FvH4_1g22044

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016111
Physical Location & Seq
Reverse (-)
13994152 .. 13996077
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22044.t1

Sequence Viewer

Length: 1926 bp
ATGGTGCATTTTCCAAAACTCTCAACTGTTGCTGCATGGAATTCCGCTATACGAGAATCTGCAAACCAAAGCCATCCTCAAAAAGCTCTACGTCTCTTTCACCAAATGAAGCAAAATGGTTTGGAACCTAACAACTTTACCTTTCCCTTCTTAGCTAAAGCATGTGCCAAGCTCTCCAACCTCAAATTATCCCAAACCATTCACACTGATGTTGTAAAATCACCATTTCAGTCTGATATTTTTGTGCAAACAGCTATTCTTGATATGTACGTCAAGTGTGATCGATTGGGTGATGCTTACAACCTATTTGAGAGAATCGCCATGAAAGACACTGCTTCTTGCAACGTGATGCTTATGGGTTTTGTGCAGTCGGGTTTTCTAGATAAAGTGTTTTGTTTGGTCCATGACATGAGGTTTGCTGGGATTCAGCCTGATACAATTACGGTTATGGGGTTGATTCAGGCGAGTTTGACTACAAAGAATTTGGATTTGGTGAAATCTATTCATGCATTTGGAATTCAAATTGGGATAGAATGTGATGTTTCCGTTACTAATACTTGGATCTCTGCCTATTCCAAATGCAATGATTTGGGGTCAGCCAAGGCTGTTTTTGATAGGATTGACATGGGTATGAGGACTGTTGTCTCATGGAATTCGATGATAGCGGGATATTCAAACTCAGATAAATTTGTTGATGTTCTAAATGTTTACAAACAGATGTTGTCTGATGGATACAGACCTGATATAAGCACTATTCTAAGCATCCTTTCTTCATGCAATCAACCCAATAAATTGTTCCAAGGTGTGCTGATTCATTGTCATGGAATTCAACTGGGCTGTGATTCTGACATTTATGTTATTAATGACCTTATATCCATGTATTCCAAGTGCGGTGATTTACCTTCTGCTAGATTTTTATTCGATGGCATGTGTGATAGAACTTGTGTTTCATGGACTGCTATGATCAGCGGATATGCTGAAAATGGGAACATGAACGAGGCTCTTGAGTTGTTTCATTTTATGGAAGCAGCAGGTGAGAAACCTGATCTGGTCACTGTTCTTTCTCTGGTTTCAGGCTGTGGTCATACAGGAACACTTGAGCTTGGAAAATGGATCCATAACTATGCCTTATCAATTGGGTTAAGAGATAATGTAGTAGTTTGCAATGCACTAATTGACATGTATGCAAAATGTGGAGATTTAAACAATGCTCGGGAGCTCTTCTATGCTTTGCCAGTGAGAACTGTTGTTTCCTGGACATCTATAATCTCAGCGTGTGCTCTGAATGGTCAATCCAAGCAAGCTCTGGACCTTTTCTGTCTTATGCTGGAGACGGGCATGAAACCAAACCACTTAACATTTCTTGCTATTCTTCAAGCTTGTACTCATGCAGGTCTGCTTGAGGAAGGAATGAAGTTCTTTAACATGATGACACAAGATTATTATATGATTCCTGGGGTAGATCATTATTCGTGTATGGTCAATCTTCTTGGACGTAAAAGAAAATTAAAAGAAGCAGTTGATCTTGTTAAAAATATGCCGATGAAACCTGATGCTGGCATATGGGGTGCATTACTTAGTGCTTGCAGGATTCACAGTAATTTAGAGTTTGGTGAATATGCATTTAGCCGTCTCCTTGAGTCAGAGCCCGAGGTTGCAGTTCCATATGTGGAGATGGCAAACATATATGCATCAGAGAGAAGGTGGGATGAAGTTGCTACATTAAGAAAAGTGATGAAATCTAACAAAGTGAAAAAATTACCCGGTCAGAGCTTTGTTCATGTTAATGGGAAGCCTCATGTATTTACAGTAGAAGATAGGGGTCATCCTGAAGCCTTACTTATATATGCAATAATAGGTTGTTTGGATTTGCAGTCAAAAGATGAACGCGCCATGCTCCAAGAAGTTGGTGACATGATTAATTAA

