Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0016111

Physical Location & Seq

Genomic Coordinates Forward (+)

62936923 .. 62943807

Gene Structure 6885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00127480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1932 bp

ATGAGACATGGTGCGTTTTCCAAACTCTCAACCGCTGCTGCATGGAATTCCATTATACGAGAATCTGTAAACCAAAGCCATCCCCAAAAAGTCCTCCTTCTGTTTCGTCAGATGAAGCAAAATGGTTTGGAACCTAACAACTTTACCTTTCCCTTCTTGGCTAAAGCATGTGCCAAGCTCTCCAACCTCAAATTATCCCAGACCATTCACACCCATGTTGTAAAATCACCATTTCAGTCTGATATCTTTGTGCAAACAGCTATTCTAGATATGTATGTCAAGTGTAATCAATTGGGTGATGCTTACAACCTGTTCGAGAAAATTACCATGAAAGACACGGCTTCCTGCAATGTGATGCTTATGGGTTTTGTGCAGTCGGGTTTTCTTGATGAAGTGTTATGTTTGGTCCATGACATGAGGTTTGCTGGGATTCAGCCTGATACAATTACGGTTATGGGGTTGATTCAGGCGAGTTTGGCTACAAAGAATTTGGAATTGGTGAAATCTATTCATGCGTTTGGAATTCAAATTGGGATAGAGTGTGATGTTTCGATGGCTAATACTTGGATCTCTGCCTATTCCAAATGTGCTGATTTGGAGTCAGCCAAGGCTGTATTTGATAGGATTGACATGGGTGTGAGGACTGTTGTCTCATGGAATTCGATGATAGCGGGATATTCAAACTCAAATAAATTTCTTGATGTTCTAAATGTTTACAAACAGATGTTGTCTGATGGATACAGACCTGATATAAGCACTATTTTAAGCATCCTTTCTTCCTGCAATCAACCCAATAAATTGGTCCAAGGTATGCTGATTCATTGTCAAGGAATTCAACTGGGCTGTGGTTCTGATATTTTTGTTATCAATGACCTCATATCTATGTATTCCAAGTGTGGTGATATACTTTCTGCTAGGTTTTTATTCGATGGCATGCATGATAGAACTTGTGTCTCATGGACTGCTATGATCAGCGGGTATGCTGAAAATGGGAACCTGAATGAGGCGCTTGAGTTGTTTCATTTTATGGAAGCAGCTGGTGAGAAACCTGATTTGGTTACTGTTCTTTCTCTCATTTCAGGCTGTGGTCATACAGGAGCACTTGATCATGGAAAATGGATCCATAACTATGCCTTTTCAAATGGGTTAAGCGACAATACAGTAGTTTGCAATGCACTAATTGACATGTATGCAAAATGTGGAAATATAAACAATGCTCGAGAGCTCTTCTACACCTTGCCAGTGACAACTGTTGTCTCCTGGACATCTATGATCGCAGGGTATGCTCTGAATGGTCAATACAAGGAAGCTGTGGACCTTTTCTATTTGATGCTGGAGACAGGCATGAAACCAAACCGCTTAACATTTCTTGCTATTCTTCAAGCTTGTACTCATGCAGGTCTGCTTGAGAAAGGAATGGAGTTCTTTAACAAGATGACAGAAGTTTATTATATGAATCCTGGGGTAGATCATTATTCGTGTATGGTCAATCTTCTTGGACGTAAAGGAAAATTAGAAGAAGCAGTGGAGCTTGTTAAAAGTATGCCAATGAAACCTGATGCTGGCATATGGGGTGTGTTACTTAGTGCTTGCAGGATTCACCATAATATGGAGATTGGTGAATACGCATTTAGCCGTCTCCTTGAGTTAGAGCCCCAGGTTGCAGTTCCATATGTGGAGATGGCTAACATATATGCATCACAGAGAAGGTGGGATGAAGTTGCTGCATTAAGAACGGTGATGAAATTTAACAAAGTGAAAAAATTTCCCGGGCAGAGCCTTGTTCATGTCAATGGGAACCCTCATGTATTTACAGTTGAAGATAGTGGTCATCCTGAAGCCTTATTTATATATGCAATGATAGGTACTTTGGATTTGCAGTTGAAAGAAGAACACACCACGCTCAAAGAGGTTGGTGACATGATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04330 map04330

