Prupe.6G181300_v2.0.a1

Protein DOWNSTREAM OF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016738
Physical Location & Seq
Forward (+)
18826748 .. 18827747
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G181300.1

Sequence Viewer

Length: 489 bp
ATGGCCATCTCTAGGGTTTTGTTGTTGTTTGCTCTCTGTGTGCTTCCGGGGCTTGTCAGCGCACGCACATTGGGCAACCCCTTCCACATCCAAGGCCGCGTCTACTGCGACACTTGCCGTTGTGGTTTTGAGACCACTGCCACCACTTACATTCCCGGTGCAACTGTGAGAATTGAGTGCAAATACAGGAACACCTTGCAGCTTGCTTACAGTGTTGAGGGAGAGACCGACGCAACTGGAACATACAACATTTTGGTTGAAGATGACCATGAGGACCAAATCTGTGAGTCTGTTCTTGTTAGCAGCCCAGTAAATGACTGTAAATCAGCAGACCCGGGACGTAAACGTGCGAACGTGGTGGTCACCCGTTACAACGGCGTCGTTAAGGACAAGCATTACGCAAATAACATGGGATTCTTCAAGGATCAGCCGTTGGCTGGGTGTGAAGAACTGCTAAAGCAATACTTGAACTATGATCAGCCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

163

Amino Acids

18.04

Weight (kDa)

5.39

Isoelectric Point (pI)

