Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004191.1

Orthogroup ID

OG0008581

Physical Location & Seq

Genomic Coordinates Reverse (-)

302280 .. 304913

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004191.1_g000073.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

atggccgctgctacttctctctcactcctcccctccactctctctcccaagctctcctccaactcctcgatcctcttctcctccgctcaattccctcccagtaggaccacaatcccactcttccgaatgaaacacgccgccgttttgacctcctccgcttacgccgtcggcgaggacttgcctctcgactacggcgaggtcttcccccagccggatccgaccgaccgcagaagagccggcgtcgtcctccatccgacgtcgtttaagggaccttacggcattggcgatctcggagaggaggcctttcgcttcatcgactggcttcacgacgccggcttctcgctctggcaggtcctcccgctcgttcctccgggccggaaggccaatgaggaaggatcaccatactccggacaggatgcgaattgcggaaacactttgttgatatctcttgatgagcttgtgaaggatggattgttgacaaaggaagagcttccgaatccagttgatgcggagcgtgtgaattacgcagccgtagctgacatgaaagatcctttgataactaaggctgcagagaggcttattatgagtgaaggtgatcttaaaaggcagcttgaagatttccgcagacaccctgatatatcatgctggcttgaagatgcagctttttttgctgcaattgacagcagcttagatgcttttagctggtacgagtggcctgaacccttgaaagatcgtcatcttgcagccttagaagacatttatcagagcaaagagcattttataaatgtattcatcgccgaacaatttttgttccaaaggcagtggcagagagttcgcaagtatgcacagttaaaggggatcagtatcatgggagacatgcccatttatgtaggatatcatagtgcagatgtttgggccaataggaaacattttttgctgaacagaaaaggttatcctcttctagttagtggtgttccccctgatgccttcagtgaaactggtcagctatggggcagccccctatatgattggaaagcgatggagaaagatggattttcatggtggatacgccgcatacgaagagcacaaaacatatatgatgaattcagaatagaccacttcagagggcttgccggcttctgggctgttccttctgaagcaaaagttgcaatggttggaaaatggaaggtcaggtttcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000025 GO:0000272 GO:0003674 GO:0003824 GO:0004133 GO:0004134 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0005984 GO:0005996 GO:0006006 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009501 GO:0009507 GO:0009536 GO:0009987 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019318 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0055114 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_77

Protein Analysis

400

Amino Acids

45.39

Weight (kDa)

5.9

Isoelectric Point (pI)

