pycom15g29230

4-alpha-glucanotransferase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
25965609 .. 25970379
4771 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g29230.4

Sequence Viewer

Length: 1668 bp
ATGGCCTTGAAACTGAATAGCTCTCTCTCACTCCTCCCCTCCACTCTGTCTCCCAAGCTCTCCGCCAACTCCTCCTCCTCCTCCTGCTGCTCAATTTCCACCTCCTCCCTCCTCTCACCCACCCACTTCCAACCCAAAACCAGAATTATTCCATTCCTTCAGAACCCCTGCCCAATGAAATGCTCCGTCCTTTCTCCTCTTGCCGCCAAAGTCGGCGTCGGCGAGGACTGGCCCCTCGACTACGGCGACATGTTCCCCAAGGCCGATCCGAGCGAGCGCAGAAGAGCGGGCGTGCTGCTCCACCCGACGTCGCTCCGTGGACCCCACGGCATTGGCGATCTCGGAGATGAGGCGTTTCGGTTCGTAGATTGGCTTCATGCGGGGGGTTGCTCCCTTTGGCAGGTGCTTCCGCTTGTCCCTCCTGGTCGCAAAGCCAACGAGGAGGGATCCCCTTACTCGGGTCAGGATGCAAATTGTGGTAACACTCTGTTGATATCTCTTGAGGAGCTTGTTAAGGATGGTTTGTTGACAAAGGAAGAGCTTCCAAAACCGATTGATTCTGAGCGTGTGAACTACTCAATTGTTGCTGACATCAAGGATCCTCTAATAACTAAGGCTGCAGAGAGGCTTATTAGGAGTGAAGGTGAACTTAAAAGTCAGCTTGAAGATTTCCGTAATGACCCTGATATATCAAGTTGGCTCGAGGATGCGGCTTATTTTGCAGCAATTGACAGCAGTTTCAATGCTTTCAGTTGGTACGAGTGGCCTGAACCTTTAAAAAATCGCCATCTTGCAGCACTGGAAGAAATTTACCAGAGCAAACAGCATTTTATAAATGTCTTCATTGCCGAACAATTTTTGTTCCAAAGGCAATGGCAGAAAGTTCGCAAGTATGCACAGATGAAGGGAATTAGTATCATGGGAGACATGCCTATTTACGTAGGTTATCACAGTGCAGATGTTTGGGCCAATAAAAAACATTTTTTGCTGAACAGAAATGGTTTTCCTCTTCAAGTTAGCGGCGTTCCCCCTGATGCTTTCAGTGAAACTGGTCAGCTATGGGACAGCCCTCTATATGATTGGAAATCAATGGAGAAAGAAGGATTTTCATGGTGGATACGCCGCATACGAAGAGCACAAAATATATATGATGAATTCAGGATAGACCATTTTAGAGGACTTGCTGGTTTTTGGGCCGTTCCTTCTGAAGCAAAAGTTGCAACAGTTGGACGATGGAAGGCAGGACCTGGAAAATCCTTTTTTGACGCCATATCCAGAGCAGTTGGGAAGATTAACATAATAGCTGAAGACTTGGTTTTGGAAGTGATGCTGCTAACCCTCATTTACCGCATAATCATGAGCCCAATCAAGTTGTTTACACCGGAACTCATGACAATGACACGATTCGAGGTCCTGAAGTATCTTTCAATCACTGAAGAGGATGATATCTCATGGGAACTCATAAAGGCTGCATTATCTTCTGTGGCACGAACAGCAATCATACCTATGCAAGATATTCTTAGGTTGGGAAATTCTGCGAGGATGAACATTCCTGCCACTCAGTTTGGAAACTGGGGTTGGAGGATACCTAGTTCCACGAGCTTTGATAGCTTGGAGTCAGAAACTTTGCAACTGAGGGATATGTTGTCGATGTATGGGCGGCTGTAG

Protein Analysis

556

Amino Acids

62.61

Weight (kDa)

