FvH4_1g22230

4-alpha-glucanotransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
14145634 .. 14150251
4618 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22230.t2

Sequence Viewer

Length: 1440 bp
ATGGCCGTCGCTACTTCTCTCTCACTCCTCCCCTCCACTCTCTCCCCCAAGCTCTCCTCCTCCTCGATCCTCTTCTCCTCCGCTCATTTCCAACCCCGTACCAGACTCCCGCTCTTCCGGGTGAGAAACGCCGCCGTTTCTGCCTCCTCCGGTTACGCCGTCGGCGAGGACTTGCCGCTCGACTACGGCGAGGTCTTCCCCCAGGCGGATCCGAGCGAGCGAAGAAGAGCCGGCGTGCTGCTCCATCCGACGTCATTTAGAGGACCTCACGGCATTGGCGATCTCGGCGAGGAGGCGTTTAGGTTCATCGACTGGCTTCACGACGCCGGGTTTTCACTCTGGCAGGTCCTCCCGCTCGTTCCGCCGGGCCGGAAGGCGAATGAGGAAGGCTCGCCGTACTCTGGACAGGATGCGAATTGCGGAAACACTTTGTTGATATCTCTTGATGAGCTTGTCAAGGATGGTTTGTTGACAAAGGAAGAACTTCCGAATCCGGTTGATGCGGAGCGTGTGAATTACGCAGCCGTTGCTGAAATGAAAGATCCTTTGATAACTAAGGCTGCAGAGAGGCTTATTATGAGTGAAGGCGATCTCAAAAGTCAGCTTGAAGATTTTCGTCGAGACCCTAATATATCATGCTGGCTTGAAGACGCTGCTTACTTTGCTGCAATCGACAGCAGTTTAGATGCTTTTAGCTGGTACGAGTGGCCTGAACCCTTGAAAGATCGTCATCTTGCAGCCTTAGAAGACATTTATCAGAGAAAAGAGCATTTTATAAATTTATTCATCGCCGAACAATTTTTGTTCCAAAGACAATGGCAGCGAGTTCGCAAGTATGCACAGTTGAAGGGGATCAGTATCATGGGAGACATGCCCATATATGTAGGATATCATAGTGCAGATGTTTGGGCCAATAGAAAACATTTTCTGCTGAACAGAAAAGGTTATCCTCTTCTAGTTAGTGGTGTCCCCCCTGATGCCTTCAGTGAAACTGGTCAGCTATGGGGCAGCCCCCTATATGATTGGAAAGCGATGGAGAAAGAGGGATTTTCATGGTGGATACGCCGGATAAGAAGAGCACAAAATATATATGATGCATTCAGAATAGACCACTTCAGAGGACTTGCCGGCTTCTGGGCTGTTCCTTCTGAAGCAAAAGTTGCAATGGTTGGAAAATGGAAGGCAGGGCCTGGAAAATCCTTTTTTGATGCCATATTCAGAGCAGTTGGGAAGACCAACATAATAGCTGAAGATTTGGGAGTTATCACCGAAGACGTAATTCAGCTCAGGAAGTCCATTGGGGCACCTGGAATGGCCGTCCTCCAATTTGGGTTTGGAAGTGATGCCGCTAATCCTCATTTACCTCATAATCATGAGCGCAATCAAGTTGTTTATACTGGAACTCATGATAATGACACGATTTTGAATGAAGCTTGTTAA

Protein Analysis

480

Amino Acids

53.72

Weight (kDa)