Protein Analysis

642

Amino Acids

71.41

Weight (kDa)

6.23

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 9 - 57 4.9e-10 PPR repeat family
PPR_2 PF13041 110 - 154 2.8e-06 PPR repeat family
PPR_2 PF13041 213 - 259 4.1e-08 PPR repeat family
PPR_1 PF12854 311 - 342 2.6e-06 PPR repeat
PPR_2 PF13041 316 - 361 1.5e-10 PPR repeat family
PPR PF01535 316 - 345 3.2e-08 PPR repeat
PPR_2 PF13041 415 - 462 1.7e-09 PPR repeat family
PPR_3 PF13812 416 - 461 1.3e-06 Pentatricopeptide repeat domain
E_motif PF20431 532 - 593 2e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19191
fragaria_vesca FvH4_1g22044
malus_domestica MD15G1334500.v1.1
prunus_persica Prupe.1G178100_v2.0.a1
pyrus_communis pycom15g29090 pycom15g29100
rosa_chinensis RchiOBHm_Chr2g0116121
rosa_laevigata RLG00000018241
rosa_multiflora Rmu_sc0002288.1_g000012
rosa_roxburghii Rroxscaffold_2G00127480
rosa_rugosa Rorug02G0203600
rosa_samantha Rh2BG271000 Rh2CG266300 Rh2DG268200
rosa_wichuraiana Rw2G020360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1022
Acc36I ACCTGC 2 cut(s) 1022, 1382
AccII CGCG 1 cut(s) 1890
AciI CCGC 4 cut(s) 45, 665, 891, 969
AclWI GGATC 3 cut(s) 569, 1108, 1121
AcsI RAATTY 6 cut(s) 40, 481, 516, 652, 686, 825
AcuI CTGAAG 1 cut(s) 1851
AfaI GTAC 2 cut(s) 269, 1384
AfiI CCNNNNNNNGG 1 cut(s) 1556
AflIII ACRYGT 1 cut(s) 1179
AgsI TTSAA 4 cut(s) 521, 675, 830, 1376
AjnI CCWGG 2 cut(s) 1253, 1453
AjuI GAANNNNNNNTTGG 4 cut(s) 473, 505, 779, 811
AluBI AGCT 9 cut(s) 86, 155, 172, 254, 1102, 1219, 1304, 1379, 1773
AluI AGCT 9 cut(s) 86, 155, 172, 254, 1102, 1219, 1304, 1379, 1773
Alw21I GWGCWC 2 cut(s) 1221, 1282
Alw26I GTCTC 4 cut(s) 98, 649, 1325, 1637
AlwI GGATC 3 cut(s) 569, 1108, 1121
Ama87I CYCGRG 2 cut(s) 1212, 1649
ApeKI GCWGC 2 cut(s) 32, 1028
ApoI RAATTY 6 cut(s) 40, 481, 516, 652, 686, 825
ArsI GACNNNNNNTTYG 2 cut(s) 398, 430
AseI ATTAAT 2 cut(s) 861, 1920
AspLEI GCGC 1 cut(s) 1892
AspS9I GGNCC 2 cut(s) 400, 1309
AsuC2I CCSGG 1 cut(s) 1764
AsuHPI GGTGA 8 cut(s) 92, 213, 302, 505, 905, 1046, 1625, 1922
AvaI CYCGRG 2 cut(s) 1212, 1649
AvaII GGWCC 2 cut(s) 400, 1309
BamHI GGATCC 1 cut(s) 1113
BanII GRGCYC 2 cut(s) 1221, 1650