6.07

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 833
AarI CACCTGC 1 cut(s) 391
AatII GACGTC 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 391
AccBSI CCGCTC 1 cut(s) 287
AclWI GGATC 5 cut(s) 260, 441, 454, 593, 606
AcsI RAATTY 3 cut(s) 807, 1154, 1531
AcuI CTGAAG 5 cut(s) 143, 1227, 1326, 1436, 1455
AcyI GRCGYC 3 cut(s) 216, 308, 1266
AfaI GTAC 1 cut(s) 758
AfiI CCNNNNNNNGG 3 cut(s) 400, 457, 458
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 5 cut(s) 10, 665, 742, 1013, 1428
AjnI CCWGG 2 cut(s) 421, 1246
AjuI GAANNNNNNNTTGG 2 cut(s) 1561, 1593
AloI GAACNNNNNNTCC 2 cut(s) 1576, 1608
AluBI AGCT 9 cut(s) 21, 58, 508, 541, 661, 1057, 1304, 1602, 1611
AluI AGCT 9 cut(s) 21, 58, 508, 541, 661, 1057, 1304, 1602, 1611
Alw21I GWGCWC 1 cut(s) 1138
Alw26I GTCTC 2 cut(s) 54, 918
AlwI GGATC 5 cut(s) 260, 441, 454, 593, 606
AlwNI CAGNNNCTG 1 cut(s) 1247
Ama87I CYCGRG 2 cut(s) 457, 701
AoxI GGCC 6 cut(s) 3, 230, 261, 764, 966, 1194
ApeKI GCWGC 7 cut(s) 87, 295, 617, 722, 794, 1330, 1469
ApoI RAATTY 3 cut(s) 807, 1154, 1531
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 6 cut(s) 231, 320, 966, 1194, 1244, 1411
AsuHPI GGTGA 2 cut(s) 108, 656
AvaI CYCGRG 2 cut(s) 457, 701
AvaII GGWCC 3 cut(s) 320, 1244, 1411
BamHI GGATCC 2 cut(s) 446, 598
BanII GRGCYC 1 cut(s) 1364
BarI GAAGNNNNNNTAC 2 cut(s) 357, 389
BauI CACGAG 1 cut(s) 1597
BbsI GAAGAC 2 cut(s) 832, 1314
Bbv12I GWGCWC 1 cut(s) 1138
BbvI GCAGC 7 cut(s) 74, 282, 604, 734, 806, 1317, 1456
BccI CCATC 3 cut(s) 512, 795, 1227
BceAI ACGGC 3 cut(s) 259, 343, 1181
BcgI CGANNNNNNTGC 2 cut(s) 866, 900
BciT130I CCWGG 2 cut(s) 423, 1248
BciVI GTATCC 2 cut(s) 1110, 1578
BcoDI GTCTC 2 cut(s) 54, 918
BfaI CTAG 1 cut(s) 1590
BfmI CTRYAG 2 cut(s) 618, 1664
BfuAI ACCTGC 1 cut(s) 391
BfuI GTATCC 2 cut(s) 1110, 1578
Bme1390I CCNGG 2 cut(s) 423, 1248
Bme18I GGWCC 3 cut(s) 320, 1244, 1411
BmeT110I CYCGRG 2 cut(s) 457, 701
BmgT120I GGNCC 6 cut(s) 231, 320, 966, 1194, 1244, 1411
BmiI GGNNCC 4 cut(s) 233, 322, 448, 600
BmrFI CCNGG 2 cut(s) 423, 1248
BmrI ACTGGG 1 cut(s) 1582
BmsI GCATC 4 cut(s) 457, 697, 1024, 1317
BmuI ACTGGG 1 cut(s) 1582
BpiI GAAGAC 2 cut(s) 832, 1314
BpuEI CTTGAG 1 cut(s) 521
BsaAI YACGTR 1 cut(s) 940
BsaHI GRCGYC 3 cut(s) 216, 308, 1266
BsaJI CCNNGG 3 cut(s) 258, 316, 325
BsaWI WCCGGW 1 cut(s) 1381
BsaXI ACNNNNNCTCC 6 cut(s) 34, 59, 64, 89, 628, 658
Bsc4I CCNNNNNNNGG 3 cut(s) 400, 457, 458
Bse1I ACTGG 4 cut(s) 233, 804, 1054, 1577
Bse3DI GCAATG 2 cut(s) 843, 878
BseBI CCWGG 2 cut(s) 423, 1248
BseDI CCNNGG 3 cut(s) 258, 316, 325
BseGI GGATG 5 cut(s) 472, 523, 712, 1447, 1548
BseLI CCNNNNNNNGG 3 cut(s) 400, 457, 458
BseMI GCAATG 2 cut(s) 843, 878
BseMII CTCAG 3 cut(s) 552, 1574, 1625
BseNI ACTGG 4 cut(s) 233, 804, 1054, 1577
