Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016111

Physical Location & Seq

Genomic Coordinates Reverse (-)

25718506 .. 25720443

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1938 bp

ATGGTCCTCCTTTCAAAACCGTCAAAGAATATTGGTGGTGTGTTTGAGTGGAACTCCGCCATAAGAGAATGTGTGAAGCAAAATCGTTCCCAGAAAGCCCTCCTCCTCTTTCGCCAAATGAAACAAAATGGTCTGGAAGCTGACAACTTCACCTTCCCCTTGCTTGCCAAAGCGTCTACCAATCTGTGCAGCCTCAGATCCTCCCAAATCATTCACTCCAATGTCCTCAAGTCGCCGTTCCGGTCCGATCTCTATGTGCAAACAGCAATGCTTGACATGTACGTCAAGTGCCAACAACTCACTGATGCCTGCCTTCTGTTCGACAGAATTCCTGTGAGAGACGTGGCTTCCTGGAACGTGATGGTTCTCGGTTTTGCGCAATCCGGGTTTCTTGATAAAGTGTTGGGTTTGTTCCGTGACATGAGGTTTGACGGAATTCTGCCGGATACTGTCACGGTTGTGGGGTTGACTCGAGCAAGTTTGGATACGAAAAATTTGGCATTGGTGAAGTCCGTGCACGCGTTTGGGATTCGAATTGGGATAGATGGAGATGTGTCAATGGCCAACACTTGGATTTCTGCCTATGCCAAGTGCGAGGACTTGAGTTCCGCCATGGCTGTATTTAATGGGGTTGAGATTGGTGTGAGGACTGTTGTGTCTTGGAACTCATTGATAGCAGGATATGGAAGCTTAGAAAAGCTTGTCAATGCTCTAAGTTTTTACAAATGGATGTTGTGTGATGGATATAGGCCCGATACAAGCACTATCGTAAGCCTCCTTTCTTCGTGCATTCAGCCTGATAAACTGTTCCAAGGCGCACTCATTCATTGTCATGGAATTAAACTGGGCTGTGATTCTGATATTTTTGTTGTCAATGCCCTTATATCTATGTATTCCAGATGCGGTGATATTTTATCTTCTCGATTTTTATTTGATGGTATGACTGATAGGACTTGTGTTTCATGGACTGCTATTATCAGTGGGTATGCTGAGAGTAGGGACTTGGACGAGGCGCTAAGGTTGTTTCATGCTATGGAAGTTGCTGGCGTGAAACCCGATTTGGTTACCGTCCTTTCACTGGTTTCAGGCTGCGGCCTAACAGGAGCACTTGAGCTTGGAAAATGGATTCATCAATATGCCTTTTCTAATGGGTTAAGAGACAATATAGTGGTCTGCAATGCATTAATAGACATGTATGCAAAGTGTGGAAATATTATTAGTGCTCGAGAGCTCTTCAATGTCATGCCAGTGAGAACTGTTGTTTCCTGGACAACAATGATCACAGGGTGTGCTTTGAATGGCGAATACAAAGAAGCTCTGGACCTTTTCAGTCTGATGGTGGAGTTTGGATTGAAACCAAACCACATGACGTTTCTTGCCATTCTTCAAGCTTGCACTCATGCAGGGTTGCTTGAGAAAGGATTGGAGCTCTTTCACATGATGAGAGAAGTTTACAACATATATCCCGGGGTAGATCATTATTCCTGTATCGCCGACCTTCTTGGACGTAAAGGGAGGTTAAAAGAAGCAGTGGAGCTTGTTGAAAGTATGCCAGTGAAACCAGATGCTGGCATATGGAGTGCGTTGCTTAGTGCTTGCAAGATTCATCACAACGTAGAGATGGGTGAATACGCTTGTGGTCGTCTATTTGAGTTGGAGCCCGACCTCAAGGGGGCAGTTCCATTCGTGGAGATGGCTAACATATATGCATCGAAGAGAAGGTGGGATGAAGTGGCTGCAGTAAGAAGAGCGATGAAGATTAACAAAGTGAAAAAATTTCCGGGACAAAGCCTTGTTCATGTAAATGGGAAGCCTCACGTGTTTACAGTCGAAGATCGGGGTCATCTTGACAGCGTACTTTTATATGCAACGTTAGATAGTTTGAGTTTGCAGTCGAAAGAAGAATACTGGCCATATTTGGAGGATTTTGTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04330 map04330

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

646

Amino Acids

71.68

Weight (kDa)

6.58