Bbv12I GWGCWC 2 cut(s) 1221, 1282
BbvI GCAGC 2 cut(s) 19, 1040
BccI CCATC 4 cut(s) 81, 722, 917, 1669
BceAI ACGGC 1 cut(s) 1614
BciT130I CCWGG 2 cut(s) 1255, 1455
BciVI GTATCC 1 cut(s) 725
BclI TGATCA 1 cut(s) 963
BcnI CCSGG 1 cut(s) 1764
BcoDI GTCTC 4 cut(s) 98, 649, 1325, 1637
BfaI CTAG 2 cut(s) 380, 909
BfuAI ACCTGC 2 cut(s) 1022, 1382
BfuI GTATCC 1 cut(s) 725
BisI GCNGC 2 cut(s) 33, 1029
BlsI GCNGC 2 cut(s) 34, 1030
Bme1390I CCNGG 3 cut(s) 1255, 1455, 1764
Bme18I GGWCC 2 cut(s) 400, 1309
BmeT110I CYCGRG 2 cut(s) 1212, 1649
BmgT120I GGNCC 2 cut(s) 400, 1309
BmiI GGNNCC 2 cut(s) 126, 1115
BmrFI CCNGG 3 cut(s) 1255, 1455, 1764
BmrI ACTGGG 1 cut(s) 842
BmsI GCATC 5 cut(s) 283, 339, 771, 1543, 1700
BmuI ACTGGG 1 cut(s) 842
BoxI GACNNNNGTC 1 cut(s) 641
BpmI CTGGAG 1 cut(s) 1349
BpuEI CTTGAG 4 cut(s) 1025, 1118, 1421, 1658
BpuMI CCSGG 1 cut(s) 1764
Bsa29I ATCGAT 1 cut(s) 283
BsaJI CCNNGG 4 cut(s) 600, 799, 1454, 1650
Bsc4I CCNNNNNNNGG 1 cut(s) 1556
Bse1I ACTGG 2 cut(s) 837, 1235
Bse3DI GCAATG 2 cut(s) 589, 1171
BseBI CCWGG 2 cut(s) 1255, 1455
BseCI ATCGAT 1 cut(s) 283
BseDI CCNNGG 4 cut(s) 600, 799, 1454, 1650
BseGI GGATG 4 cut(s) 73, 762, 1714, 1825
BseLI CCNNNNNNNGG 1 cut(s) 1556
BseMI GCAATG 2 cut(s) 589, 1171
BseMII CTCAG 2 cut(s) 693, 1284
BseNI ACTGG 2 cut(s) 837, 1235
BseXI GCAGC 2 cut(s) 19, 1040
BseYI CCCAGC 1 cut(s) 419
BsgI GTGCAG 1 cut(s) 386
Bsh1236I CGCG 1 cut(s) 1890
BshVI ATCGAT 1 cut(s) 283
BsiHKAI GWGCWC 2 cut(s) 1221, 1282
BsiHKCI CYCGRG 2 cut(s) 1212, 1649
BsiSI CCGG 1 cut(s) 1764
BslI CCNNNNNNNGG 1 cut(s) 1556
BsmAI GTCTC 4 cut(s) 98, 649, 1325, 1637
BsmBI CGTCTC 3 cut(s) 98, 1325, 1637
BsoBI CYCGRG 2 cut(s) 1212, 1649
Bsp1286I GDGCHC 3 cut(s) 1221, 1282, 1650
Bsp143I GATC 7 cut(s) 280, 561, 963, 1045, 1113, 1462, 1522
BspACI CCGC 4 cut(s) 45, 665, 891, 969
BspCNI CTCAG 2 cut(s) 692, 1283
BspDI ATCGAT 1 cut(s) 283
BspFNI CGCG 1 cut(s) 1890
BspLI GGNNCC 2 cut(s) 126, 1115
BspMI ACCTGC 2 cut(s) 1022, 1382
BspPI GGATC 3 cut(s) 569, 1108, 1121
BspQI GCTCTTC 1 cut(s) 1226
BsrDI GCAATG 2 cut(s) 589, 1171
BsrI ACTGG 2 cut(s) 837, 1235
BssECI CCNNGG 4 cut(s) 600, 799, 1454, 1650