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

643

Amino Acids

71.6

Weight (kDa)

6.06

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	13 - 59	1.5e-08	PPR repeat family
PPR_2	PF13041	112 - 156	6.6e-06	PPR repeat family
PPR_2	PF13041	215 - 261	1.9e-08	PPR repeat family
PPR	PF01535	217 - 246	8.9e-06	PPR repeat
PPR_1	PF12854	315 - 344	5.2e-06	PPR repeat
PPR_2	PF13041	318 - 363	7.5e-11	PPR repeat family
PPR	PF01535	318 - 347	4.8e-08	PPR repeat
PPR_2	PF13041	417 - 464	9.3e-10	PPR repeat family
PPR_3	PF13812	418 - 463	2.6e-06	Pentatricopeptide repeat domain
PPR	PF01535	419 - 448	2.3e-07	PPR repeat
E_motif	PF20431	534 - 595	2.4e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19191
fragaria_vesca	FvH4_1g22044
malus_domestica	MD15G1334500.v1.1
prunus_persica	Prupe.1G178100_v2.0.a1
pyrus_communis	pycom15g29090 pycom15g29100
rosa_chinensis	RchiOBHm_Chr2g0116121
rosa_laevigata	RLG00000018241
rosa_multiflora	Rmu_sc0002288.1_g000012
rosa_roxburghii	Rroxscaffold_2G00127480
rosa_rugosa	Rorug02G0203600
rosa_samantha	Rh2BG271000 Rh2CG266300 Rh2DG268200
rosa_wichuraiana	Rw2G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1388
AccB7I	CCANNNNNTGG	1 cut(s)	1609
AciI	CCGC	4 cut(s)	33, 671, 975, 1357
AclWI	GGATC	3 cut(s)	575, 1114, 1127
AcsI	RAATTY	8 cut(s)	46, 487, 522, 658, 692, 831, 1745, 1763
AcuI	CTGAAG	1 cut(s)	1857
AfaI	GTAC	2 cut(s)	1390, 1867
AfiI	CCNNNNNNNGG	3 cut(s)	1003, 1562, 1609
AflIII	ACRYGT	1 cut(s)	1185
AgsI	TTSAA	7 cut(s)	527, 681, 836, 1140, 1382, 1820, 1885
AjnI	CCWGG	3 cut(s)	1259, 1459, 1656
AjuI	GAANNNNNNNTTGG	4 cut(s)	479, 511, 1037, 1069
AluBI	AGCT	7 cut(s)	178, 260, 1037, 1225, 1310, 1385, 1531
AluI	AGCT	7 cut(s)	178, 260, 1037, 1225, 1310, 1385, 1531
Alw21I	GWGCWC	2 cut(s)	1102, 1227
Alw26I	GTCTC	5 cut(s)	655, 958, 1261, 1331, 1643
AlwI	GGATC	3 cut(s)	575, 1114, 1127
Ama87I	CYCGRG	2 cut(s)	1218, 1769
ApeKI	GCWGC	4 cut(s)	35, 38, 1034, 1724
ApoI	RAATTY	8 cut(s)	46, 487, 522, 658, 692, 831, 1745, 1763
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AseI	ATTAAT	1 cut(s)	1926
AspLEI	GCGC	1 cut(s)	1009
AspS9I	GGNCC	3 cut(s)	406, 802, 1315
AsuC2I	CCSGG	2 cut(s)	1770, 1771
AsuHPI	GGTGA	9 cut(s)	219, 308, 511, 911, 1052, 1592, 1631, 1750, 1928
AvaI	CYCGRG	2 cut(s)	1218, 1769
AvaII	GGWCC	3 cut(s)	406, 802, 1315
BamHI	GGATCC	1 cut(s)	1119
BanII	GRGCYC	2 cut(s)	1227, 1656
