Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000108.1

Orthogroup ID

OG0008581

Physical Location & Seq

Genomic Coordinates Reverse (-)

17655 .. 23672

Gene Structure 6018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000108.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

atggcaaaccaccatgttgccgcagcacccaaacctcacagtgccgtcctcccgctcgttcctccgggccggaaggccaatgaggaaggatcaccatactccggacaggatgcgaattgcggaaacactttgttgatatctcttgatgagcttgtgaaggatggattgttgacaaaggaagagcttccgaatccagttgatgcggagcgtgtgaattacgcagccgtagctgacatgaaagatcctttgataactaaggctgcagagaggcttattatgagtgaaggtgatcttaaaaggcagcttgaagatttccgcagacaccctgatatatcatgctggcttgaagatgcagctttttttgctgcaattgacagcagtttagatgcttttagctggtacgagtggcctgaacccttgaaagatcgtcatcttgcagccttagaagacatttatcagagcaaagagcattttataaatgtattcattgccgaacaatttttgttccaaaggcagtggcagagagttcgcaagtatgcacagttaaaggggatcagtatcatgggagacatgcccatttatgtaggatatcatagtgcagatgtttgggccaatagaaaacattttttgctgaacagaaaaggttatcctcttctagttagtggtgttccccctgatgccttcagtgaaactggtcagctatggggcagccccctatatgattggaaagcgatggagaaagatggattttcatggtggatacgccgcatacgaagagcacaaaacatatatgatgaattcagaatagaccacttcagagggcttgccggcttctgggctgttccttctgaagcaaaagttgcaatggttggaaaatggaaggcaggacctggaaaatccttttttgatgccatattcagagcagttgggaagaccaacataatagctgaagatttgggtgtcatcactgaggacgtaattcagctcaggaagtccattggggcacctggaatggccgtacttcaatttggttttggaagtgatgctgctaatcctcatttacctcataatcatgagcgcaatcaagttgtttacactggaactcatgataatgacacgattcgaggttggtgggatgttttaccccaagaagagaagtccaatgttctgaaatatctttcaattaatgaagaagaaggtatctcatgggcaatgataaaggttgcgttatcttctgtcgcccaaacagcaatcatgcctatgcaagatattcttaggttaggaagttctgccaggatgaatattcctgcaacacagtttggaaattggggttggaggatgcctggttctgtgagctttgatagcttggagacagaagctttgcaactgaaggagatattgtcgatgtacgggcgcgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000025 GO:0000272 GO:0003674 GO:0003824 GO:0004133 GO:0004134 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0005984 GO:0005996 GO:0006006 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009501 GO:0009507 GO:0009536 GO:0009987 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0055114 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_77

Protein Analysis

473

Amino Acids

53.39

Weight (kDa)