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	14 - 55	4.1e-07	PPR repeat family
PPR_2	PF13041	113 - 153	8.3e-06	PPR repeat family
PPR_2	PF13041	217 - 263	3.4e-08	PPR repeat family
PPR_2	PF13041	320 - 364	3.3e-10	PPR repeat family
PPR	PF01535	320 - 350	1.7e-06	PPR repeat
PPR_2	PF13041	419 - 466	1.6e-10	PPR repeat family
PPR_3	PF13812	420 - 465	1.5e-06	Pentatricopeptide repeat domain
PPR	PF01535	421 - 451	3.3e-08	PPR repeat
E_motif	PF20431	536 - 599	1.6e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19191
fragaria_vesca	FvH4_1g22044
malus_domestica	MD15G1334500.v1.1
prunus_persica	Prupe.1G178100_v2.0.a1
pyrus_communis	pycom15g29090 pycom15g29100
rosa_chinensis	RchiOBHm_Chr2g0116121
rosa_laevigata	RLG00000018241
rosa_multiflora	Rmu_sc0002288.1_g000012
rosa_roxburghii	Rroxscaffold_2G00127480
rosa_rugosa	Rorug02G0203600
rosa_samantha	Rh2BG271000 Rh2CG266300 Rh2DG268200
rosa_wichuraiana	Rw2G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	281, 655
Acc16I	TGCGCA	1 cut(s)	378
AccB7I	CCANNNNNTGG	2 cut(s)	570, 1568
AccI	GTMKAC	1 cut(s)	176
AccII	CGCG	1 cut(s)	521
AciI	CCGC	4 cut(s)	57, 609, 903, 1092
AclI	AACGTT	1 cut(s)	1871
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	2 cut(s)	561, 1910
AcsI	RAATTY	4 cut(s)	327, 435, 493, 1775
AcvI	CACGTG	1 cut(s)	1819
AdeI	CACNNNGTG	1 cut(s)	1287
AfaI	GTAC	2 cut(s)	281, 1857
AfiI	CCNNNNNNNGG	4 cut(s)	570, 1078, 1568, 1672
AflIII	ACRYGT	4 cut(s)	276, 519, 1191, 1818
AgsI	TTSAA	6 cut(s)	15, 1237, 1297, 1354, 1388, 1544
AjiI	CACGTC	1 cut(s)	343
AjnI	CCWGG	2 cut(s)	350, 1265
AjuI	GAANNNNNNNTTGG	2 cut(s)	1043, 1075
AleI	CACNNNNGTG	1 cut(s)	458
AluBI	AGCT	9 cut(s)	140, 690, 700, 1114, 1231, 1316, 1391, 1429, 1537
AluI	AGCT	9 cut(s)	140, 690, 700, 1114, 1231, 1316, 1391, 1429, 1537
Alw21I	GWGCWC	5 cut(s)	519, 1108, 1225, 1233, 1431
Alw26I	GTCTC	2 cut(s)	333, 1152
Alw44I	GTGCAC	1 cut(s)	515
AlwI	GGATC	1 cut(s)	192
AlwNI	CAGNNNCTG	1 cut(s)	1568
Ama87I	CYCGRG	3 cut(s)	471, 1224, 1466
AoxI	GGCC	4 cut(s)	561, 749, 1093, 1910
ApaLI	GTGCAC	1 cut(s)	515
ApeKI	GCWGC	3 cut(s)	189, 1089, 1736
ApoI	RAATTY	4 cut(s)	327, 435, 493, 1775
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AseI	ATTAAT	1 cut(s)	1184
AspLEI	GCGC	3 cut(s)	379, 818, 1015
AspS9I	GGNCC	4 cut(s)	4, 243, 750, 1321
AsuC2I	CCSGG	4 cut(s)	385, 1467, 1468, 1782
AsuHPI	GGTGA	4 cut(s)	142, 517, 917, 1637
