cut(s) 424, 475
Eco130I CCWWGG 1 cut(s) 91
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 2 cut(s) 274, 292
Eco47III AGCGCT 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 2 cut(s) 89, 412
FaiI YATR 5 cut(s) 87, 150, 208, 244, 410
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FatI CATG 2 cut(s) 85, 408
FauI CCCGC 1 cut(s) 374
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 304
Fsp4HI GCNGC 1 cut(s) 304
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 395
GluI GCNGC 1 cut(s) 304
HaeII RGCGCY 1 cut(s) 397
HapII CCGG 3 cut(s) 47, 156, 336
HgaI GACGC 2 cut(s) 88, 239
HhaI GCGC 1 cut(s) 396
Hin1II CATG 2 cut(s) 89, 412
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 193
HpaII CCGG 3 cut(s) 47, 156, 336
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 130, 428
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 4 cut(s) 70, 212, 292, 320
HpyCH4IV ACGT 2 cut(s) 340, 354
HpyCH4V TGCA 5 cut(s) 62, 161, 180, 206, 401
HpyF10VI GCNNNNNNNGC 4 cut(s) 25, 105, 114, 375
HpySE526I ACGT 2 cut(s) 340, 354
Hsp92II CATG 2 cut(s) 89, 412
HspAI GCGC 1 cut(s) 394
Kzo9I GATC 2 cut(s) 424, 475
Lsp1109I GCAGC 1 cut(s) 315
MaeI CTAG 1 cut(s) 12
MaeII ACGT 2 cut(s) 340, 354
MaeIII GTNAC 2 cut(s) 223, 314
MalI GATC 2 cut(s) 426, 477
MboI GATC 2 cut(s) 424, 475
MboII GAAGA 2 cut(s) 272, 409
MluCI AATT 2 cut(s) 171, 431
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 4 cut(s) 145, 211, 265, 305
MseI TTAA 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 3 cut(s) 47, 156, 336
MspR9I CCNGG 2 cut(s) 336, 438
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 4 cut(s) 25, 105, 114, 375
NciI CCSGG 1 cut(s) 336
NdeII GATC 2 cut(s) 424, 475
NlaIII CATG 2 cut(s) 89, 412
NmuCI GTSAC 1 cut(s) 314
PflMI CCANNNNNTGG 1 cut(s) 253
PkrI GCNGC 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspPI GGNCC 2 cut(s) 274, 292
PstNI CAGNNNCTG 1 cut(s) 318
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 1 cut(s) 304
Sau3AI GATC 2 cut(s) 424, 475
Sau96I GGNCC 2 cut(s) 274, 292
ScrFI CCNGG 2 cut(s) 336, 438
SetI ASST 6 cut(s) 97, 137, 197, 331, 343, 357
SinI GGWCC 2 cut(s) 274, 292
SmlI CTYRAG 2 cut(s) 196, 455
SmoI CTYRAG 2 cut(s) 196, 455
Sse9I AATT 2 cut(s) 171, 431
SsiI CCGC 1 cut(s) 367
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 334, 436
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 4 cut(s) 70, 212, 292, 320
TaiI ACGT 2 cut(s) 343, 357
TaqI TCGA 1 cut(s) 129
TasI AATT 2 cut(s) 171, 431
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 4 cut(s) 12, 64, 217, 319
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 1 cut(s) 303
Tsp45I GTSAC 1 cut(s) 314
TspRI CASTG 4 cut(s) 12, 64, 217, 319
Van91I CCANNNNNTGG 1 cut(s) 253
VpaK11BI GGWCC 2 cut(s) 274, 292
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.