Bbv12I	GWGCWC	2 cut(s)	1102, 1227
BbvI	GCAGC	4 cut(s)	22, 25, 1046, 1711
BccI	CCATC	5 cut(s)	87, 547, 728, 923, 1675
BceAI	ACGGC	2 cut(s)	354, 1620
BciT130I	CCWGG	3 cut(s)	1261, 1461, 1658
BciVI	GTATCC	1 cut(s)	731
BclI	TGATCA	2 cut(s)	969, 1105
BcnI	CCSGG	2 cut(s)	1770, 1771
BcoDI	GTCTC	5 cut(s)	655, 958, 1261, 1331, 1643
BfaI	CTAG	2 cut(s)	266, 915
BfoI	RGCGCY	1 cut(s)	1010
BfuAI	ACCTGC	1 cut(s)	1388
BfuI	GTATCC	1 cut(s)	731
BisI	GCNGC	4 cut(s)	36, 39, 1035, 1725
BlsI	GCNGC	4 cut(s)	37, 40, 1036, 1726
Bme1390I	CCNGG	5 cut(s)	1261, 1461, 1658, 1770, 1771
Bme18I	GGWCC	3 cut(s)	406, 802, 1315
BmeT110I	CYCGRG	2 cut(s)	1218, 1769
BmgT120I	GGNCC	3 cut(s)	406, 802, 1315
BmiI	GGNNCC	4 cut(s)	132, 995, 1121, 1799
BmrFI	CCNGG	5 cut(s)	1261, 1461, 1658, 1770, 1771
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	6 cut(s)	289, 345, 777, 1320, 1549, 1706
BmuI	ACTGGG	1 cut(s)	848
BoxI	GACNNNNGTC	1 cut(s)	647
BpmI	CTGGAG	1 cut(s)	1355
BpuEI	CTTGAG	3 cut(s)	1031, 1427, 1664
BpuMI	CCSGG	2 cut(s)	1770, 1771
BsaJI	CCNNGG	5 cut(s)	606, 805, 1460, 1656, 1769
Bsc4I	CCNNNNNNNGG	3 cut(s)	1003, 1562, 1609
Bse1I	ACTGG	2 cut(s)	843, 1241
Bse3DI	GCAATG	3 cut(s)	355, 1177, 1863
BseBI	CCWGG	3 cut(s)	1261, 1461, 1658
BseDI	CCNNGG	5 cut(s)	606, 805, 1460, 1656, 1769
BseGI	GGATG	4 cut(s)	79, 768, 1720, 1831
BseLI	CCNNNNNNNGG	3 cut(s)	1003, 1562, 1609
BseMI	GCAATG	3 cut(s)	355, 1177, 1863
BseNI	ACTGG	2 cut(s)	843, 1241
BseXI	GCAGC	4 cut(s)	22, 25, 1046, 1711
BseYI	CCCAGC	1 cut(s)	425
BsgI	GTGCAG	1 cut(s)	392
BsiHKAI	GWGCWC	2 cut(s)	1102, 1227
BsiHKCI	CYCGRG	2 cut(s)	1218, 1769
BsiSI	CCGG	1 cut(s)	1770
BslI	CCNNNNNNNGG	3 cut(s)	1003, 1562, 1609
BsmAI	GTCTC	5 cut(s)	655, 958, 1261, 1331, 1643
BsmBI	CGTCTC	1 cut(s)	1643
BsoBI	CYCGRG	2 cut(s)	1218, 1769
Bsp1286I	GDGCHC	3 cut(s)	1102, 1227, 1656
Bsp143I	GATC	6 cut(s)	567, 969, 1105, 1119, 1272, 1468
BspACI	CCGC	4 cut(s)	33, 671, 975, 1357
BspLI	GGNNCC	4 cut(s)	132, 995, 1121, 1799
BspMI	ACCTGC	1 cut(s)	1388
BspPI	GGATC	3 cut(s)	575, 1114, 1127
BspQI	GCTCTTC	1 cut(s)	1232
BsrDI	GCAATG	3 cut(s)	355, 1177, 1863
BsrI	ACTGG	2 cut(s)	843, 1241
BssECI	CCNNGG	5 cut(s)	606, 805, 1460, 1656, 1769
BssMI	GATC	6 cut(s)	567, 969, 1105, 1119, 1272, 1468
BssT1I	CCWWGG	2 cut(s)	606, 805
Bst2UI	CCWGG	3 cut(s)	1261, 1461, 1658
Bst4CI	ACNGT	7 cut(s)	451, 646, 1063, 1162, 1252, 1738, 1816
Bst6I	CTCTTC	1 cut(s)	1232