BseXI GCAGC 7 cut(s) 74, 282, 604, 734, 806, 1317, 1456
BsgI GTGCAG 1 cut(s) 975
BshFI GGCC 6 cut(s) 5, 232, 263, 766, 968, 1196
BsiHKAI GWGCWC 1 cut(s) 1138
BsiHKCI CYCGRG 2 cut(s) 457, 701
BsiSI CCGG 1 cut(s) 1382
BslFI GGGAC 2 cut(s) 401, 1076
BslI CCNNNNNNNGG 3 cut(s) 400, 457, 458
BsmAI GTCTC 2 cut(s) 54, 918
BsmFI GGGAC 2 cut(s) 401, 1076
BsnI GGCC 6 cut(s) 5, 232, 263, 766, 968, 1196
BsoBI CYCGRG 2 cut(s) 457, 701
Bsp1286I GDGCHC 2 cut(s) 1138, 1364
Bsp143I GATC 4 cut(s) 265, 337, 446, 598
BspANI GGCC 6 cut(s) 5, 232, 263, 766, 968, 1196
BspCNI CTCAG 3 cut(s) 553, 1573, 1626
BspHI TCATGA 2 cut(s) 1356, 1389
BspLI GGNNCC 4 cut(s) 233, 322, 448, 600
BspMAI CTGCAG 1 cut(s) 622
BspMI ACCTGC 1 cut(s) 391
BspPI GGATC 5 cut(s) 260, 441, 454, 593, 606
BspQI GCTCTTC 3 cut(s) 277, 531, 1126
BsrBI CCGCTC 1 cut(s) 287
BsrDI GCAATG 2 cut(s) 843, 878
BsrI ACTGG 4 cut(s) 233, 804, 1054, 1577
BssECI CCNNGG 3 cut(s) 258, 316, 325
BssMI GATC 4 cut(s) 265, 337, 446, 598
BssNI GRCGYC 3 cut(s) 216, 308, 1266
BssSI CACGAG 1 cut(s) 1597
BssT1I CCWWGG 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 1597
Bst2UI CCWGG 2 cut(s) 423, 1248
Bst4CI ACNGT 2 cut(s) 953, 1225
Bst6I CTCTTC 5 cut(s) 277, 531, 1014, 1126, 1431
BstACI GRCGYC 3 cut(s) 216, 308, 1266
BstAPI GCANNNNNTGC 1 cut(s) 1217
BstBAI YACGTR 1 cut(s) 940
BstC8I GCNNGC 3 cut(s) 275, 289, 293
BstDEI CTNAG 5 cut(s) 561, 612, 1520, 1560, 1634
BstDSI CCRYGG 2 cut(s) 316, 325
BstENI CCTNNNNNAGG 1 cut(s) 398
BstF5I GGATG 5 cut(s) 472, 523, 712, 1447, 1548
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 4 cut(s) 268, 340, 449, 601
BstMAI GTCTC 2 cut(s) 54, 918
BstMBI GATC 4 cut(s) 265, 337, 446, 598
BstMWI GCNNNNNNNGC 4 cut(s) 719, 1217, 1493, 1608
BstNI CCWGG 2 cut(s) 423, 1248
BstNSI RCATGY 2 cut(s) 253, 931
BstSCI CCNGG 2 cut(s) 421, 1246
BstSFI CTRYAG 2 cut(s) 618, 1664
BstSNI TACGTA 1 cut(s) 940
BstV1I GCAGC 7 cut(s) 74, 282, 604, 734, 806, 1317, 1456
BstV2I GAAGAC 2 cut(s) 832, 1314
BstX2I RGATCY 2 cut(s) 446, 598
BstXI CCANNNNNNTGG 1 cut(s) 332
BstYI RGATCY 2 cut(s) 446, 598
BsuI GTATCC 2 cut(s) 1110, 1578
BsuRI GGCC 6 cut(s) 5, 232, 263, 766, 968, 1196
BtgI CCRYGG 2 cut(s) 316, 325
BtsCI GGATG 5 cut(s) 472, 523, 712, 1447, 1548
BtsIMutI CAGTG 4 cut(s) 797, 958, 1048, 1431
BveI ACCTGC 1 cut(s) 391
Cac8I GCNNGC 3 cut(s) 275, 289, 293
CaiI CAGNNNCTG 1 cut(s) 1247
CciI TCATGA 2 cut(s) 1356, 1389
CfoI GCGC 1 cut(s) 279
Cfr13I GGNCC 6 cut(s) 231, 320, 966, 1194, 1244, 1411
CseI GACGC 2 cut(s) 205, 1274
Csp6I GTAC 1 cut(s) 757
CspCI CAANNNNNGTGG 4 cut(s) 1546, 1581, 1585, 1620
CviAII CATG 8 cut(s) 250, 377, 919, 928, 1110, 1357, 1390, 1452
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 5 cut(s) 561, 612, 1520, 1560, 1634