5.85

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_77 PF02446 81 - 548 1.7e-154 4-alpha-glucanotransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 776
AatII GACGTC 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 334
AccB1I GGYRCC 1 cut(s) 1303
AccBSI CCGCTC 4 cut(s) 83, 112, 178, 355
AclWI GGATC 5 cut(s) 61, 203, 216, 536, 860
AcoI YGGCCR 2 cut(s) 3, 1314
AcsI RAATTY 1 cut(s) 778
AcuI CTGAAG 4 cut(s) 967, 1099, 1170, 1269
AcyI GRCGYC 2 cut(s) 251, 324
AfaI GTAC 3 cut(s) 100, 398, 701
AfiI CCNNNNNNNGG 3 cut(s) 205, 401, 1134
AgsI TTSAA 5 cut(s) 608, 647, 721, 847, 1426
AjnI CCWGG 3 cut(s) 201, 1189, 1306
AluBI AGCT 8 cut(s) 52, 451, 604, 696, 1000, 1247, 1285, 1433
AluI AGCT 8 cut(s) 52, 451, 604, 696, 1000, 1247, 1285, 1433
Alw21I GWGCWC 1 cut(s) 1081
Alw26I GTCTC 2 cut(s) 615, 861
AlwI GGATC 5 cut(s) 61, 203, 216, 536, 860
AlwNI CAGNNNCTG 1 cut(s) 1190
AoxI GGCC 6 cut(s) 3, 367, 707, 909, 1187, 1314
ApeKI GCWGC 8 cut(s) 238, 521, 560, 653, 665, 737, 820, 1008
ApoI RAATTY 1 cut(s) 778
Asp700I GAANNNNTTC 2 cut(s) 483, 612
AspLEI GCGC 1 cut(s) 1380
AspS9I GGNCC 5 cut(s) 263, 346, 367, 909, 1187
AsuC2I CCSGG 3 cut(s) 119, 328, 366
AsuHPI GGTGA 2 cut(s) 133, 1258
AvaII GGWCC 2 cut(s) 263, 346
BaeGI GKGCMC 1 cut(s) 1306
BamHI GGATCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 1303
BbsI GAAGAC 5 cut(s) 187, 654, 753, 1238, 1278
Bbv12I GWGCWC 1 cut(s) 1081
BbvI GCAGC 8 cut(s) 225, 533, 547, 640, 652, 749, 832, 1020
BccI CCATC 3 cut(s) 252, 455, 1027
BceAI ACGGC 7 cut(s) 119, 143, 202, 286, 379, 509, 1301
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 3 cut(s) 203, 1191, 1308
BciVI GTATCC 1 cut(s) 1053
BcnI CCSGG 3 cut(s) 119, 328, 366
BcoDI GTCTC 2 cut(s) 615, 861
BfaI CTAG 1 cut(s) 956
BfmI CTRYAG 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 334
BfuI GTATCC 1 cut(s) 1053
Bme1390I CCNGG 6 cut(s) 119, 203, 328, 366, 1191, 1308
Bme18I GGWCC 2 cut(s) 263, 346
BmgT120I GGNCC 5 cut(s) 263, 346, 367, 909, 1187
BmiI GGNNCC 2 cut(s) 210, 1305
BmrFI CCNGG 6 cut(s) 119, 203, 328, 366, 1191, 1308
BmsI GCATC 7 cut(s) 400, 490, 676, 967, 1084, 1198, 1333
BpiI GAAGAC 5 cut(s) 187, 654, 753, 1238, 1278
BplI GAGNNNNNCTC 2 cut(s) 374, 406
Bpu10I CCTNAGC 1 cut(s) 1286
BpuMI CCSGG 3 cut(s) 119, 328, 366
BsaBI GATNNNNATC 2 cut(s) 729, 857
BsaHI GRCGYC 2 cut(s) 251, 324
BsaI GGTCTC 1 cut(s) 615
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 2 cut(s) 149, 493
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 401, 1134
Bse118I RCCGGY 2 cut(s) 230, 1127
Bse1I ACTGG 3 cut(s) 317, 997, 1402
Bse3DI GCAATG 1 cut(s) 1170
Bse8I GATNNNNATC 2 cut(s) 729, 857
BseBI CCWGG 3 cut(s) 203, 1191, 1308
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 3 cut(s) 244, 415, 466
BseJI GATNNNNATC 2 cut(s) 729, 857