AsuII	TTCGAA	1 cut(s)	532
AvaI	CYCGRG	3 cut(s)	471, 1224, 1466
AvaII	GGWCC	3 cut(s)	4, 243, 1321
BaeGI	GKGCMC	1 cut(s)	519
BalI	TGGCCA	2 cut(s)	563, 1912
BanII	GRGCYC	3 cut(s)	1233, 1431, 1662
BbrPI	CACGTG	1 cut(s)	1819
Bbv12I	GWGCWC	5 cut(s)	519, 1108, 1225, 1233, 1431
BbvI	GCAGC	3 cut(s)	201, 1076, 1723
BccI	CCATC	7 cut(s)	355, 539, 734, 929, 1330, 1615, 1687
BceAI	ACGGC	1 cut(s)	220
BciT130I	CCWGG	2 cut(s)	352, 1267
BciVI	GTATCC	2 cut(s)	439, 478
BclI	TGATCA	1 cut(s)	1278
BcnI	CCSGG	4 cut(s)	385, 1467, 1468, 1782
BcoDI	GTCTC	2 cut(s)	333, 1152
BfmI	CTRYAG	1 cut(s)	1737
BfoI	RGCGCY	1 cut(s)	1016
BfuI	GTATCC	2 cut(s)	439, 478
BisI	GCNGC	4 cut(s)	190, 1090, 1093, 1737
BlsI	GCNGC	4 cut(s)	191, 1091, 1094, 1738
Bme1390I	CCNGG	6 cut(s)	352, 385, 1267, 1467, 1468, 1782
Bme18I	GGWCC	3 cut(s)	4, 243, 1321
BmeT110I	CYCGRG	3 cut(s)	471, 1224, 1466
BmgBI	CACGTC	1 cut(s)	343
BmgT120I	GGNCC	4 cut(s)	4, 243, 750, 1321
BmiI	GGNNCC	1 cut(s)	1659
BmrFI	CCNGG	6 cut(s)	352, 385, 1267, 1467, 1468, 1782
BmrI	ACTGGG	1 cut(s)	854
BmsI	GCATC	4 cut(s)	295, 890, 1555, 1718
BmuI	ACTGGG	1 cut(s)	854
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
Bpu10I	CCTNAGC	1 cut(s)	1016
Bpu14I	TTCGAA	1 cut(s)	532
BpuEI	CTTGAG	5 cut(s)	212, 622, 1130, 1433, 1652
BpuMI	CCSGG	4 cut(s)	385, 1467, 1468, 1782
BsaAI	YACGTR	1 cut(s)	1819
BsaJI	CCNNGG	4 cut(s)	612, 811, 1466, 1467
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	4 cut(s)	570, 1078, 1568, 1672
Bse1I	ACTGG	5 cut(s)	849, 1083, 1247, 1553, 1913
Bse3DI	GCAATG	2 cut(s)	273, 1183
BseBI	CCWGG	2 cut(s)	352, 1267
BseDI	CCNNGG	4 cut(s)	612, 811, 1466, 1467
BseGI	GGATG	2 cut(s)	735, 1732
BseLI	CCNNNNNNNGG	4 cut(s)	570, 1078, 1568, 1672
BseMI	GCAATG	2 cut(s)	273, 1183
BseMII	CTCAG	2 cut(s)	208, 981
BseNI	ACTGG	5 cut(s)	849, 1083, 1247, 1553, 1913
BseRI	GAGGAG	2 cut(s)	92, 95
BseSI	GKGCMC	1 cut(s)	519
BseXI	GCAGC	3 cut(s)	201, 1076, 1723
BsgI	GTGCAG	1 cut(s)	208
Bsh1236I	CGCG	1 cut(s)	521
BshFI	GGCC	4 cut(s)	563, 751, 1095, 1912
BsiHKAI	GWGCWC	5 cut(s)	519, 1108, 1225, 1233, 1431
BsiHKCI	CYCGRG	3 cut(s)	471, 1224, 1466
BsiSI	CCGG	5 cut(s)	241, 384, 443, 1467, 1781
BslFI	GGGAC	2 cut(s)	1013, 1797
BslI	CCNNNNNNNGG	4 cut(s)	570, 1078, 1568, 1672
BsmAI	GTCTC	2 cut(s)	333, 1152
BsmBI	CGTCTC	1 cut(s)	333
BsmFI	GGGAC	2 cut(s)	1013, 1797
BsmI	GAATGC	1 cut(s)	789
BsnI	GGCC	4 cut(s)	563, 751, 1095, 1912