BssMI GATC 7 cut(s) 280, 561, 963, 1045, 1113, 1462, 1522
BssT1I CCWWGG 2 cut(s) 600, 799
Bst2UI CCWGG 2 cut(s) 1255, 1455
Bst4CI ACNGT 7 cut(s) 28, 445, 640, 1057, 1246, 1598, 1810
Bst6I CTCTTC 1 cut(s) 1226
BstC8I GCNNGC 3 cut(s) 1302, 1558, 1585
BstDEI CTNAG 5 cut(s) 151, 679, 758, 1270, 1577
BstF5I GGATG 4 cut(s) 73, 762, 1714, 1825
BstFNI CGCG 1 cut(s) 1890
BstHHI GCGC 1 cut(s) 1892
BstKTI GATC 7 cut(s) 283, 564, 966, 1048, 1116, 1465, 1525
BstMAI GTCTC 4 cut(s) 98, 649, 1325, 1637
BstMBI GATC 7 cut(s) 280, 561, 963, 1045, 1113, 1462, 1522
BstNI CCWGG 2 cut(s) 1255, 1455
BstNSI RCATGY 3 cut(s) 165, 931, 1183
BstPAI GACNNNNGTC 1 cut(s) 641
BstSCI CCNGG 3 cut(s) 1253, 1453, 1762
BstUI CGCG 1 cut(s) 1890
BstV1I GCAGC 2 cut(s) 19, 1040
BstX2I RGATCY 2 cut(s) 561, 1113
BstXI CCANNNNNNTGG 1 cut(s) 1907
BstYI RGATCY 2 cut(s) 561, 1113
Bsu15I ATCGAT 1 cut(s) 283
BsuI GTATCC 1 cut(s) 725
BsuTUI ATCGAT 1 cut(s) 283
BtsCI GGATG 4 cut(s) 73, 762, 1714, 1825
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 4 cut(s) 204, 330, 1053, 1242
BveI ACCTGC 2 cut(s) 1022, 1382
Cac8I GCNNGC 3 cut(s) 1302, 1558, 1585
CfoI GCGC 1 cut(s) 1892
Cfr13I GGNCC 2 cut(s) 400, 1309
ClaI ATCGAT 1 cut(s) 283
Csp6I GTAC 2 cut(s) 268, 1383
CviQI GTAC 2 cut(s) 268, 1383
DdeI CTNAG 5 cut(s) 151, 679, 758, 1270, 1577
DpnI GATC 7 cut(s) 282, 563, 965, 1047, 1115, 1464, 1524
DpnII GATC 7 cut(s) 280, 561, 963, 1045, 1113, 1462, 1522
DraI TTTAAA 1 cut(s) 1203
Eam1104I CTCTTC 1 cut(s) 1226
EarI CTCTTC 1 cut(s) 1226
Ecl136II GAGCTC 1 cut(s) 1219
Eco130I CCWWGG 2 cut(s) 600, 799
Eco24I GRGCYC 2 cut(s) 1221, 1650
Eco47I GGWCC 2 cut(s) 400, 1309
Eco53kI GAGCTC 1 cut(s) 1219
Eco57I CTGAAG 1 cut(s) 1851
Eco88I CYCGRG 2 cut(s) 1212, 1649
EcoICRI GAGCTC 1 cut(s) 1219
EcoRI GAATTC 4 cut(s) 40, 516, 652, 825
EcoRII CCWGG 2 cut(s) 1253, 1453
EcoT14I CCWWGG 2 cut(s) 600, 799
EcoT22I ATGCAT 3 cut(s) 511, 1624, 1693
EcoT38I GRGCYC 2 cut(s) 1221, 1650
ErhI CCWWGG 2 cut(s) 600, 799
Esp3I CGTCTC 3 cut(s) 98, 1325, 1637
FalI AAGNNNNNCTT 2 cut(s) 1824, 1856
FauI CCCGC 1 cut(s) 658
FauNDI CATATG 2 cut(s) 1562, 1666
FbaI TGATCA 1 cut(s) 963
Fnu4HI GCNGC 2 cut(s) 33, 1029