5.85

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64860
fragaria_vesca	FvH4_1g22230 FvH4_1g22230 FvH4_1g22230
malus_domestica	MD15G1333300.v1.1
prunus_persica	Prupe.6G173200_v2.0.a1 Prupe.6G173200_v2.0.a1 Prupe.6G173200_v2.0.a1 Prupe.6G173200_v2.0.a1 Prupe.6G173200_v2.0.a1
pyrus_communis	pycom15g29230
rosa_chinensis	RchiOBHm_Chr2g0116371
rosa_laevigata	RLG00000018263
rosa_multiflora	Rmu_sc0004191.1_g000073 Rmu_sc0037950.1_g000001 Rmu_ssc0000108.1_g000003
rosa_roxburghii	Rroxscaffold_2G00127280
rosa_rugosa	Rorug02G0206000
rosa_samantha	Rh2AG261500 Rh2BG272900 Rh2CG267900 Rh2DG269700
rosa_wichuraiana	Rw2G020520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	1003
AccBSI	CCGCTC	1 cut(s)	55
AccII	CGCG	1 cut(s)	1416
AccIII	TCCGGA	1 cut(s)	101
AciI	CCGC	6 cut(s)	21, 53, 120, 203, 316, 766
AclWI	GGATC	3 cut(s)	97, 236, 560
AcoI	YGGCCR	1 cut(s)	1014
AcsI	RAATTY	1 cut(s)	797
AcuI	CTGAAG	5 cut(s)	667, 799, 870, 969, 1409
AfaI	GTAC	3 cut(s)	401, 1020, 1409
AfiI	CCNNNNNNNGG	2 cut(s)	101, 834
AgsI	TTSAA	5 cut(s)	308, 347, 421, 1025, 1182
AjnI	CCWGG	4 cut(s)	889, 1006, 1292, 1342
AjuI	GAANNNNNNNTTGG	2 cut(s)	1315, 1347
AloI	GAACNNNNNNTCC	2 cut(s)	1330, 1362
Alw21I	GWGCWC	1 cut(s)	781
Alw26I	GTCTC	2 cut(s)	561, 1364
AlwI	GGATC	3 cut(s)	97, 236, 560
AlwNI	CAGNNNCTG	1 cut(s)	890
Aor13HI	TCCGGA	1 cut(s)	101
AoxI	GGCC	5 cut(s)	67, 75, 407, 609, 1014
ApeKI	GCWGC	9 cut(s)	23, 221, 260, 301, 353, 365, 437, 708, 1046
ApoI	RAATTY	1 cut(s)	797
ArsI	GACNNNNNNTTYG	2 cut(s)	1363, 1395
AseI	ATTAAT	1 cut(s)	1185
Asp700I	GAANNNNTTC	1 cut(s)	183
AspLEI	GCGC	2 cut(s)	1080, 1416
AspS9I	GGNCC	3 cut(s)	67, 609, 887
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	2 cut(s)	84, 299
AvaII	GGWCC	1 cut(s)	887
BaeGI	GKGCMC	1 cut(s)	1006
BanI	GGYRCC	1 cut(s)	1003
BbsI	GAAGAC	2 cut(s)	453, 938
Bbv12I	GWGCWC	1 cut(s)	781
BbvI	GCAGC	9 cut(s)	35, 233, 247, 313, 352, 365, 449, 720, 1033
BccI	CCATC	3 cut(s)	155, 727, 737
BceAI	ACGGC	3 cut(s)	29, 209, 1001
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	4 cut(s)	891, 1008, 1294, 1344
BciVI	GTATCC	1 cut(s)	753
BcnI	CCSGG	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	561, 1364
BfaI	CTAG	1 cut(s)	656
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	753
Bme1390I	CCNGG	5 cut(s)	66, 891, 1008, 1294, 1344
Bme18I	GGWCC	1 cut(s)	887
BmgT120I	GGNCC	3 cut(s)	67, 609, 887
BmiI	GGNNCC	1 cut(s)	1005
BmrFI	CCNGG	5 cut(s)	66, 891, 1008, 1294, 1344
BmsI	GCATC	8 cut(s)	100, 190, 340, 376, 667, 898, 1033, 1329
BpiI	GAAGAC	2 cut(s)	453, 938
Bpu10I	CCTNAGC	1 cut(s)	986
BpuMI	CCSGG	1 cut(s)	66
BsaBI	GATNNNNATC	2 cut(s)	429, 557