43.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64860
fragaria_vesca	FvH4_1g22230 FvH4_1g22230 FvH4_1g22230
malus_domestica	MD15G1333300.v1.1
prunus_persica	Prupe.6G173200_v2.0.a1 Prupe.6G173200_v2.0.a1 Prupe.6G173200_v2.0.a1 Prupe.6G173200_v2.0.a1 Prupe.6G173200_v2.0.a1
pyrus_communis	pycom15g29230
rosa_chinensis	RchiOBHm_Chr2g0116371
rosa_laevigata	RLG00000018263
rosa_multiflora	Rmu_sc0004191.1_g000073 Rmu_sc0037950.1_g000001 Rmu_ssc0000108.1_g000003
rosa_roxburghii	Rroxscaffold_2G00127280
rosa_rugosa	Rorug02G0206000
rosa_samantha	Rh2AG261500 Rh2BG272900 Rh2CG267900 Rh2DG269700
rosa_wichuraiana	Rw2G020520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	782
AatII	GACGTC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	340
AccBSI	CCGCTC	2 cut(s)	86, 361
AccIII	TCCGGA	1 cut(s)	407
AclWI	GGATC	6 cut(s)	64, 209, 222, 403, 542, 866
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	1103
AcuI	CTGAAG	3 cut(s)	973, 1105, 1176
AcyI	GRCGYC	3 cut(s)	240, 257, 330
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	3 cut(s)	211, 407, 1140
AgsI	TTSAA	4 cut(s)	614, 653, 727, 1199
AluBI	AGCT	9 cut(s)	52, 457, 490, 536, 610, 662, 687, 702, 1006
AluI	AGCT	9 cut(s)	52, 457, 490, 536, 610, 662, 687, 702, 1006
Alw21I	GWGCWC	1 cut(s)	1087
Alw26I	GTCTC	1 cut(s)	867
AlwI	GGATC	6 cut(s)	64, 209, 222, 403, 542, 866
Aor13HI	TCCGGA	1 cut(s)	407
AoxI	GGCC	6 cut(s)	3, 300, 373, 381, 713, 915
ApeKI	GCWGC	9 cut(s)	8, 527, 566, 607, 659, 671, 684, 743, 1014
ApoI	RAATTY	1 cut(s)	1103
Asp700I	GAANNNNTTC	1 cut(s)	489
AspS9I	GGNCC	5 cut(s)	105, 269, 352, 373, 915
AsuC2I	CCSGG	1 cut(s)	372
AsuHPI	GGTGA	2 cut(s)	390, 605
AvaII	GGWCC	3 cut(s)	105, 269, 352
BamHI	GGATCC	1 cut(s)	214
BbsI	GAAGAC	2 cut(s)	193, 759
Bbv12I	GWGCWC	1 cut(s)	1087
BbvI	GCAGC	8 cut(s)	539, 553, 619, 658, 671, 696, 755, 1026
BccI	CCATC	4 cut(s)	258, 461, 1033, 1043
BceAI	ACGGC	5 cut(s)	125, 149, 208, 292, 515
BcgI	CGANNNNNNTGC	2 cut(s)	815, 849
BciVI	GTATCC	1 cut(s)	1059
BcnI	CCSGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	867
BfaI	CTAG	1 cut(s)	962
BfmI	CTRYAG	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	340
BfuI	GTATCC	1 cut(s)	1059
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	3 cut(s)	105, 269, 352
BmgT120I	GGNCC	5 cut(s)	105, 269, 352, 373, 915
BmiI	GGNNCC	2 cut(s)	216, 270
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	5 cut(s)	406, 496, 646, 682, 973
BmuI	ACTGGG	1 cut(s)	93
BpiI	GAAGAC	2 cut(s)	193, 759
BpuMI	CCSGG	1 cut(s)	372
BsaBI	GATNNNNATC	2 cut(s)	735, 863
BsaHI	GRCGYC	3 cut(s)	240, 257, 330
BsaWI	WCCGGW	1 cut(s)	407
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 407, 1140
Bse118I	RCCGGY	3 cut(s)	236, 332, 1133
Bse1I	ACTGG	4 cut(s)	99, 323, 500, 1003
Bse3DI	GCAATG	1 cut(s)	1176
Bse8I	GATNNNNATC	2 cut(s)	735, 863
BseAI	TCCGGA	1 cut(s)	407
BseGI	GGATG	3 cut(s)	250, 421, 472
BseJI	GATNNNNATC	2 cut(s)	735, 863
BseLI	CCNNNNNNNGG	3 cut(s)	211, 407, 1140
BseMI	GCAATG	1 cut(s)	1176
BseNI	ACTGG	4 cut(s)	99, 323, 500, 1003
BseRI	GAGGAG	6 cut(s)	17, 46, 55, 70, 142, 311
BseXI	GCAGC	8 cut(s)	539, 553, 619, 658, 671, 696, 755, 1026
BseYI	CCCAGC	1 cut(s)	207
BsgI	GTGCAG	1 cut(s)	924
Bsh1285I	CGRYCG	2 cut(s)	222, 226
BshFI	GGCC	6 cut(s)	5, 302, 375, 383, 715, 917
BsiEI	CGRYCG	2 cut(s)	222, 226
BsiHKAI	GWGCWC	1 cut(s)	1087
BsiSI	CCGG	7 cut(s)	212, 237, 333, 371, 376, 408, 1134
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	3 cut(s)	211, 407, 1140
BsmAI	GTCTC	1 cut(s)	867