BsoBI	CYCGRG	3 cut(s)	471, 1224, 1466
Bsp119I	TTCGAA	1 cut(s)	532
Bsp1286I	GDGCHC	6 cut(s)	519, 1108, 1225, 1233, 1431, 1662
Bsp143I	GATC	5 cut(s)	197, 247, 1278, 1474, 1834
Bsp19I	CCATGG	1 cut(s)	612
BspACI	CCGC	4 cut(s)	57, 609, 903, 1092
BspANI	GGCC	4 cut(s)	563, 751, 1095, 1912
BspCNI	CTCAG	2 cut(s)	207, 982
BspFNI	CGCG	1 cut(s)	521
BspLI	GGNNCC	1 cut(s)	1659
BspMAI	CTGCAG	1 cut(s)	1741
BspPI	GGATC	1 cut(s)	192
BspQI	GCTCTTC	2 cut(s)	1238, 1741
BspT104I	TTCGAA	1 cut(s)	532
BsrDI	GCAATG	2 cut(s)	273, 1183
BsrI	ACTGG	5 cut(s)	849, 1083, 1247, 1553, 1913
BssECI	CCNNGG	4 cut(s)	612, 811, 1466, 1467
BssMI	GATC	5 cut(s)	197, 247, 1278, 1474, 1834
BssT1I	CCWWGG	2 cut(s)	612, 811
Bst2UI	CCWGG	2 cut(s)	352, 1267
Bst4CI	ACNGT	8 cut(s)	21, 451, 457, 652, 807, 1069, 1258, 1828
Bst6I	CTCTTC	3 cut(s)	1238, 1709, 1741
BstBAI	YACGTR	1 cut(s)	1819
BstBI	TTCGAA	1 cut(s)	532
BstC8I	GCNNGC	7 cut(s)	165, 310, 519, 1045, 1393, 1570, 1597
BstDEI	CTNAG	6 cut(s)	194, 691, 713, 990, 1016, 1589
BstDSI	CCRYGG	1 cut(s)	612
BstEII	GGTNACC	1 cut(s)	1063
BstF5I	GGATG	2 cut(s)	735, 1732
BstFNI	CGCG	1 cut(s)	521
BstH2I	RGCGCY	1 cut(s)	1016
BstHHI	GCGC	3 cut(s)	379, 818, 1015
BstKTI	GATC	5 cut(s)	200, 250, 1281, 1477, 1837
BstMAI	GTCTC	2 cut(s)	333, 1152
BstMBI	GATC	5 cut(s)	197, 247, 1278, 1474, 1834
BstNI	CCWGG	2 cut(s)	352, 1267
BstNSI	RCATGY	2 cut(s)	280, 1195
BstPI	GGTNACC	1 cut(s)	1063
BstSCI	CCNGG	6 cut(s)	350, 383, 1265, 1465, 1466, 1780
BstSFI	CTRYAG	1 cut(s)	1737
BstSLI	GKGCMC	1 cut(s)	519
BstUI	CGCG	1 cut(s)	521
BstV1I	GCAGC	3 cut(s)	201, 1076, 1723
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuI	GTATCC	2 cut(s)	439, 478
BsuRI	GGCC	4 cut(s)	563, 751, 1095, 1912
BtgI	CCRYGG	1 cut(s)	612
BtgZI	GCGATG	1 cut(s)	1766
BtrI	CACGTC	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	735, 1732
BtsI	GCAGTG	1 cut(s)	1536
BtsIMutI	CAGTG	6 cut(s)	300, 985, 1076, 1254, 1536, 1560
Cac8I	GCNNGC	7 cut(s)	165, 310, 519, 1045, 1393, 1570, 1597
CaiI	CAGNNNCTG	1 cut(s)	1568
CfoI	GCGC	3 cut(s)	379, 818, 1015
Cfr13I	GGNCC	4 cut(s)	4, 243, 750, 1321
Cfr9I	CCCGGG	1 cut(s)	1466
CpoI	CGGWCCG	1 cut(s)	243
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	280, 1856
CspI	CGGWCCG	1 cut(s)	243
CviQI	GTAC	2 cut(s)	280, 1856
DdeI	CTNAG	6 cut(s)	194, 691, 713, 990, 1016, 1589
DpnI	GATC	5 cut(s)	199, 249, 1280, 1476, 1836