FokI GGATG 4 cut(s) 60, 749, 1721, 1812
FriOI GRGCYC 2 cut(s) 1221, 1650
Fsp4HI GCNGC 2 cut(s) 33, 1029
FspBI CTAG 2 cut(s) 380, 909
GlaI GCGC 1 cut(s) 1891
GluI GCNGC 2 cut(s) 33, 1029
GsaI CCCAGC 1 cut(s) 423
GsuI CTGGAG 1 cut(s) 1349
HapII CCGG 1 cut(s) 1764
HhaI GCGC 1 cut(s) 1892
Hin6I GCGC 1 cut(s) 1890
HinP1I GCGC 1 cut(s) 1890
HindIII AAGCTT 1 cut(s) 1377
HinfI GANTC 9 cut(s) 56, 315, 424, 457, 811, 842, 1450, 1591, 1640
HpaII CCGG 1 cut(s) 1764
HphI GGTGA 8 cut(s) 92, 213, 302, 505, 905, 1046, 1625, 1922
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 8 cut(s) 235, 682, 727, 847, 1284, 1645, 1696, 1770
Hpy188III TCNNGA 6 cut(s) 260, 380, 1004, 1214, 1307, 1829
Hpy8I GTNNAC 1 cut(s) 709
HpyAV CCTTC 4 cut(s) 157, 912, 1400, 1695
HpyCH4III ACNGT 7 cut(s) 28, 445, 640, 1057, 1246, 1598, 1810
HpyCH4IV ACGT 4 cut(s) 91, 270, 345, 1495
HpyF3I CTNAG 5 cut(s) 151, 679, 758, 1270, 1577
HpySE526I ACGT 4 cut(s) 91, 270, 345, 1495
HspAI GCGC 1 cut(s) 1890
Ksp22I TGATCA 1 cut(s) 963
Kzo9I GATC 7 cut(s) 280, 561, 963, 1045, 1113, 1462, 1522
LguI GCTCTTC 1 cut(s) 1226
LmnI GCTCC 2 cut(s) 1216, 1902
Lsp1109I GCAGC 2 cut(s) 19, 1040
LweI GCATC 5 cut(s) 283, 339, 771, 1543, 1700
MaeI CTAG 2 cut(s) 380, 909
MaeII ACGT 4 cut(s) 91, 270, 345, 1495
MaeIII GTNAC 3 cut(s) 547, 1051, 1910
MalI GATC 7 cut(s) 282, 563, 965, 1047, 1115, 1464, 1524
MboI GATC 7 cut(s) 280, 561, 963, 1045, 1113, 1462, 1522
MboII GAAGA 5 cut(s) 762, 1213, 1364, 1478, 1826
MfeI CAATTG 1 cut(s) 1134
MflI RGATCY 2 cut(s) 561, 1113
MhlI GDGCHC 3 cut(s) 1221, 1282, 1650
MlyI GAGTC 1 cut(s) 1649
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 8 cut(s) 87, 191, 405, 627, 991, 1396, 1645, 1806
Mph1103I ATGCAT 3 cut(s) 511, 1624, 1693
MslI CAYNNNNRTG 5 cut(s) 207, 629, 819, 1122, 1785
MspA1I CMGCKG 1 cut(s) 969
MspI CCGG 1 cut(s) 1764
MspR9I CCNGG 3 cut(s) 1255, 1455, 1764
MunI CAATTG 1 cut(s) 1134
MvaI CCWGG 2 cut(s) 1255, 1455
MvnI CGCG 1 cut(s) 1890
NciI CCSGG 1 cut(s) 1764
NdeI CATATG 2 cut(s) 1562, 1666
NdeII GATC 7 cut(s) 280, 561, 963, 1045, 1113, 1462, 1522
NlaIV GGNNCC 2 cut(s) 126, 1115
NmuCI GTSAC 2 cut(s) 1051, 1910