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	6 cut(s)	5, 302, 375, 383, 715, 917
Bsp1286I	GDGCHC	1 cut(s)	1087
Bsp13I	TCCGGA	1 cut(s)	407
Bsp143I	GATC	8 cut(s)	69, 214, 286, 395, 547, 595, 730, 858
BspANI	GGCC	6 cut(s)	5, 302, 375, 383, 715, 917
BspEI	TCCGGA	1 cut(s)	407
BspLI	GGNNCC	2 cut(s)	216, 270
BspMAI	CTGCAG	1 cut(s)	571
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	6 cut(s)	64, 209, 222, 403, 542, 866
BspQI	GCTCTTC	3 cut(s)	226, 480, 1075
BsrBI	CCGCTC	2 cut(s)	86, 361
BsrDI	GCAATG	1 cut(s)	1176
BsrFI	RCCGGY	3 cut(s)	236, 332, 1133
BsrI	ACTGG	4 cut(s)	99, 323, 500, 1003
BssAI	RCCGGY	3 cut(s)	236, 332, 1133
BssMI	GATC	8 cut(s)	69, 214, 286, 395, 547, 595, 730, 858
BssNI	GRCGYC	3 cut(s)	240, 257, 330
Bst4CI	ACNGT	1 cut(s)	849
Bst6I	CTCTTC	6 cut(s)	80, 125, 226, 480, 963, 1075
BstACI	GRCGYC	3 cut(s)	240, 257, 330
BstAPI	GCANNNNNTGC	1 cut(s)	1166
BstC8I	GCNNGC	5 cut(s)	238, 334, 647, 1131, 1135
BstDEI	CTNAG	3 cut(s)	561, 688, 748
BstF5I	GGATG	3 cut(s)	250, 421, 472
BstKTI	GATC	8 cut(s)	72, 217, 289, 398, 550, 598, 733, 861
BstMAI	GTCTC	1 cut(s)	867
BstMBI	GATC	8 cut(s)	69, 214, 286, 395, 547, 595, 730, 858
BstMCI	CGRYCG	2 cut(s)	222, 226
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 668, 1166
BstNSI	RCATGY	1 cut(s)	880
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	8 cut(s)	539, 553, 619, 658, 671, 696, 755, 1026
BstV2I	GAAGAC	2 cut(s)	193, 759
BstX2I	RGATCY	2 cut(s)	214, 547
BstYI	RGATCY	2 cut(s)	214, 547
BsuI	GTATCC	1 cut(s)	1059
BsuRI	GGCC	6 cut(s)	5, 302, 375, 383, 715, 917
BtgZI	GCGATG	2 cut(s)	778, 1052
BtsCI	GGATG	3 cut(s)	250, 421, 472
BtsI	GCAGTG	1 cut(s)	827
BtsIMutI	CAGTG	2 cut(s)	827, 997
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	5 cut(s)	238, 334, 647, 1131, 1135
Cfr10I	RCCGGY	3 cut(s)	236, 332, 1133
Cfr13I	GGNCC	5 cut(s)	105, 269, 352, 373, 915
CseI	GACGC	2 cut(s)	229, 338
Csp6I	GTAC	1 cut(s)	706
CspCI	CAANNNNNGTGG	2 cut(s)	803, 838
CviAII	CATG	5 cut(s)	541, 642, 868, 877, 1059
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	3 cut(s)	561, 688, 748
DpnI	GATC	8 cut(s)	71, 216, 288, 397, 549, 597, 732, 860
DpnII	GATC	8 cut(s)	69, 214, 286, 395, 547, 595, 730, 858
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	6 cut(s)	80, 125, 226, 480, 963, 1075
EarI	CTCTTC	6 cut(s)	80, 125, 226, 480, 963, 1075
Eco147I	AGGCCT	1 cut(s)	302
Eco32I	GATATC	2 cut(s)	444, 896
Eco47I	GGWCC	3 cut(s)	105, 269, 352
Eco57I	CTGAAG	3 cut(s)	973, 1105, 1176
EcoO109I	RGGNCCY	2 cut(s)	269, 352
EcoRI	GAATTC	1 cut(s)	1103
EcoRV	GATATC	2 cut(s)	444, 896
FaeI	CATG	5 cut(s)	544, 645, 871, 880, 1062
FalI	AAGNNNNNCTT	2 cut(s)	582, 614
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	5 cut(s)	540, 641, 867, 876, 1058
FauI	CCCGC	1 cut(s)	366
FokI	GGATG	3 cut(s)	237, 428, 479
FspBI	CTAG	1 cut(s)	962
GsaI	CCCAGC	1 cut(s)	211
HaeIII	GGCC	6 cut(s)	5, 302, 375, 383, 715, 917
HapII	CCGG	7 cut(s)	212, 237, 333, 371, 376, 408, 1134
HgaI	GACGC	2 cut(s)	229, 338
Hin1I	GRCGYC	3 cut(s)	240, 257, 330
Hin1II	CATG	5 cut(s)	544, 645, 871, 880, 1062
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	1 cut(s)	496
HpaII	CCGG	7 cut(s)	212, 237, 333, 371, 376, 408, 1134
HphI	GGTGA	2 cut(s)	390, 605
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	9 cut(s)	125, 219, 255, 293, 495, 765, 1109, 1124, 1156
Hpy188III	TCNNGA	4 cut(s)	185, 326, 408, 449
Hpy8I	GTNNAC	1 cut(s)	477
Hpy99I	CGWCG	5 cut(s)	170, 245, 259, 262, 332
HpyAV	CCTTC	7 cut(s)	373, 386, 457, 584, 997, 1161, 1180