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	1385, 1415
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 834
Bse118I	RCCGGY	1 cut(s)	827
Bse1I	ACTGG	3 cut(s)	194, 697, 1102
Bse3DI	GCAATG	3 cut(s)	486, 870, 1218
Bse8I	GATNNNNATC	2 cut(s)	429, 557
BseAI	TCCGGA	1 cut(s)	101
BseBI	CCWGG	4 cut(s)	891, 1008, 1294, 1344
BseGI	GGATG	5 cut(s)	115, 166, 1141, 1302, 1344
BseJI	GATNNNNATC	2 cut(s)	429, 557
BseLI	CCNNNNNNNGG	2 cut(s)	101, 834
BseMI	GCAATG	3 cut(s)	486, 870, 1218
BseMII	CTCAG	2 cut(s)	960, 1000
BseNI	ACTGG	3 cut(s)	194, 697, 1102
BseSI	GKGCMC	1 cut(s)	1006
BseXI	GCAGC	9 cut(s)	35, 233, 247, 313, 352, 365, 449, 720, 1033
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	1 cut(s)	1416
BshFI	GGCC	5 cut(s)	69, 77, 409, 611, 1016
BshNI	GGYRCC	1 cut(s)	1003
BsiHKAI	GWGCWC	1 cut(s)	781
BsiSI	CCGG	4 cut(s)	65, 70, 102, 828
BslI	CCNNNNNNNGG	2 cut(s)	101, 834
BsmAI	GTCTC	2 cut(s)	561, 1364
BsnI	GGCC	5 cut(s)	69, 77, 409, 611, 1016
Bsp1286I	GDGCHC	2 cut(s)	781, 1006
Bsp13I	TCCGGA	1 cut(s)	101
Bsp143I	GATC	5 cut(s)	89, 241, 289, 424, 552
BspACI	CCGC	6 cut(s)	21, 53, 120, 203, 316, 766
BspANI	GGCC	5 cut(s)	69, 77, 409, 611, 1016
BspCNI	CTCAG	2 cut(s)	961, 999
BspEI	TCCGGA	1 cut(s)	101
BspFNI	CGCG	1 cut(s)	1416
BspHI	TCATGA	2 cut(s)	1072, 1105
BspLI	GGNNCC	1 cut(s)	1005
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	3 cut(s)	97, 236, 560
BspQI	GCTCTTC	2 cut(s)	174, 769
BspT107I	GGYRCC	1 cut(s)	1003
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	3 cut(s)	486, 870, 1218
BsrFI	RCCGGY	1 cut(s)	827
BsrI	ACTGG	3 cut(s)	194, 697, 1102
BssAI	RCCGGY	1 cut(s)	827
BssMI	GATC	5 cut(s)	89, 241, 289, 424, 552
Bst2UI	CCWGG	4 cut(s)	891, 1008, 1294, 1344
Bst4CI	ACNGT	3 cut(s)	41, 543, 1317
Bst6I	CTCTTC	4 cut(s)	174, 657, 769, 1146
BstAPI	GCANNNNNTGC	1 cut(s)	860
BstC8I	GCNNGC	3 cut(s)	341, 825, 829
BstDEI	CTNAG	5 cut(s)	255, 442, 969, 986, 1274
BstF5I	GGATG	5 cut(s)	115, 166, 1141, 1302, 1344
BstFNI	CGCG	1 cut(s)	1416
BstHHI	GCGC	2 cut(s)	1080, 1416
BstKTI	GATC	5 cut(s)	92, 244, 292, 427, 555
BstMAI	GTCTC	2 cut(s)	561, 1364
BstMBI	GATC	5 cut(s)	89, 241, 289, 424, 552
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 362, 860, 1247, 1362
BstNI	CCWGG	4 cut(s)	891, 1008, 1294, 1344
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	5 cut(s)	64, 889, 1006, 1292, 1342
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	1006
BstUI	CGCG	1 cut(s)	1416
BstV1I	GCAGC	9 cut(s)	35, 233, 247, 313, 352, 365, 449, 720, 1033
BstV2I	GAAGAC	2 cut(s)	453, 938
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BsuI	GTATCC	1 cut(s)	753