BseLI CCNNNNNNNGG 3 cut(s) 205, 401, 1134
BseMI GCAATG 1 cut(s) 1170
BseMII CTCAG 1 cut(s) 1300
BseNI ACTGG 3 cut(s) 317, 997, 1402
BseRI GAGGAG 7 cut(s) 17, 46, 49, 52, 67, 136, 305
BseSI GKGCMC 1 cut(s) 1306
BseXI GCAGC 8 cut(s) 225, 533, 547, 640, 652, 749, 832, 1020
BsgI GTGCAG 1 cut(s) 918
BshFI GGCC 6 cut(s) 5, 369, 709, 911, 1189, 1316
BshNI GGYRCC 1 cut(s) 1303
BsiHKAI GWGCWC 1 cut(s) 1081
BsiSI CCGG 9 cut(s) 118, 150, 231, 327, 365, 370, 494, 1066, 1128
BslFI GGGAC 1 cut(s) 953
BslI CCNNNNNNNGG 3 cut(s) 205, 401, 1134
BsmAI GTCTC 2 cut(s) 615, 861
BsmFI GGGAC 1 cut(s) 953
BsmI GAATGC 1 cut(s) 1097
BsnI GGCC 6 cut(s) 5, 369, 709, 911, 1189, 1316
Bso31I GGTCTC 1 cut(s) 615
Bsp1286I GDGCHC 2 cut(s) 1081, 1306
Bsp143I GATC 7 cut(s) 66, 208, 280, 541, 589, 724, 852
BspANI GGCC 6 cut(s) 5, 369, 709, 911, 1189, 1316
BspCNI CTCAG 1 cut(s) 1299
BspHI TCATGA 2 cut(s) 1372, 1405
BspLI GGNNCC 2 cut(s) 210, 1305
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 1 cut(s) 334
BspPI GGATC 5 cut(s) 61, 203, 216, 536, 860
BspQI GCTCTTC 3 cut(s) 119, 220, 1069
BspT107I GGYRCC 1 cut(s) 1303
BspTNI GGTCTC 1 cut(s) 615
BsrBI CCGCTC 4 cut(s) 83, 112, 178, 355
BsrDI GCAATG 1 cut(s) 1170
BsrFI RCCGGY 2 cut(s) 230, 1127
BsrI ACTGG 3 cut(s) 317, 997, 1402
BssAI RCCGGY 2 cut(s) 230, 1127
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 7 cut(s) 66, 208, 280, 541, 589, 724, 852
BssNI GRCGYC 2 cut(s) 251, 324
Bst2UI CCWGG 3 cut(s) 203, 1191, 1308
Bst4CI ACNGT 1 cut(s) 843
Bst6I CTCTTC 5 cut(s) 77, 119, 220, 957, 1069
BstACI GRCGYC 2 cut(s) 251, 324
BstAPI GCANNNNNTGC 2 cut(s) 527, 1160
BstC8I GCNNGC 6 cut(s) 218, 232, 236, 392, 641, 1129
BstDEI CTNAG 3 cut(s) 555, 742, 1286
BstF5I GGATG 3 cut(s) 244, 415, 466
BstHHI GCGC 1 cut(s) 1380
BstKTI GATC 7 cut(s) 69, 211, 283, 544, 592, 727, 855
BstMAI GTCTC 2 cut(s) 615, 861
BstMBI GATC 7 cut(s) 66, 208, 280, 541, 589, 724, 852
BstMWI GCNNNNNNNGC 6 cut(s) 140, 285, 361, 527, 662, 1160
BstNI CCWGG 3 cut(s) 203, 1191, 1308
BstNSI RCATGY 1 cut(s) 874
BstSCI CCNGG 6 cut(s) 117, 201, 326, 364, 1189, 1306
BstSFI CTRYAG 1 cut(s) 561
BstSLI GKGCMC 1 cut(s) 1306
BstV1I GCAGC 8 cut(s) 225, 533, 547, 640, 652, 749, 832, 1020
BstV2I GAAGAC 5 cut(s) 187, 654, 753, 1238, 1278
BstX2I RGATCY 2 cut(s) 208, 541
BstYI RGATCY 2 cut(s) 208, 541
BsuI GTATCC 1 cut(s) 1053
BsuRI GGCC 6 cut(s) 5, 369, 709, 911, 1189, 1316
BtgZI GCGATG 2 cut(s) 772, 1046
BtsCI GGATG 3 cut(s) 244, 415, 466
BtsIMutI CAGTG 1 cut(s) 991
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 6 cut(s) 218, 232, 236, 392, 641, 1129
CaiI CAGNNNCTG 1 cut(s) 1190
CciI TCATGA 2 cut(s) 1372, 1405
CfoI GCGC 1 cut(s) 1380
Cfr10I RCCGGY 2 cut(s) 230, 1127
Cfr13I GGNCC 5 cut(s) 263, 346, 367, 909, 1187
CseI GACGC 2 cut(s) 332, 659