HpyCH4III	ACNGT	1 cut(s)	849
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	7 cut(s)	569, 659, 674, 743, 845, 905, 1169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 668, 1166
HpyF3I	CTNAG	3 cut(s)	561, 688, 748
HpySE526I	ACGT	1 cut(s)	257
Hsp92I	GRCGYC	3 cut(s)	240, 257, 330
Hsp92II	CATG	5 cut(s)	544, 645, 871, 880, 1062
Kpn2I	TCCGGA	1 cut(s)	407
KroI	GCCGGC	3 cut(s)	236, 332, 1133
KroNI	GCCGGC	3 cut(s)	238, 334, 1135
Kzo9I	GATC	8 cut(s)	69, 214, 286, 395, 547, 595, 730, 858
LguI	GCTCTTC	3 cut(s)	226, 480, 1075
LmnI	GCTCC	1 cut(s)	511
Lsp1109I	GCAGC	8 cut(s)	539, 553, 619, 658, 671, 696, 755, 1026
LweI	GCATC	5 cut(s)	406, 496, 646, 682, 973
MaeI	CTAG	1 cut(s)	962
MaeII	ACGT	1 cut(s)	257
MalI	GATC	8 cut(s)	71, 216, 288, 397, 549, 597, 732, 860
MbiI	CCGCTC	2 cut(s)	86, 361
MboI	GATC	8 cut(s)	69, 214, 286, 395, 547, 595, 730, 858
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	2 cut(s)	214, 547
MhlI	GDGCHC	1 cut(s)	1087
MluCI	AATT	6 cut(s)	89, 421, 520, 675, 803, 1103
MmeI	TCCRAC	4 cut(s)	84, 242, 278, 1156
MroI	TCCGGA	1 cut(s)	407
MroNI	GCCGGC	3 cut(s)	236, 332, 1133
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	3 cut(s)	264, 600, 851
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	7 cut(s)	212, 237, 333, 371, 376, 408, 1134
MspR9I	CCNGG	1 cut(s)	372
MunI	CAATTG	1 cut(s)	675
MwoI	GCNNNNNNNGC	3 cut(s)	533, 668, 1166
NaeI	GCCGGC	3 cut(s)	238, 334, 1135
NciI	CCSGG	1 cut(s)	372
NdeII	GATC	8 cut(s)	69, 214, 286, 395, 547, 595, 730, 858
NgoMIV	GCCGGC	3 cut(s)	236, 332, 1133
NlaIII	CATG	5 cut(s)	544, 645, 871, 880, 1062
NlaIV	GGNNCC	2 cut(s)	216, 270
NspI	RCATGY	1 cut(s)	880
PceI	AGGCCT	1 cut(s)	302
PciSI	GCTCTTC	3 cut(s)	226, 480, 1075
PcsI	WCGNNNNNNNCGW	4 cut(s)	168, 192, 282, 1075
PdiI	GCCGGC	3 cut(s)	238, 334, 1135
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	496
PpuMI	RGGWCCY	2 cut(s)	269, 352
PsiI	TTATAA	1 cut(s)	782
Psp5II	RGGWCCY	2 cut(s)	269, 352
PspFI	CCCAGC	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	216, 270
PspPI	GGNCC	5 cut(s)	105, 269, 352, 373, 915
PspPPI	RGGWCCY	2 cut(s)	269, 352
PstI	CTGCAG	1 cut(s)	571
PsuI	RGATCY	2 cut(s)	214, 547
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
SapI	GCTCTTC	3 cut(s)	226, 480, 1075
SaqAI	TTAA	3 cut(s)	264, 600, 851
Sau3AI	GATC	8 cut(s)	69, 214, 286, 395, 547, 595, 730, 858
Sau96I	GGNCC	5 cut(s)	105, 269, 352, 373, 915
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	1 cut(s)	1087
SfaNI	GCATC	5 cut(s)	406, 496, 646, 682, 973
SfcI	CTRYAG	1 cut(s)	567
SinI	GGWCC	3 cut(s)	105, 269, 352
Sse9I	AATT	6 cut(s)	89, 421, 520, 675, 803, 1103
SseBI	AGGCCT	1 cut(s)	302
SspMI	CTAG	1 cut(s)	962
StuI	AGGCCT	1 cut(s)	302
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	849
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	3 cut(s)	68, 186, 315
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	6 cut(s)	89, 421, 520, 675, 803, 1103
TauI	GCSGC	3 cut(s)	8, 140, 1074
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	3 cut(s)	264, 600, 851
Tru9I	TTAA	3 cut(s)	264, 600, 851
TscAI	CASTG	2 cut(s)	827, 997
TseI	GCWGC	9 cut(s)	8, 527, 566, 607, 659, 671, 684, 743, 1014
TspDTI	ATGAA	6 cut(s)	143, 301, 557, 781, 1047, 1116
TspRI	CASTG	2 cut(s)	827, 997
VpaK11BI	GGWCC	3 cut(s)	105, 269, 352
XapI	RAATTY	1 cut(s)	1103
XceI	RCATGY	1 cut(s)	880
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	1 cut(s)	962
ZraI	GACGTC	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.