BstAPI	GCANNNNNTGC	1 cut(s)	1283
BstC8I	GCNNGC	3 cut(s)	935, 1564, 1591
BstDEI	CTNAG	1 cut(s)	1583
BstENI	CCTNNNNNAGG	1 cut(s)	1001
BstF5I	GGATG	4 cut(s)	79, 768, 1720, 1831
BstH2I	RGCGCY	1 cut(s)	1010
BstHHI	GCGC	1 cut(s)	1009
BstKTI	GATC	6 cut(s)	570, 972, 1108, 1122, 1275, 1471
BstMAI	GTCTC	5 cut(s)	655, 958, 1261, 1331, 1643
BstMBI	GATC	6 cut(s)	567, 969, 1105, 1119, 1272, 1468
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 1283
BstNI	CCWGG	3 cut(s)	1261, 1461, 1658
BstNSI	RCATGY	3 cut(s)	171, 937, 1189
BstPAI	GACNNNNGTC	1 cut(s)	647
BstSCI	CCNGG	5 cut(s)	1259, 1459, 1656, 1768, 1769
BstV1I	GCAGC	4 cut(s)	22, 25, 1046, 1711
BstX2I	RGATCY	2 cut(s)	567, 1119
BstXI	CCANNNNNNTGG	1 cut(s)	799
BstYI	RGATCY	2 cut(s)	567, 1119
BsuI	GTATCC	1 cut(s)	731
BtsCI	GGATG	4 cut(s)	79, 768, 1720, 1831
BtsI	GCAGTG	1 cut(s)	1530
BtsIMutI	CAGTG	2 cut(s)	1248, 1530
BveI	ACCTGC	1 cut(s)	1388
Cac8I	GCNNGC	3 cut(s)	935, 1564, 1591
CfoI	GCGC	1 cut(s)	1009
Cfr13I	GGNCC	3 cut(s)	406, 802, 1315
Cfr9I	CCCGGG	1 cut(s)	1769
Csp6I	GTAC	2 cut(s)	1389, 1866
CviQI	GTAC	2 cut(s)	1389, 1866
DdeI	CTNAG	1 cut(s)	1583
DpnI	GATC	6 cut(s)	569, 971, 1107, 1121, 1274, 1470
DpnII	GATC	6 cut(s)	567, 969, 1105, 1119, 1272, 1468
Eam1104I	CTCTTC	1 cut(s)	1232
EarI	CTCTTC	1 cut(s)	1232
Ecl136II	GAGCTC	1 cut(s)	1225
Eco130I	CCWWGG	2 cut(s)	606, 805
Eco24I	GRGCYC	2 cut(s)	1227, 1656
Eco32I	GATATC	1 cut(s)	244
Eco47I	GGWCC	3 cut(s)	406, 802, 1315
Eco53kI	GAGCTC	1 cut(s)	1225
Eco57I	CTGAAG	1 cut(s)	1857
Eco88I	CYCGRG	2 cut(s)	1218, 1769
EcoICRI	GAGCTC	1 cut(s)	1225
EcoNI	CCTNNNNNAGG	1 cut(s)	1001
EcoRI	GAATTC	4 cut(s)	46, 522, 658, 831
EcoRII	CCWGG	3 cut(s)	1259, 1459, 1656
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	606, 805
EcoT22I	ATGCAT	2 cut(s)	939, 1699
EcoT38I	GRGCYC	2 cut(s)	1227, 1656
ErhI	CCWWGG	2 cut(s)	606, 805
Esp3I	CGTCTC	1 cut(s)	1643
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FauI	CCCGC	2 cut(s)	664, 968
FauNDI	CATATG	2 cut(s)	1568, 1672
FbaI	TGATCA	2 cut(s)	969, 1105
Fnu4HI	GCNGC	4 cut(s)	36, 39, 1035, 1725
FokI	GGATG	4 cut(s)	66, 755, 1727, 1818
FriOI	GRGCYC	2 cut(s)	1227, 1656
Fsp4HI	GCNGC	4 cut(s)	36, 39, 1035, 1725
FspBI	CTAG	2 cut(s)	266, 915
GlaI	GCGC	1 cut(s)	1008
GluI	GCNGC	4 cut(s)	36, 39, 1035, 1725
GsaI	CCCAGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	1355
HaeII	RGCGCY	1 cut(s)	1010