DpnII	GATC	5 cut(s)	197, 247, 1278, 1474, 1834
DraIII	CACNNNGTG	1 cut(s)	1287
DrdI	GACNNNNNNGTC	2 cut(s)	281, 655
DseDI	GACNNNNNNGTC	2 cut(s)	281, 655
EaeI	YGGCCR	2 cut(s)	561, 1910
Eam1104I	CTCTTC	3 cut(s)	1238, 1709, 1741
EarI	CTCTTC	3 cut(s)	1238, 1709, 1741
EciI	GGCGGA	2 cut(s)	46, 598
Ecl136II	GAGCTC	2 cut(s)	1231, 1429
Eco130I	CCWWGG	2 cut(s)	612, 811
Eco24I	GRGCYC	3 cut(s)	1233, 1431, 1662
Eco47I	GGWCC	3 cut(s)	4, 243, 1321
Eco53kI	GAGCTC	2 cut(s)	1231, 1429
Eco72I	CACGTG	1 cut(s)	1819
Eco88I	CYCGRG	3 cut(s)	471, 1224, 1466
Eco91I	GGTNACC	1 cut(s)	1063
EcoICRI	GAGCTC	2 cut(s)	1231, 1429
EcoO65I	GGTNACC	1 cut(s)	1063
EcoRI	GAATTC	2 cut(s)	327, 435
EcoRII	CCWGG	2 cut(s)	350, 1265
EcoT14I	CCWWGG	2 cut(s)	612, 811
EcoT22I	ATGCAT	2 cut(s)	1183, 1711
EcoT38I	GRGCYC	3 cut(s)	1233, 1431, 1662
ErhI	CCWWGG	2 cut(s)	612, 811
Esp3I	CGTCTC	1 cut(s)	333
FaqI	GGGAC	2 cut(s)	1013, 1797
FauNDI	CATATG	1 cut(s)	1574
FbaI	TGATCA	1 cut(s)	1278
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	4 cut(s)	190, 1090, 1093, 1737
FokI	GGATG	2 cut(s)	742, 1739
FriOI	GRGCYC	3 cut(s)	1233, 1431, 1662
Fsp4HI	GCNGC	4 cut(s)	190, 1090, 1093, 1737
FspI	TGCGCA	1 cut(s)	378
GlaI	GCGC	3 cut(s)	378, 817, 1014
GluI	GCNGC	4 cut(s)	190, 1090, 1093, 1737
HaeII	RGCGCY	1 cut(s)	1016
HaeIII	GGCC	4 cut(s)	563, 751, 1095, 1912
HapII	CCGG	5 cut(s)	241, 384, 443, 1467, 1781
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	3 cut(s)	379, 818, 1015
Hin6I	GCGC	3 cut(s)	377, 816, 1013
HinP1I	GCGC	3 cut(s)	377, 816, 1013
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HindIII	AAGCTT	3 cut(s)	688, 698, 1389
HinfI	GANTC	5 cut(s)	469, 529, 854, 1126, 1603
HpaII	CCGG	5 cut(s)	241, 384, 443, 1467, 1781
HphI	GGTGA	4 cut(s)	142, 517, 917, 1637
Hpy166II	GTNNAC	5 cut(s)	177, 468, 517, 1453, 1824
Hpy188I	TCNGA	4 cut(s)	197, 247, 859, 1335
Hpy188III	TCNNGA	7 cut(s)	134, 392, 897, 921, 1226, 1319, 1847
Hpy8I	GTNNAC	5 cut(s)	177, 468, 517, 1453, 1824
HpyAV	CCTTC	4 cut(s)	163, 323, 1508, 1713
HpyCH4III	ACNGT	8 cut(s)	21, 451, 457, 652, 807, 1069, 1258, 1828
HpyCH4IV	ACGT	8 cut(s)	282, 342, 357, 1370, 1507, 1614, 1818, 1871
HpyF3I	CTNAG	6 cut(s)	194, 691, 713, 990, 1016, 1589
HpySE526I	ACGT	8 cut(s)	282, 342, 357, 1370, 1507, 1614, 1818, 1871
HspAI	GCGC	3 cut(s)	377, 816, 1013
Ksp22I	TGATCA	1 cut(s)	1278