NsiI ATGCAT 3 cut(s) 511, 1624, 1693
NspI RCATGY 3 cut(s) 165, 931, 1183
PacI TTAATTAA 1 cut(s) 1924
PaqCI CACCTGC 1 cut(s) 1022
PciI ACATGT 1 cut(s) 1179
PciSI GCTCTTC 1 cut(s) 1226
PfeI GAWTC 8 cut(s) 56, 315, 424, 457, 811, 842, 1450, 1591
PfoI TCCNGGA 1 cut(s) 1253
PkrI GCNGC 2 cut(s) 34, 1030
PleI GAGTC 1 cut(s) 1648
PpsI GAGTC 1 cut(s) 1648
PscI ACATGT 1 cut(s) 1179
PshAI GACNNNNGTC 1 cut(s) 641
PshBI ATTAAT 2 cut(s) 861, 1920
Psp124BI GAGCTC 1 cut(s) 1221
Psp6I CCWGG 2 cut(s) 1253, 1453
PspFI CCCAGC 1 cut(s) 419
PspGI CCWGG 2 cut(s) 1253, 1453
PspN4I GGNNCC 2 cut(s) 126, 1115
PspPI GGNCC 2 cut(s) 400, 1309
PsuI RGATCY 2 cut(s) 561, 1113
RsaI GTAC 2 cut(s) 269, 1384
RsaNI GTAC 2 cut(s) 268, 1383
RseI CAYNNNNRTG 5 cut(s) 207, 629, 819, 1122, 1785
SacI GAGCTC 1 cut(s) 1221
SapI GCTCTTC 1 cut(s) 1226
SatI GCNGC 2 cut(s) 33, 1029
Sau3AI GATC 7 cut(s) 280, 561, 963, 1045, 1113, 1462, 1522
Sau96I GGNCC 2 cut(s) 400, 1309
SchI GAGTC 1 cut(s) 1649
ScrFI CCNGG 3 cut(s) 1255, 1455, 1764
SduI GDGCHC 3 cut(s) 1221, 1282, 1650
SfaNI GCATC 5 cut(s) 283, 339, 771, 1543, 1700
SinI GGWCC 2 cut(s) 400, 1309
SmiMI CAYNNNNRTG 5 cut(s) 207, 629, 819, 1122, 1785
SmlI CTYRAG 4 cut(s) 1004, 1097, 1400, 1637
SmoI CTYRAG 4 cut(s) 1004, 1097, 1400, 1637
SsiI CCGC 4 cut(s) 45, 665, 891, 969
SspMI CTAG 2 cut(s) 380, 909
SstI GAGCTC 1 cut(s) 1221
StyD4I CCNGG 3 cut(s) 1253, 1453, 1762
StyI CCWWGG 2 cut(s) 600, 799
TaaI ACNGT 7 cut(s) 28, 445, 640, 1057, 1246, 1598, 1810
TaiI ACGT 4 cut(s) 94, 273, 348, 1498
TaqI TCGA 3 cut(s) 283, 656, 921
TatI WGTACW 1 cut(s) 1382
TfiI GAWTC 8 cut(s) 56, 315, 424, 457, 811, 842, 1450, 1591
TscAI CASTG 4 cut(s) 211, 337, 1060, 1242
TseFI GTSAC 2 cut(s) 1051, 1910
TseI GCWGC 2 cut(s) 32, 1028
Tsp45I GTSAC 2 cut(s) 1051, 1910
TspGWI ACGGA 1 cut(s) 535
TspRI CASTG 4 cut(s) 211, 337, 1060, 1242
VpaK11BI GGWCC 2 cut(s) 400, 1309
VspI ATTAAT 2 cut(s) 861, 1920
XapI RAATTY 6 cut(s) 40, 481, 516, 652, 686, 825
XbaI TCTAGA 1 cut(s) 379
XceI RCATGY 3 cut(s) 165, 931, 1183
XcmI CCANNNNNNNNNTGG 1 cut(s) 1303
XspI CTAG 2 cut(s) 380, 909
Zsp2I ATGCAT 3 cut(s) 511, 1624, 1693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.