Csp6I GTAC 3 cut(s) 99, 397, 700
CviAII CATG 6 cut(s) 636, 862, 871, 1053, 1373, 1406
CviQI GTAC 3 cut(s) 99, 397, 700
DdeI CTNAG 3 cut(s) 555, 742, 1286
DpnI GATC 7 cut(s) 68, 210, 282, 543, 591, 726, 854
DpnII GATC 7 cut(s) 66, 208, 280, 541, 589, 724, 852
EaeI YGGCCR 2 cut(s) 3, 1314
Eam1104I CTCTTC 5 cut(s) 77, 119, 220, 957, 1069
EarI CTCTTC 5 cut(s) 77, 119, 220, 957, 1069
EciI GGCGGA 2 cut(s) 221, 351
Eco31I GGTCTC 1 cut(s) 615
Eco32I GATATC 2 cut(s) 438, 890
Eco47I GGWCC 2 cut(s) 263, 346
Eco57I CTGAAG 4 cut(s) 967, 1099, 1170, 1269
EcoO109I RGGNCCY 3 cut(s) 263, 346, 1187
EcoRII CCWGG 3 cut(s) 201, 1189, 1306
EcoRV GATATC 2 cut(s) 438, 890
EcoT22I ATGCAT 1 cut(s) 1099
FaeI CATG 6 cut(s) 639, 865, 874, 1056, 1376, 1409
FaqI GGGAC 1 cut(s) 953
FatI CATG 6 cut(s) 635, 861, 870, 1052, 1372, 1405
FauI CCCGC 2 cut(s) 117, 360
FokI GGATG 3 cut(s) 231, 422, 473
FspBI CTAG 1 cut(s) 956
GlaI GCGC 1 cut(s) 1379
HaeIII GGCC 6 cut(s) 5, 369, 709, 911, 1189, 1316
HapII CCGG 9 cut(s) 118, 150, 231, 327, 365, 370, 494, 1066, 1128
HgaI GACGC 2 cut(s) 332, 659
HhaI GCGC 1 cut(s) 1380
Hin1I GRCGYC 2 cut(s) 251, 324
Hin1II CATG 6 cut(s) 639, 865, 874, 1056, 1376, 1409
Hin6I GCGC 1 cut(s) 1378
HinP1I GCGC 1 cut(s) 1378
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HindIII AAGCTT 1 cut(s) 1431
HinfI GANTC 2 cut(s) 105, 490
HpaII CCGG 9 cut(s) 118, 150, 231, 327, 365, 370, 494, 1066, 1128
HphI GGTGA 2 cut(s) 133, 1258
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 8 cut(s) 213, 249, 489, 759, 1103, 1118, 1150, 1220
Hpy188III TCNNGA 7 cut(s) 320, 402, 443, 620, 1288, 1373, 1406
Hpy8I GTNNAC 1 cut(s) 471
Hpy99I CGWCG 5 cut(s) 11, 164, 253, 326, 621
HpyAV CCTTC 7 cut(s) 367, 380, 578, 841, 991, 1155, 1174
HpyCH4III ACNGT 1 cut(s) 843
HpyCH4IV ACGT 2 cut(s) 251, 1275
HpyCH4V TGCA 7 cut(s) 563, 668, 737, 839, 899, 1097, 1163
HpyF10VI GCNNNNNNNGC 6 cut(s) 140, 285, 361, 527, 662, 1160
HpyF3I CTNAG 3 cut(s) 555, 742, 1286
HpySE526I ACGT 2 cut(s) 251, 1275
Hsp92I GRCGYC 2 cut(s) 251, 324
Hsp92II CATG 6 cut(s) 639, 865, 874, 1056, 1376, 1409
HspAI GCGC 1 cut(s) 1378
KroI GCCGGC 2 cut(s) 230, 1127
KroNI GCCGGC 2 cut(s) 232, 1129
Kzo9I GATC 7 cut(s) 66, 208, 280, 541, 589, 724, 852
LguI GCTCTTC 3 cut(s) 119, 220, 1069
LmnI GCTCC 2 cut(s) 246, 505
Lsp1109I GCAGC 8 cut(s) 225, 533, 547, 640, 652, 749, 832, 1020
LweI GCATC 7 cut(s) 400, 490, 676, 967, 1084, 1198, 1333
MaeI CTAG 1 cut(s) 956
MaeII ACGT 2 cut(s) 251, 1275
MaeIII GTNAC 1 cut(s) 152
MalI GATC 7 cut(s) 68, 210, 282, 543, 591, 726, 854
MbiI CCGCTC 4 cut(s) 83, 112, 178, 355
MboI GATC 7 cut(s) 66, 208, 280, 541, 589, 724, 852
MflI RGATCY 2 cut(s) 208, 541
MhlI GDGCHC 2 cut(s) 1081, 1306
MluCI AATT 6 cut(s) 415, 514, 778, 797, 1278, 1325
