Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016111

Physical Location & Seq

Genomic Coordinates Reverse (-)

25721858 .. 25722766

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTGTGAAGCAAGATCGTTCCCAAAAAGCCCTCATCCTCTTTCACCAAATGAAACAAAATGGTTTGAAGTTGACAACTTCAACTTCCCCTTGCTTACCAAAGCGTCTGCCAATCTCTGCAGCCTCATATCCTTCCAAATCATTCACTCCAATATCCTCAAGTCGTCATTCTGGTCCAACCTCTATGTGCAAACATCAATGCTTGAAATGTACGTCAAGTACCAACAACTCATTGATGCCTGCCTTCGGTTCGACAGAATTCCCGTGAGAGACGTGGCTTCCTGGAATGTGATGGTCCTCAGTTTTGCGTTTGATGGAATTCTGCCAGATACTGCCACAGTTGTAAGGTTGACTCGCGCAAGTTTGGATATGAAAAATTTGGCATTGGTGAAGTTCGTGCACGCGCTTAGGATTCGAATTGGGATGAATGTAAATGTTTCAGTGGCCAAGACACGTATATTTATATGTGTATATCCTCCTAAATGGACTTCTTTATTTTCTCTCTTTTCAGTATTAGATGGCATTGCGAAGGGTCTTGATCCTCGATTTGACATTACTGAGATAGCCAAACCCATCTGTGCGTTCTATAACTTATTTAGACAGGCTGATAGAGTTGAAAAGCTTGCTGAAATTATACAAAATTGGTACCAACTGATTTTTATCTGTGTGAATACTTTGAATAGCTTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04330 map04330

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

231

Amino Acids

26.41

Weight (kDa)

9.05

Isoelectric Point (pI)