HapII	CCGG	1 cut(s)	1770
HhaI	GCGC	1 cut(s)	1009
Hin6I	GCGC	1 cut(s)	1007
HinP1I	GCGC	1 cut(s)	1007
HindIII	AAGCTT	1 cut(s)	1383
HinfI	GANTC	7 cut(s)	62, 430, 463, 599, 817, 1456, 1597
HpaII	CCGG	1 cut(s)	1770
HphI	GGTGA	9 cut(s)	219, 308, 511, 911, 1052, 1592, 1631, 1750, 1928
Hpy166II	GTNNAC	3 cut(s)	70, 715, 1315
Hpy188I	TCNGA	5 cut(s)	111, 241, 733, 853, 1290
Hpy188III	TCNNGA	6 cut(s)	266, 316, 386, 698, 1220, 1835
Hpy8I	GTNNAC	3 cut(s)	70, 715, 1315
HpyAV	CCTTC	3 cut(s)	107, 163, 1701
HpyCH4III	ACNGT	7 cut(s)	451, 646, 1063, 1162, 1252, 1738, 1816
HpyCH4IV	ACGT	1 cut(s)	1501
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 1283
HpyF3I	CTNAG	1 cut(s)	1583
HpySE526I	ACGT	1 cut(s)	1501
HspAI	GCGC	1 cut(s)	1007
Ksp22I	TGATCA	2 cut(s)	969, 1105
Kzo9I	GATC	6 cut(s)	567, 969, 1105, 1119, 1272, 1468
LguI	GCTCTTC	1 cut(s)	1232
LmnI	GCTCC	2 cut(s)	1097, 1528
Lsp1109I	GCAGC	4 cut(s)	22, 25, 1046, 1711
LweI	GCATC	6 cut(s)	289, 345, 777, 1320, 1549, 1706
MaeI	CTAG	2 cut(s)	266, 915
MaeII	ACGT	1 cut(s)	1501
MaeIII	GTNAC	4 cut(s)	1057, 1243, 1578, 1916
MalI	GATC	6 cut(s)	569, 971, 1107, 1121, 1274, 1470
MboI	GATC	6 cut(s)	567, 969, 1105, 1119, 1272, 1468
MboII	GAAGA	7 cut(s)	768, 1219, 1370, 1484, 1529, 1832, 1901
MfeI	CAATTG	1 cut(s)	290
MflI	RGATCY	2 cut(s)	567, 1119
MhlI	GDGCHC	3 cut(s)	1102, 1227, 1656
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	8 cut(s)	104, 197, 411, 633, 884, 997, 1812, 1903
Mph1103I	ATGCAT	2 cut(s)	939, 1699
MseI	TTAA	9 cut(s)	764, 1148, 1361, 1428, 1536, 1730, 1749, 1926, 1930
MslI	CAYNNNNRTG	5 cut(s)	213, 635, 881, 1128, 1791
MspA1I	CMGCKG	3 cut(s)	35, 975, 1037
MspI	CCGG	1 cut(s)	1770
MspR9I	CCNGG	5 cut(s)	1261, 1461, 1658, 1770, 1771
MunI	CAATTG	1 cut(s)	290
MvaI	CCWGG	3 cut(s)	1261, 1461, 1658
MwoI	GCNNNNNNNGC	2 cut(s)	476, 1283
NciI	CCSGG	2 cut(s)	1770, 1771
NdeI	CATATG	2 cut(s)	1568, 1672
NdeII	GATC	6 cut(s)	567, 969, 1105, 1119, 1272, 1468
NlaIV	GGNNCC	4 cut(s)	132, 995, 1121, 1799
NmuCI	GTSAC	2 cut(s)	1243, 1916
NsiI	ATGCAT	2 cut(s)	939, 1699
NspI	RCATGY	3 cut(s)	171, 937, 1189
PacI	TTAATTAA	1 cut(s)	1930
PaeI	GCATGC	1 cut(s)	937
PaeR7I	CTCGAG	1 cut(s)	1218
PciI	ACATGT	1 cut(s)	1185
PciSI	GCTCTTC	1 cut(s)	1232
PfeI	GAWTC	6 cut(s)	62, 430, 463, 817, 1456, 1597
PflMI	CCANNNNNTGG	1 cut(s)	1609
PfoI	TCCNGGA	1 cut(s)	1259
PkrI	GCNGC	4 cut(s)	37, 40, 1036, 1726
