Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037950.1

Orthogroup ID

OG0008581

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1466

Gene Structure 1466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037950.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ggtgtcatcactgaggacgtaattcagctcaggaagtccattggggcacctggaatggccgtactccaatttggttttggaagtgatgctgctaatcctcatttacctcataatcatgagcgcaatcaagttgtttacactggaactcatgataatgacacgattcgaggttggtgggatgttttaccccaagaagagaagtccaatgttctgaaatatctttcaattaatgaagaagaaggtatctcatgggcaatgataaaggttgcgttatcttctgtcgcccaaacagcaatcatgcctatgcaagatattcttaggttaggaagttctgccaggatgaatattcctgcaacacagtttggaaattggggttggaggatgcctagttctgtgagttttgatagcttggagacagaagctttgcaactgaaggagatattgtcgatgtacgggcgcatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000025 GO:0000272 GO:0003674 GO:0003824 GO:0004133 GO:0004134 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0005984 GO:0005996 GO:0006006 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009501 GO:0009507 GO:0009536 GO:0009987 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0055114 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_77

Protein Analysis

154

Amino Acids

17.17

Weight (kDa)

5.29

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64860
fragaria_vesca	FvH4_1g22230 FvH4_1g22230 FvH4_1g22230
malus_domestica	MD15G1333300.v1.1
prunus_persica	Prupe.6G173200_v2.0.a1 Prupe.6G173200_v2.0.a1 Prupe.6G173200_v2.0.a1 Prupe.6G173200_v2.0.a1 Prupe.6G173200_v2.0.a1
pyrus_communis	pycom15g29230
rosa_chinensis	RchiOBHm_Chr2g0116371
rosa_laevigata	RLG00000018263
rosa_multiflora	Rmu_sc0004191.1_g000073 Rmu_sc0037950.1_g000001 Rmu_ssc0000108.1_g000003
rosa_roxburghii	Rroxscaffold_2G00127280
rosa_rugosa	Rorug02G0206000
rosa_samantha	Rh2AG261500 Rh2BG272900 Rh2CG267900 Rh2DG269700
rosa_wichuraiana	Rw2G020520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AcoI	YGGCCR	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	452
AfaI	GTAC	2 cut(s)	63, 452
AgsI	TTSAA	1 cut(s)	225
AjnI	CCWGG	2 cut(s)	49, 335
AjuI	GAANNNNNNNTTGG	2 cut(s)	358, 390
AloI	GAACNNNNNNTCC	2 cut(s)	373, 405
AluBI	AGCT	3 cut(s)	28, 408, 422
AluI	AGCT	3 cut(s)	28, 408, 422
Alw26I	GTCTC	1 cut(s)	407
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	89
ArsI	GACNNNNNNTTYG	2 cut(s)	406, 438
AseI	ATTAAT	1 cut(s)	228
AspLEI	GCGC	2 cut(s)	123, 459
BaeGI	GKGCMC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	51, 337
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	1 cut(s)	387
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	2 cut(s)	51, 337
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	51, 337
BmsI	GCATC	2 cut(s)	76, 372
Bpu10I	CCTNAGC	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	428, 458
Bse1I	ACTGG	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	51, 337
BseGI	GGATG	3 cut(s)	184, 345, 387
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	407
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	4, 42
BspHI	TCATGA	2 cut(s)	115, 148
BspLI	GGNNCC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	145
Bst2UI	CCWGG	2 cut(s)	51, 337
Bst4CI	ACNGT	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	189
BstDEI	CTNAG	3 cut(s)	12, 29, 317
BstF5I	GGATG	3 cut(s)	184, 345, 387
BstHHI	GCGC	2 cut(s)	123, 459
BstMAI	GTCTC	1 cut(s)	407
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	2 cut(s)	51, 337
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	2 cut(s)	49, 335
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	3 cut(s)	184, 345, 387
BtsIMutI	CAGTG	2 cut(s)	9, 138
CciI	TCATGA	2 cut(s)	115, 148
CfoI	GCGC	2 cut(s)	123, 459
Csp6I	GTAC	2 cut(s)	62, 451
CviAII	CATG	5 cut(s)	116, 149, 249, 298, 460
CviJI	RGCY	4 cut(s)	28, 59, 408, 422
CviKI_1	RGCY	4 cut(s)	28, 59, 408, 422
CviQI	GTAC	2 cut(s)	62, 451
DdeI	CTNAG	3 cut(s)	12, 29, 317
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	49, 335
FaeI	CATG	5 cut(s)	119, 152, 252, 301, 463
FaiI	YATR	7 cut(s)	111, 117, 150, 250, 299, 305, 461
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	5 cut(s)	115, 148, 248, 297, 459
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	3 cut(s)	191, 352, 394
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	1 cut(s)	387
GlaI	GCGC	2 cut(s)	122, 458
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	123, 459
Hin1II	CATG	5 cut(s)	119, 152, 252, 301, 463
Hin6I	GCGC	2 cut(s)	121, 457
HinP1I	GCGC	2 cut(s)	121, 457
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	3 cut(s)	31, 116, 149
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	233, 427
HpyCH4III	ACNGT	1 cut(s)	360
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	307, 353, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	3 cut(s)	12, 29, 317
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	5 cut(s)	119, 152, 252, 301, 463
HspAI	GCGC	2 cut(s)	121, 457
LpnPI	CCDG	7 cut(s)	16, 36, 63, 126, 322, 349, 363
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	76, 372
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	18
MboII	GAAGA	4 cut(s)	206, 245, 248, 267
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	4 cut(s)	21, 68, 225, 367
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	5 cut(s)	7, 108, 117, 161, 372
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	3 cut(s)	114, 153, 302
MspR9I	CCNGG	2 cut(s)	51, 337
MvaI	CCWGG	2 cut(s)	51, 337
MwoI	GCNNNNNNNGC	1 cut(s)	290
NlaIII	CATG	5 cut(s)	119, 152, 252, 301, 463
NlaIV	GGNNCC	1 cut(s)	48
NspI	RCATGY	1 cut(s)	463
PagI	TCATGA	2 cut(s)	115, 148
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	91
PshBI	ATTAAT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	49, 335
PspGI	CCWGG	2 cut(s)	49, 335
PspN4I	GGNNCC	1 cut(s)	48
RsaI	GTAC	2 cut(s)	63, 452
RsaNI	GTAC	2 cut(s)	62, 451
RseI	CAYNNNNRTG	3 cut(s)	114, 153, 302
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	90
ScrFI	CCNGG	2 cut(s)	51, 337
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	2 cut(s)	76, 372
SmiMI	CAYNNNNRTG	3 cut(s)	114, 153, 302
Sse9I	AATT	4 cut(s)	21, 68, 225, 367
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	2 cut(s)	49, 335
TaaI	ACNGT	1 cut(s)	360
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	166, 446
TasI	AATT	4 cut(s)	21, 68, 225, 367
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	16, 145
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	2 cut(s)	246, 356
TspRI	CASTG	2 cut(s)	16, 145
VspI	ATTAAT	1 cut(s)	228
XceI	RCATGY	1 cut(s)	463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	74
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.