29.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19191
fragaria_vesca	FvH4_1g22044
malus_domestica	MD15G1334500.v1.1
prunus_persica	Prupe.1G178100_v2.0.a1
pyrus_communis	pycom15g29090 pycom15g29100
rosa_chinensis	RchiOBHm_Chr2g0116121
rosa_laevigata	RLG00000018241
rosa_multiflora	Rmu_sc0002288.1_g000012
rosa_roxburghii	Rroxscaffold_2G00127480
rosa_rugosa	Rorug02G0203600
rosa_samantha	Rh2BG271000 Rh2CG266300 Rh2DG268200
rosa_wichuraiana	Rw2G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	691
Acc65I	GGTACC	1 cut(s)	645
AccB1I	GGYRCC	1 cut(s)	645
AccII	CGCG	2 cut(s)	357, 404
AclWI	GGATC	1 cut(s)	533
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	3 cut(s)	258, 318, 376
AfaI	GTAC	3 cut(s)	212, 221, 647
AfiI	CCNNNNNNNGG	1 cut(s)	246
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	5 cut(s)	68, 82, 206, 617, 679
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	2 cut(s)	622, 684
AluI	AGCT	2 cut(s)	622, 684
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	264
Alw44I	GTGCAC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	533
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	444
ApaLI	GTGCAC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	120
ApoI	RAATTY	3 cut(s)	258, 318, 376
Asp718I	GGTACC	1 cut(s)	645
AspLEI	GCGC	2 cut(s)	359, 406
AspS9I	GGNCC	2 cut(s)	174, 295
AsuHPI	GGTGA	2 cut(s)	36, 400
AsuII	TTCGAA	1 cut(s)	415
AvaII	GGWCC	2 cut(s)	174, 295
BaeGI	GKGCMC	1 cut(s)	402
BalI	TGGCCA	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	132
BccI	CCATC	4 cut(s)	286, 308, 512, 581
BciT130I	CCWGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	118
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	283
Bme18I	GGWCC	2 cut(s)	174, 295
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	2 cut(s)	174, 295
BmiI	GGNNCC	1 cut(s)	647
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	407
Bpu14I	TTCGAA	1 cut(s)	415
BpuEI	CTTGAG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	455
BsaBI	GATNNNNATC	1 cut(s)	659
Bsc4I	CCNNNNNNNGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	522
Bse8I	GATNNNNATC	1 cut(s)	659
BseBI	CCWGG	1 cut(s)	283
BseGI	GGATG	2 cut(s)	34, 429
BseJI	GATNNNNATC	1 cut(s)	659
BseLI	CCNNNNNNNGG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	2 cut(s)	313, 549
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	132
Bsh1236I	CGCG	2 cut(s)	357, 404
BshFI	GGCC	1 cut(s)	446
BshNI	GGYRCC	1 cut(s)	645
BsiHKAI	GWGCWC	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	264
BsmBI	CGTCTC	1 cut(s)	264
BsnI	GGCC	1 cut(s)	446
Bsp119I	TTCGAA	1 cut(s)	415
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	2 cut(s)	14, 538
BspANI	GGCC	1 cut(s)	446
BspCNI	CTCAG	2 cut(s)	312, 550
BspFNI	CGCG	2 cut(s)	357, 404
BspLI	GGNNCC	1 cut(s)	647
BspMAI	CTGCAG	1 cut(s)	122
BspPI	GGATC	1 cut(s)	533
BspT104I	TTCGAA	1 cut(s)	415
BspT107I	GGYRCC	1 cut(s)	645
BsrDI	GCAATG	1 cut(s)	522
BssMI	GATC	2 cut(s)	14, 538
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	415
BstC8I	GCNNGC	3 cut(s)	241, 402, 624
BstDEI	CTNAG	3 cut(s)	299, 407, 558
BstF5I	GGATG	2 cut(s)	34, 429
BstFNI	CGCG	2 cut(s)	357, 404
BstHHI	GCGC	2 cut(s)	359, 406
BstKTI	GATC	2 cut(s)	17, 541
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	2 cut(s)	14, 538
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	1 cut(s)	118
BstSLI	GKGCMC	1 cut(s)	402
BstUI	CGCG	2 cut(s)	357, 404
BstV1I	GCAGC	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	446
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	34, 429
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	3 cut(s)	241, 402, 624
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	2 cut(s)	359, 406
Cfr13I	GGNCC	2 cut(s)	174, 295
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	211, 220, 646
CviJI	RGCY	8 cut(s)	30, 123, 278, 446, 566, 605, 622, 684
CviKI_1	RGCY	8 cut(s)	30, 123, 278, 446, 566, 605, 622, 684
CviQI	GTAC	3 cut(s)	211, 220, 646
DdeI	CTNAG	3 cut(s)	299, 407, 558
DpnI	GATC	2 cut(s)	16, 540
DpnII	GATC	2 cut(s)	14, 538
EaeI	YGGCCR	1 cut(s)	444
Eco47I	GGWCC	2 cut(s)	174, 295
EcoRI	GAATTC	2 cut(s)	258, 318
EcoRII	CCWGG	1 cut(s)	281
Esp3I	CGTCTC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	2 cut(s)	21, 436
Fsp4HI	GCNGC	1 cut(s)	121
GlaI	GCGC	2 cut(s)	358, 405
GluI	GCNGC	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	446
HgaI	GACGC	1 cut(s)	93
HhaI	GCGC	2 cut(s)	359, 406
Hin6I	GCGC	2 cut(s)	357, 404
HinP1I	GCGC	2 cut(s)	357, 404
HincII	GTYRAC	2 cut(s)	73, 351
HindII	GTYRAC	2 cut(s)	73, 351
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	2 cut(s)	352, 412
HphI	GGTGA	2 cut(s)	36, 400
Hpy166II	GTNNAC	3 cut(s)	73, 351, 400
Hpy188III	TCNNGA	1 cut(s)	536
Hpy8I	GTNNAC	3 cut(s)	73, 351, 400
HpyAV	CCTTC	3 cut(s)	142, 254, 523
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	3 cut(s)	213, 273, 454
HpyCH4V	TGCA	3 cut(s)	120, 190, 400
HpyF3I	CTNAG	3 cut(s)	299, 407, 558
HpySE526I	ACGT	3 cut(s)	213, 273, 454
HspAI	GCGC	2 cut(s)	357, 404
KpnI	GGTACC	1 cut(s)	649
Kzo9I	GATC	2 cut(s)	14, 538
LpnPI	CCDG	6 cut(s)	157, 253, 268, 295, 339, 587
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	1 cut(s)	226
MaeII	ACGT	3 cut(s)	213, 273, 454
MalI	GATC	2 cut(s)	16, 540
MboI	GATC	2 cut(s)	14, 538
MhlI	GDGCHC	1 cut(s)	402
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	6 cut(s)	258, 318, 376, 417, 630, 640
MluNI	TGGCCA	1 cut(s)	446
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	8 cut(s)	42, 48, 134, 167, 191, 308, 486, 552
Mox20I	TGGCCA	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	446
Msp20I	TGGCCA	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	2 cut(s)	357, 404
NdeII	GATC	2 cut(s)	14, 538
NlaIV	GGNNCC	1 cut(s)	647
NspV	TTCGAA	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	412
PfoI	TCCNGGA	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Ppu21I	YACGTR	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	647
PspPI	GGNCC	2 cut(s)	174, 295
PstI	CTGCAG	1 cut(s)	122
PstNI	CAGNNNCTG	1 cut(s)	332
RsaI	GTAC	3 cut(s)	212, 221, 647
RsaNI	GTAC	3 cut(s)	211, 220, 646
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	2 cut(s)	14, 538
Sau96I	GGNCC	2 cut(s)	174, 295
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	7 cut(s)	183, 216, 276, 350, 457, 624, 686
SfaNI	GCATC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	118
SfuI	TTCGAA	1 cut(s)	415
SinI	GGWCC	2 cut(s)	174, 295
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	6 cut(s)	258, 318, 376, 417, 630, 640
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	3 cut(s)	216, 276, 457
TaqI	TCGA	3 cut(s)	252, 415, 544
TasI	AATT	6 cut(s)	258, 318, 376, 417, 630, 640
TfiI	GAWTC	1 cut(s)	412
TscAI	CASTG	1 cut(s)	447
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	3 cut(s)	66, 386, 440
TspRI	CASTG	1 cut(s)	447
VneI	GTGCAC	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	174, 295
XapI	RAATTY	3 cut(s)	258, 318, 376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.