DpnI GATC 4 cut(s) 267, 339, 448, 600
DpnII GATC 4 cut(s) 265, 337, 446, 598
DraI TTTAAA 1 cut(s) 777
Eam1104I CTCTTC 5 cut(s) 277, 531, 1014, 1126, 1431
EarI CTCTTC 5 cut(s) 277, 531, 1014, 1126, 1431
EciI GGCGGA 1 cut(s) 52
Eco105I TACGTA 1 cut(s) 940
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 1364
Eco32I GATATC 2 cut(s) 495, 1447
Eco47I GGWCC 3 cut(s) 320, 1244, 1411
Eco57I CTGAAG 5 cut(s) 143, 1227, 1326, 1436, 1455
Eco88I CYCGRG 2 cut(s) 457, 701
EcoNI CCTNNNNNAGG 1 cut(s) 398
EcoO109I RGGNCCY 2 cut(s) 1244, 1411
EcoRI GAATTC 1 cut(s) 1154
EcoRII CCWGG 2 cut(s) 421, 1246
EcoRV GATATC 2 cut(s) 495, 1447
EcoT14I CCWWGG 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 1364
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 8 cut(s) 253, 380, 922, 931, 1113, 1360, 1393, 1455
FalI AAGNNNNNCTT 4 cut(s) 633, 665, 1503, 1535
FaqI GGGAC 2 cut(s) 401, 1076
FatI CATG 8 cut(s) 249, 376, 918, 927, 1109, 1356, 1389, 1451
FauI CCCGC 2 cut(s) 280, 373
FokI GGATG 5 cut(s) 479, 530, 719, 1454, 1555
FriOI GRGCYC 1 cut(s) 1364
FspBI CTAG 1 cut(s) 1590
GlaI GCGC 1 cut(s) 278
HaeIII GGCC 6 cut(s) 5, 232, 263, 766, 968, 1196
HapII CCGG 1 cut(s) 1382
HgaI GACGC 2 cut(s) 205, 1274
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 3 cut(s) 216, 308, 1266
Hin1II CATG 8 cut(s) 253, 380, 922, 931, 1113, 1360, 1393, 1455
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 3 cut(s) 557, 1404, 1616
HpaII CCGG 1 cut(s) 1382
HphI GGTGA 2 cut(s) 108, 656
Hpy166II GTNNAC 5 cut(s) 320, 528, 571, 647, 1377
Hpy188I TCNGA 6 cut(s) 162, 270, 344, 562, 1207, 1621
Hpy188III TCNNGA 7 cut(s) 464, 500, 1159, 1275, 1357, 1390, 1414
Hpy8I GTNNAC 5 cut(s) 320, 528, 571, 647, 1377
Hpy99I CGWCG 3 cut(s) 221, 310, 313
HpyAV CCTTC 6 cut(s) 167, 635, 898, 1094, 1212, 1231
HpyCH4III ACNGT 2 cut(s) 953, 1225
HpyCH4IV ACGT 2 cut(s) 308, 939
HpyF10VI GCNNNNNNNGC 4 cut(s) 719, 1217, 1493, 1608
HpyF3I CTNAG 5 cut(s) 561, 612, 1520, 1560, 1634
HpySE526I ACGT 2 cut(s) 308, 939
Hsp92I GRCGYC 3 cut(s) 216, 308, 1266
Hsp92II CATG 8 cut(s) 253, 380, 922, 931, 1113, 1360, 1393, 1455
HspAI GCGC 1 cut(s) 277
Kzo9I GATC 4 cut(s) 265, 337, 446, 598
LguI GCTCTTC 3 cut(s) 277, 531, 1126
LmnI GCTCC 5 cut(s) 188, 303, 318, 395, 505
Lsp1109I GCAGC 7 cut(s) 74, 282, 604, 734, 806, 1317, 1456
LweI GCATC 4 cut(s) 457, 697, 1024, 1317
MaeI CTAG 1 cut(s) 1590
MaeII ACGT 2 cut(s) 308, 939
MaeIII GTNAC 1 cut(s) 479
MalI GATC 4 cut(s) 267, 339, 448, 600
MbiI CCGCTC 1 cut(s) 287
MboI GATC 4 cut(s) 265, 337, 446, 598
MfeI CAATTG 2 cut(s) 579, 726
MflI RGATCY 2 cut(s) 446, 598
MhlI GDGCHC 2 cut(s) 1138, 1364
MlyI GAGTC 1 cut(s) 1625
MmeI TCCRAC 3 cut(s) 154, 1207, 1559