42.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016738)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21330
malus_domestica MD15G1327700.v1.1 MD15G1327800.v1.1
prunus_persica Prupe.6G181300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0115161
rosa_laevigata RLG00000018163
rosa_multiflora Rmu_sc0002784.1_g000019
rosa_roxburghii Rroxscaffold_2G00130640
rosa_rugosa Rorug02G0194100
rosa_samantha Rh2AG252600 Rh2BG262200 Rh2CG257100 Rh2DG260800
rosa_wichuraiana Rw2G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 432
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 378
AfiI CCNNNNNNNGG 2 cut(s) 12, 437
AgsI TTSAA 3 cut(s) 260, 421, 469
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw26I GTCTC 2 cut(s) 125, 218
AlwI GGATC 1 cut(s) 432
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 2 cut(s) 3, 94
ApeKI GCWGC 2 cut(s) 199, 303
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 274
AsuC2I CCSGG 4 cut(s) 48, 156, 335, 336
AsuHPI GGTGA 1 cut(s) 355
AvaI CYCGRG 1 cut(s) 334
AvaII GGWCC 1 cut(s) 274
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 2 cut(s) 211, 315
BccI CCATC 1 cut(s) 14
BceAI ACGGC 3 cut(s) 102, 391, 415
BclI TGATCA 1 cut(s) 475
BcnI CCSGG 4 cut(s) 48, 156, 335, 336
BcoDI GTCTC 2 cut(s) 125, 218
BfaI CTAG 1 cut(s) 12
BisI GCNGC 3 cut(s) 97, 200, 304
BlsI GCNGC 3 cut(s) 98, 201, 305
Bme1390I CCNGG 4 cut(s) 48, 156, 335, 336
Bme18I GGWCC 1 cut(s) 274
BmeT110I CYCGRG 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 274
BmrFI CCNGG 4 cut(s) 48, 156, 335, 336
BmrI ACTGGG 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 302
BpuMI CCSGG 4 cut(s) 48, 156, 335, 336
BsaHI GRCGYC 1 cut(s) 378
BsaI GGTCTC 2 cut(s) 125, 218
BsaJI CCNNGG 3 cut(s) 47, 91, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 437
Bse1I ACTGG 2 cut(s) 241, 308
BseDI CCNNGG 3 cut(s) 47, 91, 334
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 12, 437
BseNI ACTGG 2 cut(s) 241, 308
BseXI GCAGC 2 cut(s) 211, 315
BseYI CCCAGC 1 cut(s) 437
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 2 cut(s) 5, 96
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 4 cut(s) 47, 156, 335, 482
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 2 cut(s) 12, 437
BsmAI GTCTC 2 cut(s) 125, 218
BsmFI GGGAC 1 cut(s) 351
BsnI GGCC 2 cut(s) 5, 96
Bso31I GGTCTC 2 cut(s) 125, 218
BsoBI CYCGRG 1 cut(s) 334
Bsp143I GATC 2 cut(s) 424, 475
BspACI CCGC 1 cut(s) 97
BspANI GGCC 2 cut(s) 5, 96
BspFNI CGCG 1 cut(s) 99
BspPI GGATC 1 cut(s) 432
BspTNI GGTCTC 2 cut(s) 125, 218
BsrI ACTGG 2 cut(s) 241, 308
BssECI CCNNGG 3 cut(s) 47, 91, 334
BssMI GATC 2 cut(s) 424, 475
BssNI GRCGYC 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 91
Bst4CI ACNGT 3 cut(s) 166, 212, 320
BstACI GRCGYC 1 cut(s) 378
BstC8I GCNNGC 2 cut(s) 64, 204
BstEII GGTNACC 1 cut(s) 361
BstF5I GGATG 1 cut(s) 87
BstFNI CGCG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 2 cut(s) 427, 478
BstMAI GTCTC 2 cut(s) 125, 218
BstMBI GATC 2 cut(s) 424, 475
BstMWI GCNNNNNNNGC 4 cut(s) 49, 72, 105, 114
BstPI GGTNACC 1 cut(s) 361
BstSCI CCNGG 4 cut(s) 46, 154, 333, 334
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 211, 315
BsuRI GGCC 2 cut(s) 5, 96
BtsCI GGATG 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 135, 217
Cac8I GCNNGC 2 cut(s) 64, 204
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 274
Cfr9I CCCGGG 1 cut(s) 334
CseI GACGC 3 cut(s) 88, 239, 367
CviAII CATG 2 cut(s) 269, 409
CviJI RGCY 8 cut(s) 5, 52, 96, 202, 306, 430, 437, 481
CviKI_1 RGCY 8 cut(s) 5, 52, 96, 202, 306, 430, 437, 481
DpnI GATC 2 cut(s) 426, 477
DpnII GATC 2 cut(s) 424, 475
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 91
Eco31I GGTCTC 2 cut(s) 125, 218
Eco47I GGWCC 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 334
Eco91I GGTNACC 1 cut(s) 361
EcoO65I GGTNACC 1 cut(s) 361
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 2 cut(s) 272, 412
FaiI YATR 4 cut(s) 244, 270, 410, 474
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 351
FatI CATG 2 cut(s) 268, 408
FbaI TGATCA 1 cut(s) 475
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 97, 200, 304
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 3 cut(s) 97, 200, 304
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 61
GluI GCNGC 3 cut(s) 97, 200, 304
GsaI CCCAGC 1 cut(s) 441
HaeIII GGCC 2 cut(s) 5, 96
HapII CCGG 4 cut(s) 47, 156, 335, 482
HgaI GACGC 3 cut(s) 88, 239, 367
HhaI GCGC 1 cut(s) 62
Hin1I GRCGYC 1 cut(s) 378
Hin1II CATG 2 cut(s) 272, 412
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 2 cut(s) 287, 414
HpaII CCGG 4 cut(s) 47, 156, 335, 482
HphI GGTGA 1 cut(s) 355
Hpy166II GTNNAC 2 cut(s) 103, 344
Hpy8I GTNNAC 2 cut(s) 103, 344
Hpy99I CGWCG 2 cut(s) 233, 383
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 3 cut(s) 166, 212, 320
HpyCH4IV ACGT 3 cut(s) 340, 346, 354
HpyCH4V TGCA 3 cut(s) 161, 180, 199
HpyF10VI GCNNNNNNNGC 4 cut(s) 49, 72, 105, 114
HpySE526I ACGT 3 cut(s) 340, 346, 354
Hsp92I GRCGYC 1 cut(s) 378
Hsp92II CATG 2 cut(s) 272, 412
HspAI GCGC 1 cut(s) 60
Ksp22I TGATCA 1 cut(s) 475
Kzo9I GATC 2 cut(s) 424, 475
LpnPI CCDG 7 cut(s) 60, 169, 172, 222, 321, 348, 423
Lsp1109I GCAGC 2 cut(s) 211, 315
MaeI CTAG 1 cut(s) 12
MaeII ACGT 3 cut(s) 340, 346, 354
MaeIII GTNAC 2 cut(s) 361, 368
MalI GATC 2 cut(s) 426, 477
MboI GATC 2 cut(s) 424, 475
MboII GAAGA 3 cut(s) 272, 409, 458
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 171
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 2 cut(s) 211, 265
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 384
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 47, 156, 335, 482
MspR9I CCNGG 4 cut(s) 48, 156, 335, 336
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 4 cut(s) 49, 72, 105, 114
NciI CCSGG 4 cut(s) 48, 156, 335, 336
NdeII GATC 2 cut(s) 424, 475
NlaIII CATG 2 cut(s) 272, 412
NmuCI GTSAC 1 cut(s) 361
PfeI GAWTC 1 cut(s) 414
PkrI GCNGC 3 cut(s) 98, 201, 305
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PspEI GGTNACC 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 437
PspPI GGNCC 1 cut(s) 274
SaqAI TTAA 1 cut(s) 384
SatI GCNGC 3 cut(s) 97, 200, 304
Sau3AI GATC 2 cut(s) 424, 475
Sau96I GGNCC 1 cut(s) 274
SchI GAGTC 1 cut(s) 296
ScrFI CCNGG 4 cut(s) 48, 156, 335, 336
SetI ASST 5 cut(s) 197, 204, 343, 349, 357
SinI GGWCC 1 cut(s) 274
SmaI CCCGGG 1 cut(s) 336
Sse9I AATT 1 cut(s) 171
SsiI CCGC 1 cut(s) 97
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 4 cut(s) 46, 154, 333, 334
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 3 cut(s) 166, 212, 320
TaiI ACGT 3 cut(s) 343, 349, 357
TaqII GACCGA 1 cut(s) 242
TasI AATT 1 cut(s) 171
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 1 cut(s) 414
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 2 cut(s) 142, 217
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 2 cut(s) 199, 303
Tsp45I GTSAC 1 cut(s) 361
TspMI CCCGGG 1 cut(s) 334
TspRI CASTG 2 cut(s) 142, 217
VpaK11BI GGWCC 1 cut(s) 274
XmaI CCCGGG 1 cut(s) 334
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.