BsuRI	GGCC	5 cut(s)	69, 77, 409, 611, 1016
BtgZI	GCGATG	1 cut(s)	746
BtsCI	GGATG	5 cut(s)	115, 166, 1141, 1302, 1344
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	5 cut(s)	46, 521, 691, 966, 1095
Cac8I	GCNNGC	3 cut(s)	341, 825, 829
CaiI	CAGNNNCTG	1 cut(s)	890
CciI	TCATGA	2 cut(s)	1072, 1105
CfoI	GCGC	2 cut(s)	1080, 1416
Cfr10I	RCCGGY	1 cut(s)	827
Cfr13I	GGNCC	3 cut(s)	67, 609, 887
Csp6I	GTAC	3 cut(s)	400, 1019, 1408
CspCI	CAANNNNNGTGG	2 cut(s)	497, 532
CviQI	GTAC	3 cut(s)	400, 1019, 1408
DdeI	CTNAG	5 cut(s)	255, 442, 969, 986, 1274
DpnI	GATC	5 cut(s)	91, 243, 291, 426, 554
DpnII	GATC	5 cut(s)	89, 241, 289, 424, 552
EaeI	YGGCCR	1 cut(s)	1014
Eam1104I	CTCTTC	4 cut(s)	174, 657, 769, 1146
EarI	CTCTTC	4 cut(s)	174, 657, 769, 1146
Eco32I	GATATC	2 cut(s)	138, 590
Eco47I	GGWCC	1 cut(s)	887
Eco57I	CTGAAG	5 cut(s)	667, 799, 870, 969, 1409
EcoO109I	RGGNCCY	1 cut(s)	887
EcoRI	GAATTC	1 cut(s)	797
EcoRII	CCWGG	4 cut(s)	889, 1006, 1292, 1342
EcoRV	GATATC	2 cut(s)	138, 590
FalI	AAGNNNNNCTT	4 cut(s)	276, 308, 1257, 1289
FauI	CCCGC	1 cut(s)	60
FokI	GGATG	5 cut(s)	122, 173, 1148, 1309, 1351
FspBI	CTAG	1 cut(s)	656
GlaI	GCGC	2 cut(s)	1079, 1415
HaeIII	GGCC	5 cut(s)	69, 77, 409, 611, 1016
HapII	CCGG	4 cut(s)	65, 70, 102, 828
HhaI	GCGC	2 cut(s)	1080, 1416
Hin6I	GCGC	2 cut(s)	1078, 1414
HinP1I	GCGC	2 cut(s)	1078, 1414
HincII	GTYRAC	1 cut(s)	171
HindII	GTYRAC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	1377
HinfI	GANTC	2 cut(s)	190, 1120
HpaII	CCGG	4 cut(s)	65, 70, 102, 828
HphI	GGTGA	2 cut(s)	84, 299
Hpy166II	GTNNAC	2 cut(s)	171, 1093
Hpy188I	TCNGA	7 cut(s)	189, 459, 803, 818, 850, 920, 1170
Hpy188III	TCNNGA	5 cut(s)	102, 143, 988, 1073, 1106
Hpy8I	GTNNAC	2 cut(s)	171, 1093
HpyAV	CCTTC	9 cut(s)	67, 80, 151, 278, 691, 855, 874, 1190, 1384
HpyCH4III	ACNGT	3 cut(s)	41, 543, 1317
HpyCH4IV	ACGT	1 cut(s)	975
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 362, 860, 1247, 1362
HpyF3I	CTNAG	5 cut(s)	255, 442, 969, 986, 1274
HpySE526I	ACGT	1 cut(s)	975
HspAI	GCGC	2 cut(s)	1078, 1414
Kpn2I	TCCGGA	1 cut(s)	101
KroI	GCCGGC	1 cut(s)	827
KroNI	GCCGGC	1 cut(s)	829
Kzo9I	GATC	5 cut(s)	89, 241, 289, 424, 552
LguI	GCTCTTC	2 cut(s)	174, 769
LmnI	GCTCC	1 cut(s)	205
Lsp1109I	GCAGC	9 cut(s)	35, 233, 247, 313, 352, 365, 449, 720, 1033
LweI	GCATC	8 cut(s)	100, 190, 340, 376, 667, 898, 1033, 1329
MaeI	CTAG	1 cut(s)	656
MaeII	ACGT	1 cut(s)	975
MalI	GATC	5 cut(s)	91, 243, 291, 426, 554
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	5 cut(s)	89, 241, 289, 424, 552
MfeI	CAATTG	1 cut(s)	369
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	2 cut(s)	781, 1006