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 4 cut(s) 513, 651, 776, 1293
MslI CAYNNNNRTG 3 cut(s) 1355, 1394, 1505
MspI CCGG 1 cut(s) 1382
MspR9I CCNGG 2 cut(s) 423, 1248
MunI CAATTG 2 cut(s) 579, 726
MvaI CCWGG 2 cut(s) 423, 1248
MwoI GCNNNNNNNGC 4 cut(s) 719, 1217, 1493, 1608
NdeII GATC 4 cut(s) 265, 337, 446, 598
NlaIII CATG 8 cut(s) 253, 380, 922, 931, 1113, 1360, 1393, 1455
NlaIV GGNNCC 4 cut(s) 233, 322, 448, 600
NspI RCATGY 2 cut(s) 253, 931
PaeR7I CTCGAG 1 cut(s) 701
PagI TCATGA 2 cut(s) 1356, 1389
PaqCI CACCTGC 1 cut(s) 391
PciI ACATGT 1 cut(s) 249
PciSI GCTCTTC 3 cut(s) 277, 531, 1126
PcsI WCGNNNNNNNCGW 4 cut(s) 219, 243, 333, 1126
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 2 cut(s) 557, 1404
PleI GAGTC 1 cut(s) 1624
PpsI GAGTC 1 cut(s) 1624
Ppu21I YACGTR 1 cut(s) 940
PpuMI RGGWCCY 2 cut(s) 1244, 1411
PscI ACATGT 1 cut(s) 249
PsiI TTATAA 1 cut(s) 833
Psp5II RGGWCCY 2 cut(s) 1244, 1411
Psp6I CCWGG 2 cut(s) 421, 1246
PspGI CCWGG 2 cut(s) 421, 1246
PspN4I GGNNCC 4 cut(s) 233, 322, 448, 600
PspPI GGNCC 6 cut(s) 231, 320, 966, 1194, 1244, 1411
PspPPI RGGWCCY 2 cut(s) 1244, 1411
PspXI VCTCGAGB 1 cut(s) 701
PstI CTGCAG 1 cut(s) 622
PstNI CAGNNNCTG 1 cut(s) 1247
PsuI RGATCY 2 cut(s) 446, 598
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
RseI CAYNNNNRTG 3 cut(s) 1355, 1394, 1505
SapI GCTCTTC 3 cut(s) 277, 531, 1126
SaqAI TTAA 4 cut(s) 513, 651, 776, 1293
Sau3AI GATC 4 cut(s) 265, 337, 446, 598
Sau96I GGNCC 6 cut(s) 231, 320, 966, 1194, 1244, 1411
SchI GAGTC 1 cut(s) 1625
ScrFI CCNGG 2 cut(s) 423, 1248
SduI GDGCHC 2 cut(s) 1138, 1364
SfaNI GCATC 4 cut(s) 457, 697, 1024, 1317
SfcI CTRYAG 2 cut(s) 618, 1664
Sfr274I CTCGAG 1 cut(s) 701
SinI GGWCC 3 cut(s) 320, 1244, 1411
SlaI CTCGAG 1 cut(s) 701
SmiMI CAYNNNNRTG 3 cut(s) 1355, 1394, 1505
SmlI CTYRAG 2 cut(s) 500, 701
SmoI CTYRAG 2 cut(s) 500, 701
SnaBI TACGTA 1 cut(s) 940
SspMI CTAG 1 cut(s) 1590
StyD4I CCNGG 2 cut(s) 421, 1246
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 953, 1225
TaiI ACGT 2 cut(s) 311, 942
TaqI TCGA 4 cut(s) 237, 702, 1407, 1649
TauI GCSGC 5 cut(s) 206, 713, 1023, 1125, 1663
TfiI GAWTC 2 cut(s) 557, 1404
Tru1I TTAA 4 cut(s) 513, 651, 776, 1293
Tru9I TTAA 4 cut(s) 513, 651, 776, 1293
TscAI CASTG 4 cut(s) 804, 958, 1048, 1438
TseI GCWGC 7 cut(s) 87, 295, 617, 722, 794, 1330, 1469
TspDTI ATGAA 7 cut(s) 191, 365, 832, 917, 1098, 1167, 1559
TspGWI ACGGA 3 cut(s) 175, 305, 662
TspRI CASTG 4 cut(s) 804, 958, 1048, 1438
VpaK11BI GGWCC 3 cut(s) 320, 1244, 1411
XagI CCTNNNNNAGG 1 cut(s) 398
XapI RAATTY 3 cut(s) 807, 1154, 1531
XceI RCATGY 2 cut(s) 253, 931
XhoI CTCGAG 1 cut(s) 701
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 1 cut(s) 1590
ZraI GACGTC 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.