Kzo9I	GATC	5 cut(s)	197, 247, 1278, 1474, 1834
LguI	GCTCTTC	2 cut(s)	1238, 1741
LmnI	GCTCC	4 cut(s)	1103, 1426, 1534, 1657
Lsp1109I	GCAGC	3 cut(s)	201, 1076, 1723
LweI	GCATC	4 cut(s)	295, 890, 1555, 1718
MaeII	ACGT	8 cut(s)	282, 342, 357, 1370, 1507, 1614, 1818, 1871
MaeIII	GTNAC	4 cut(s)	416, 451, 1063, 1930
MalI	GATC	5 cut(s)	199, 249, 1280, 1476, 1836
MboI	GATC	5 cut(s)	197, 247, 1278, 1474, 1834
MboII	GAAGA	9 cut(s)	774, 909, 1225, 1376, 1726, 1758, 1768, 1844, 1913
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	6 cut(s)	519, 1108, 1225, 1233, 1431, 1662
MlsI	TGGCCA	2 cut(s)	563, 1912
MluCI	AATT	6 cut(s)	327, 435, 493, 534, 837, 1775
MluI	ACGCGT	1 cut(s)	519
MluNI	TGGCCA	2 cut(s)	563, 1912
MlyI	GAGTC	1 cut(s)	463
MmeI	TCCRAC	1 cut(s)	1635
Mox20I	TGGCCA	2 cut(s)	563, 1912
Mph1103I	ATGCAT	2 cut(s)	1183, 1711
MscI	TGGCCA	2 cut(s)	563, 1912
MseI	TTAA	6 cut(s)	624, 840, 1154, 1184, 1520, 1761
MslI	CAYNNNNRTG	6 cut(s)	219, 458, 831, 1134, 1247, 1803
Msp20I	TGGCCA	2 cut(s)	563, 1912
MspI	CCGG	5 cut(s)	241, 384, 443, 1467, 1781
MspR9I	CCNGG	6 cut(s)	352, 385, 1267, 1467, 1468, 1782
Mva1269I	GAATGC	1 cut(s)	789
MvaI	CCWGG	2 cut(s)	352, 1267
MvnI	CGCG	1 cut(s)	521
NciI	CCSGG	4 cut(s)	385, 1467, 1468, 1782
NcoI	CCATGG	1 cut(s)	612
NdeI	CATATG	1 cut(s)	1574
NdeII	GATC	5 cut(s)	197, 247, 1278, 1474, 1834
NlaIV	GGNNCC	1 cut(s)	1659
NmuCI	GTSAC	3 cut(s)	416, 451, 1930
NsbI	TGCGCA	1 cut(s)	378
NsiI	ATGCAT	2 cut(s)	1183, 1711
NspI	RCATGY	2 cut(s)	280, 1195
NspV	TTCGAA	1 cut(s)	532
OliI	CACNNNNGTG	1 cut(s)	458
PaeR7I	CTCGAG	2 cut(s)	471, 1224
PciI	ACATGT	2 cut(s)	276, 1191
PciSI	GCTCTTC	2 cut(s)	1238, 1741
PctI	GAATGC	1 cut(s)	789
PfeI	GAWTC	4 cut(s)	529, 854, 1126, 1603
PflMI	CCANNNNNTGG	2 cut(s)	570, 1568
PfoI	TCCNGGA	3 cut(s)	350, 1265, 1780
PkrI	GCNGC	4 cut(s)	191, 1091, 1094, 1738
PleI	GAGTC	1 cut(s)	463
PmaCI	CACGTG	1 cut(s)	1819
PmlI	CACGTG	1 cut(s)	1819
PpsI	GAGTC	1 cut(s)	463
Ppu21I	YACGTR	1 cut(s)	1819
PscI	ACATGT	2 cut(s)	276, 1191
PshBI	ATTAAT	1 cut(s)	1184
Psp124BI	GAGCTC	2 cut(s)	1233, 1431
Psp1406I	AACGTT	1 cut(s)	1871
Psp6I	CCWGG	2 cut(s)	350, 1265
PspCI	CACGTG	1 cut(s)	1819
PspEI	GGTNACC	1 cut(s)	1063
PspGI	CCWGG	2 cut(s)	350, 1265
PspN4I	GGNNCC	1 cut(s)	1659
PspPI	GGNCC	4 cut(s)	4, 243, 750, 1321
PspXI	VCTCGAGB	1 cut(s)	471
PstI	CTGCAG	1 cut(s)	1741
PstNI	CAGNNNCTG	1 cut(s)	1568
PsuI	RGATCY	1 cut(s)	197