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
PscI	ACATGT	1 cut(s)	1185
PshAI	GACNNNNGTC	1 cut(s)	647
PshBI	ATTAAT	1 cut(s)	1926
Psp124BI	GAGCTC	1 cut(s)	1227
Psp6I	CCWGG	3 cut(s)	1259, 1459, 1656
PspFI	CCCAGC	1 cut(s)	425
PspGI	CCWGG	3 cut(s)	1259, 1459, 1656
PspN4I	GGNNCC	4 cut(s)	132, 995, 1121, 1799
PspPI	GGNCC	3 cut(s)	406, 802, 1315
PsuI	RGATCY	2 cut(s)	567, 1119
PvuII	CAGCTG	1 cut(s)	1037
RsaI	GTAC	2 cut(s)	1390, 1867
RsaNI	GTAC	2 cut(s)	1389, 1866
RseI	CAYNNNNRTG	5 cut(s)	213, 635, 881, 1128, 1791
SacI	GAGCTC	1 cut(s)	1227
SapI	GCTCTTC	1 cut(s)	1232
SaqAI	TTAA	9 cut(s)	764, 1148, 1361, 1428, 1536, 1730, 1749, 1926, 1930
SatI	GCNGC	4 cut(s)	36, 39, 1035, 1725
Sau3AI	GATC	6 cut(s)	567, 969, 1105, 1119, 1272, 1468
Sau96I	GGNCC	3 cut(s)	406, 802, 1315
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	5 cut(s)	1261, 1461, 1658, 1770, 1771
SduI	GDGCHC	3 cut(s)	1102, 1227, 1656
SfaNI	GCATC	6 cut(s)	289, 345, 777, 1320, 1549, 1706
Sfr274I	CTCGAG	1 cut(s)	1218
SinI	GGWCC	3 cut(s)	406, 802, 1315
SlaI	CTCGAG	1 cut(s)	1218
SmaI	CCCGGG	1 cut(s)	1771
SmiMI	CAYNNNNRTG	5 cut(s)	213, 635, 881, 1128, 1791
SmlI	CTYRAG	4 cut(s)	1010, 1218, 1406, 1643
SmoI	CTYRAG	4 cut(s)	1010, 1218, 1406, 1643
SphI	GCATGC	1 cut(s)	937
SsiI	CCGC	4 cut(s)	33, 671, 975, 1357
SspMI	CTAG	2 cut(s)	266, 915
SstI	GAGCTC	1 cut(s)	1227
StyD4I	CCNGG	5 cut(s)	1259, 1459, 1656, 1768, 1769
StyI	CCWWGG	2 cut(s)	606, 805
TaaI	ACNGT	7 cut(s)	451, 646, 1063, 1162, 1252, 1738, 1816
TaiI	ACGT	1 cut(s)	1504
TaqI	TCGA	5 cut(s)	315, 551, 662, 927, 1219
TatI	WGTACW	1 cut(s)	1388
TfiI	GAWTC	6 cut(s)	62, 430, 463, 817, 1456, 1597
Tru1I	TTAA	9 cut(s)	764, 1148, 1361, 1428, 1536, 1730, 1749, 1926, 1930
Tru9I	TTAA	9 cut(s)	764, 1148, 1361, 1428, 1536, 1730, 1749, 1926, 1930
TscAI	CASTG	2 cut(s)	1248, 1530
TseFI	GTSAC	2 cut(s)	1243, 1916
TseI	GCWGC	4 cut(s)	35, 38, 1034, 1724
Tsp45I	GTSAC	2 cut(s)	1243, 1916
TspMI	CCCGGG	1 cut(s)	1769
TspRI	CASTG	2 cut(s)	1248, 1530
Van91I	CCANNNNNTGG	1 cut(s)	1609
VpaK11BI	GGWCC	3 cut(s)	406, 802, 1315
VspI	ATTAAT	1 cut(s)	1926
XagI	CCTNNNNNAGG	1 cut(s)	1001
XapI	RAATTY	8 cut(s)	46, 487, 522, 658, 692, 831, 1745, 1763
XbaI	TCTAGA	1 cut(s)	265
XceI	RCATGY	3 cut(s)	171, 937, 1189
XhoI	CTCGAG	1 cut(s)	1218
XmaI	CCCGGG	1 cut(s)	1769
XspI	CTAG	2 cut(s)	266, 915
Zsp2I	ATGCAT	2 cut(s)	939, 1699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.