MluCI	AATT	9 cut(s)	115, 214, 369, 497, 797, 978, 1025, 1182, 1324
MmeI	TCCRAC	2 cut(s)	850, 1313
MroI	TCCGGA	1 cut(s)	101
MroNI	GCCGGC	1 cut(s)	827
MroXI	GAANNNNTTC	1 cut(s)	183
MseI	TTAA	3 cut(s)	294, 545, 1185
MslI	CAYNNNNRTG	3 cut(s)	1071, 1110, 1259
MspI	CCGG	4 cut(s)	65, 70, 102, 828
MspR9I	CCNGG	5 cut(s)	66, 891, 1008, 1294, 1344
MunI	CAATTG	1 cut(s)	369
MvaI	CCWGG	4 cut(s)	891, 1008, 1294, 1344
MvnI	CGCG	1 cut(s)	1416
MwoI	GCNNNNNNNGC	5 cut(s)	227, 362, 860, 1247, 1362
NaeI	GCCGGC	1 cut(s)	829
NciI	CCSGG	1 cut(s)	66
NdeII	GATC	5 cut(s)	89, 241, 289, 424, 552
NgoMIV	GCCGGC	1 cut(s)	827
NlaIV	GGNNCC	1 cut(s)	1005
NspI	RCATGY	1 cut(s)	574
PagI	TCATGA	2 cut(s)	1072, 1105
PciSI	GCTCTTC	2 cut(s)	174, 769
PcsI	WCGNNNNNNNCGW	1 cut(s)	769
PdiI	GCCGGC	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	190, 1120
PpuMI	RGGWCCY	1 cut(s)	887
PshBI	ATTAAT	1 cut(s)	1185
PsiI	TTATAA	1 cut(s)	476
Psp5II	RGGWCCY	1 cut(s)	887
Psp6I	CCWGG	4 cut(s)	889, 1006, 1292, 1342
PspGI	CCWGG	4 cut(s)	889, 1006, 1292, 1342
PspN4I	GGNNCC	1 cut(s)	1005
PspPI	GGNCC	3 cut(s)	67, 609, 887
PspPPI	RGGWCCY	1 cut(s)	887
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	890
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	3 cut(s)	401, 1020, 1409
RsaNI	GTAC	3 cut(s)	400, 1019, 1408
RseI	CAYNNNNRTG	3 cut(s)	1071, 1110, 1259
SapI	GCTCTTC	2 cut(s)	174, 769
SaqAI	TTAA	3 cut(s)	294, 545, 1185
Sau3AI	GATC	5 cut(s)	89, 241, 289, 424, 552
Sau96I	GGNCC	3 cut(s)	67, 609, 887
ScrFI	CCNGG	5 cut(s)	66, 891, 1008, 1294, 1344
SduI	GDGCHC	2 cut(s)	781, 1006
SfaNI	GCATC	8 cut(s)	100, 190, 340, 376, 667, 898, 1033, 1329
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	887
SmiMI	CAYNNNNRTG	3 cut(s)	1071, 1110, 1259
Sse9I	AATT	9 cut(s)	115, 214, 369, 497, 797, 978, 1025, 1182, 1324
SsiI	CCGC	6 cut(s)	21, 53, 120, 203, 316, 766
SspI	AATATT	1 cut(s)	1303
SspMI	CTAG	1 cut(s)	656
StyD4I	CCNGG	5 cut(s)	64, 889, 1006, 1292, 1342
TaaI	ACNGT	3 cut(s)	41, 543, 1317
TaiI	ACGT	1 cut(s)	978
TaqI	TCGA	2 cut(s)	1123, 1403
TasI	AATT	9 cut(s)	115, 214, 369, 497, 797, 978, 1025, 1182, 1324
TauI	GCSGC	2 cut(s)	23, 768
TfiI	GAWTC	2 cut(s)	190, 1120
Tru1I	TTAA	3 cut(s)	294, 545, 1185
Tru9I	TTAA	3 cut(s)	294, 545, 1185
TscAI	CASTG	5 cut(s)	46, 521, 691, 973, 1102
TseI	GCWGC	9 cut(s)	23, 221, 260, 301, 353, 365, 437, 708, 1046
TspDTI	ATGAA	6 cut(s)	251, 475, 741, 810, 1203, 1313
TspRI	CASTG	5 cut(s)	46, 521, 691, 973, 1102
VpaK11BI	GGWCC	1 cut(s)	887
VspI	ATTAAT	1 cut(s)	1185
XapI	RAATTY	1 cut(s)	797
XceI	RCATGY	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.