RsaI	GTAC	2 cut(s)	281, 1857
RsaNI	GTAC	2 cut(s)	280, 1856
RseI	CAYNNNNRTG	6 cut(s)	219, 458, 831, 1134, 1247, 1803
Rsr2I	CGGWCCG	1 cut(s)	243
RsrII	CGGWCCG	1 cut(s)	243
SacI	GAGCTC	2 cut(s)	1233, 1431
SapI	GCTCTTC	2 cut(s)	1238, 1741
SaqAI	TTAA	6 cut(s)	624, 840, 1154, 1184, 1520, 1761
SatI	GCNGC	4 cut(s)	190, 1090, 1093, 1737
Sau3AI	GATC	5 cut(s)	197, 247, 1278, 1474, 1834
Sau96I	GGNCC	4 cut(s)	4, 243, 750, 1321
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	6 cut(s)	352, 385, 1267, 1467, 1468, 1782
SduI	GDGCHC	6 cut(s)	519, 1108, 1225, 1233, 1431, 1662
SfaNI	GCATC	4 cut(s)	295, 890, 1555, 1718
SfcI	CTRYAG	1 cut(s)	1737
Sfr274I	CTCGAG	2 cut(s)	471, 1224
SfuI	TTCGAA	1 cut(s)	532
SinI	GGWCC	3 cut(s)	4, 243, 1321
SlaI	CTCGAG	2 cut(s)	471, 1224
SmaI	CCCGGG	1 cut(s)	1468
SmiMI	CAYNNNNRTG	6 cut(s)	219, 458, 831, 1134, 1247, 1803
SmlI	CTYRAG	7 cut(s)	227, 471, 601, 1109, 1224, 1412, 1667
SmoI	CTYRAG	7 cut(s)	227, 471, 601, 1109, 1224, 1412, 1667
Sse9I	AATT	6 cut(s)	327, 435, 493, 534, 837, 1775
SsiI	CCGC	4 cut(s)	57, 609, 903, 1092
SspI	AATATT	2 cut(s)	31, 1213
SstI	GAGCTC	2 cut(s)	1233, 1431
StyD4I	CCNGG	6 cut(s)	350, 383, 1265, 1465, 1466, 1780
StyI	CCWWGG	2 cut(s)	612, 811
TaaI	ACNGT	8 cut(s)	21, 451, 457, 652, 807, 1069, 1258, 1828
TaiI	ACGT	8 cut(s)	285, 345, 360, 1373, 1510, 1617, 1821, 1874
TaqI	TCGA	8 cut(s)	321, 472, 532, 922, 1225, 1712, 1830, 1895
TasI	AATT	6 cut(s)	327, 435, 493, 534, 837, 1775
TauI	GCSGC	1 cut(s)	1095
TfiI	GAWTC	4 cut(s)	529, 854, 1126, 1603
Tru1I	TTAA	6 cut(s)	624, 840, 1154, 1184, 1520, 1761
Tru9I	TTAA	6 cut(s)	624, 840, 1154, 1184, 1520, 1761
TscAI	CASTG	6 cut(s)	307, 985, 1083, 1254, 1536, 1560
TseFI	GTSAC	3 cut(s)	416, 451, 1930
TseI	GCWGC	3 cut(s)	189, 1089, 1736
Tsp45I	GTSAC	3 cut(s)	416, 451, 1930
TspDTI	ATGAA	9 cut(s)	134, 815, 951, 1016, 1118, 1595, 1743, 1769, 1787
TspGWI	ACGGA	3 cut(s)	404, 447, 502
TspMI	CCCGGG	1 cut(s)	1466
TspRI	CASTG	6 cut(s)	307, 985, 1083, 1254, 1536, 1560
Van91I	CCANNNNNTGG	2 cut(s)	570, 1568
VneI	GTGCAC	1 cut(s)	515
VpaK11BI	GGWCC	3 cut(s)	4, 243, 1321
VspI	ATTAAT	1 cut(s)	1184
XapI	RAATTY	4 cut(s)	327, 435, 493, 1775
XceI	RCATGY	2 cut(s)	280, 1195
XhoI	CTCGAG	2 cut(s)	471, 1224
XmaI	CCCGGG	1 cut(s)	1466
XmiI	GTMKAC	1 cut(s)	176
Zsp2I	ATGCAT	2 cut(s)	1183, 1711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.