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 3 cut(s) 115, 272, 1150
Mph1103I ATGCAT 1 cut(s) 1099
MroNI GCCGGC 2 cut(s) 230, 1127
MroXI GAANNNNTTC 2 cut(s) 483, 612
MseI TTAA 1 cut(s) 1438
MslI CAYNNNNRTG 2 cut(s) 1371, 1410
MspI CCGG 9 cut(s) 118, 150, 231, 327, 365, 370, 494, 1066, 1128
MspR9I CCNGG 6 cut(s) 119, 203, 328, 366, 1191, 1308
Mva1269I GAATGC 1 cut(s) 1097
MvaI CCWGG 3 cut(s) 203, 1191, 1308
MwoI GCNNNNNNNGC 6 cut(s) 140, 285, 361, 527, 662, 1160
NaeI GCCGGC 2 cut(s) 232, 1129
NciI CCSGG 3 cut(s) 119, 328, 366
NdeII GATC 7 cut(s) 66, 208, 280, 541, 589, 724, 852
NgoMIV GCCGGC 2 cut(s) 230, 1127
NlaIII CATG 6 cut(s) 639, 865, 874, 1056, 1376, 1409
NlaIV GGNNCC 2 cut(s) 210, 1305
NmeAIII GCCGAG 1 cut(s) 264
NsiI ATGCAT 1 cut(s) 1099
NspI RCATGY 1 cut(s) 874
PagI TCATGA 2 cut(s) 1372, 1405
PciSI GCTCTTC 3 cut(s) 119, 220, 1069
PcsI WCGNNNNNNNCGW 3 cut(s) 162, 186, 276
PctI GAATGC 1 cut(s) 1097
PdiI GCCGGC 2 cut(s) 232, 1129
PdmI GAANNNNTTC 2 cut(s) 483, 612
PfeI GAWTC 1 cut(s) 490
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PpuMI RGGWCCY 2 cut(s) 263, 346
PsiI TTATAA 1 cut(s) 776
Psp5II RGGWCCY 2 cut(s) 263, 346
Psp6I CCWGG 3 cut(s) 201, 1189, 1306
PspGI CCWGG 3 cut(s) 201, 1189, 1306
PspN4I GGNNCC 2 cut(s) 210, 1305
PspPI GGNCC 5 cut(s) 263, 346, 367, 909, 1187
PspPPI RGGWCCY 2 cut(s) 263, 346
PstI CTGCAG 1 cut(s) 565
PstNI CAGNNNCTG 1 cut(s) 1190
PsuI RGATCY 2 cut(s) 208, 541
RsaI GTAC 3 cut(s) 100, 398, 701
RsaNI GTAC 3 cut(s) 99, 397, 700
RseI CAYNNNNRTG 2 cut(s) 1371, 1410
SapI GCTCTTC 3 cut(s) 119, 220, 1069
SaqAI TTAA 1 cut(s) 1438
Sau3AI GATC 7 cut(s) 66, 208, 280, 541, 589, 724, 852
Sau96I GGNCC 5 cut(s) 263, 346, 367, 909, 1187
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 6 cut(s) 119, 203, 328, 366, 1191, 1308
SduI GDGCHC 2 cut(s) 1081, 1306
SfaNI GCATC 7 cut(s) 400, 490, 676, 967, 1084, 1198, 1333
SfcI CTRYAG 1 cut(s) 561
SinI GGWCC 2 cut(s) 263, 346
SmiMI CAYNNNNRTG 2 cut(s) 1371, 1410
Sse9I AATT 6 cut(s) 415, 514, 778, 797, 1278, 1325
SspMI CTAG 1 cut(s) 956
StyD4I CCNGG 6 cut(s) 117, 201, 326, 364, 1189, 1306
TaaI ACNGT 1 cut(s) 843
TaiI ACGT 2 cut(s) 254, 1278
TaqI TCGA 5 cut(s) 65, 180, 309, 619, 672
TasI AATT 6 cut(s) 415, 514, 778, 797, 1278, 1325
TauI GCSGC 3 cut(s) 134, 178, 1349
TfiI GAWTC 1 cut(s) 490
Tru1I TTAA 1 cut(s) 1438
Tru9I TTAA 1 cut(s) 1438
TscAI CASTG 1 cut(s) 991
TseI GCWGC 8 cut(s) 238, 521, 560, 653, 665, 737, 820, 1008
TspDTI ATGAA 4 cut(s) 295, 551, 775, 1041
TspRI CASTG 1 cut(s) 991
VpaK11BI GGWCC 2 cut(s) 263, 346
XapI RAATTY 1 cut(s) 778
XceI RCATGY 1 cut(s) 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 1331
XmnI GAANNNNTTC 2 cut(s) 483, 612
XspI CTAG 1 cut(s) 956
ZraI GACGTC 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.