Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012567

Physical Location & Seq

Genomic Coordinates Forward (+)

14948138 .. 14949544

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g23080.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAGCAAGAATCACAGAAGAGGAAGCTTGATGAGACTGGCATTGAGCCCTCGAATGCTCCCATTCTTTGTGTGAATAATTGTGGGTATTATGGAAGTGCCAAAACTAATGATCTCTGCTCCAAATGCTACAAGGAGTTTTTACTAACGCAATCGAAAGGTGCGGTGGAGGGTACCGTGATTGTGGAGAATAAGGTTGGTGAGGGTGGGGCAAATGTGGTGAATAAGTCCCATGTTGAACAAGTAGTTGAAGAAGTTAGACAGAGTCAAGTTGAAGAAGGGACGACTTCGGAGAACCCCGAGAAGCGCCCCGCAAATAGGTGCAGCTTTTGTAGAAAGCGGGTTGGCCTAACGGGGTTCAAGTGCAGATGTGGTGATACATTTTGTTCCCTGCATCGGTACTCCAACTCTCATAACTGCATGTTTGATTACAAGAGTGCAGGCCAGGATGCAATTGCAAAGGCAAACCCTGTCATCAAGGCTGATAAAATTGATAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

168

Amino Acids

18.43

Weight (kDa)

8.0

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	22 - 45	2.4e-11	A20-like zinc finger
zf-AN1	PF01428	108 - 145	4e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23080 FvH4_1g23080 FvH4_1g23080
prunus_persica	Prupe.6G168300_v2.0.a1 Prupe.6G168300_v2.0.a1 Prupe.6G168300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0117771
rosa_laevigata	RLG00000018369
rosa_multiflora	Rmu_co8494483.1_g000001 Rmu_sc0001617.1_g000043
rosa_roxburghii	Rroxscaffold_2G00126240
rosa_rugosa	Rorug02G0213900 Rorug02G0214000
rosa_samantha	Rh2AG270000 Rh2BG281400 Rh2CG270100 Rh2DG277700 Rh2DG295700
rosa_wichuraiana	Rw2G021320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	173
AciI	CCGC	3 cut(s)	164, 312, 340
AfaI	GTAC	2 cut(s)	175, 401
AfiI	CCNNNNNNNGG	2 cut(s)	318, 396
AgsI	TTSAA	4 cut(s)	239, 251, 275, 361
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	2 cut(s)	28, 327
AluI	AGCT	2 cut(s)	28, 327
Alw26I	GTCTC	1 cut(s)	29
Ama87I	CYCGRG	1 cut(s)	299
AoxI	GGCC	2 cut(s)	346, 442
ApeKI	GCWGC	1 cut(s)	324
Asp718I	GGTACC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	309
AsuHPI	GGTGA	3 cut(s)	212, 232, 386
AvaI	CYCGRG	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	336
BciT130I	CCWGG	1 cut(s)	446
BcoDI	GTCTC	1 cut(s)	29
BfoI	RGCGCY	1 cut(s)	310
BisI	GCNGC	1 cut(s)	325
BlsI	GCNGC	1 cut(s)	326
Bme1390I	CCNGG	1 cut(s)	446
BmeT110I	CYCGRG	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	2 cut(s)	403, 439
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 396
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	2 cut(s)	318, 396
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	336
BsgI	GTGCAG	3 cut(s)	343, 385, 459
BshFI	GGCC	2 cut(s)	348, 444
BshNI	GGYRCC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	299
BslFI	GGGAC	2 cut(s)	214, 295
BslI	CCNNNNNNNGG	2 cut(s)	318, 396
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	2 cut(s)	214, 295
BsmI	GAATGC	1 cut(s)	61
BsnI	GGCC	2 cut(s)	348, 444
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	3 cut(s)	164, 312, 340
BspANI	GGCC	2 cut(s)	348, 444
BspLI	GGNNCC	1 cut(s)	175
BspT107I	GGYRCC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	43
BssMI	GATC	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	442
BstF5I	GGATG	1 cut(s)	454
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	446
BstNSI	RCATGY	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	444
BstV1I	GCAGC	1 cut(s)	336
BsuRI	GGCC	2 cut(s)	348, 444
BtsCI	GGATG	1 cut(s)	454
Cac8I	GCNNGC	1 cut(s)	442
CfoI	GCGC	1 cut(s)	309
Csp6I	GTAC	2 cut(s)	174, 400
CviAII	CATG	2 cut(s)	233, 421
CviJI	RGCY	6 cut(s)	28, 49, 327, 348, 444, 482
CviKI_1	RGCY	6 cut(s)	28, 49, 327, 348, 444, 482
CviQI	GTAC	2 cut(s)	174, 400
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	51
FaeI	CATG	2 cut(s)	236, 424
FaiI	YATR	5 cut(s)	93, 234, 414, 422, 502
FaqI	GGGAC	2 cut(s)	214, 295
FatI	CATG	2 cut(s)	232, 420
FauI	CCCGC	2 cut(s)	319, 333
Fnu4HI	GCNGC	1 cut(s)	325
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	325
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	1 cut(s)	325
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	2 cut(s)	348, 444
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	236, 424
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	2 cut(s)	11, 265
HphI	GGTGA	3 cut(s)	212, 232, 386
Hpy188I	TCNGA	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	7 cut(s)	324, 366, 394, 420, 440, 452, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	236, 424
HspAI	GCGC	1 cut(s)	307
KpnI	GGTACC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	112
LmnI	GCTCC	3 cut(s)	4, 64, 125
LpnPI	CCDG	6 cut(s)	24, 404, 426, 431, 458, 483
Lsp1109I	GCAGC	1 cut(s)	336
LweI	GCATC	2 cut(s)	403, 439
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	3 cut(s)	31, 263, 287
MfeI	CAATTG	1 cut(s)	453
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	3 cut(s)	79, 453, 489
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	4 cut(s)	15, 61, 163, 196
MspR9I	CCNGG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	61
MvaI	CCWGG	1 cut(s)	446
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	236, 424
NlaIV	GGNNCC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	424
PctI	GAATGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	11
PflFI	GACNNNGTC	1 cut(s)	264
PkrI	GCNGC	1 cut(s)	326
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	264
RsaI	GTAC	2 cut(s)	175, 401
RsaNI	GTAC	2 cut(s)	174, 400
SatI	GCNGC	1 cut(s)	325
Sau3AI	GATC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	5 cut(s)	30, 163, 198, 323, 329
SfaNI	GCATC	2 cut(s)	403, 439
Sse9I	AATT	3 cut(s)	79, 453, 489
SsiI	CCGC	3 cut(s)	164, 312, 340
StyD4I	CCNGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	2 cut(s)	53, 155
TasI	AATT	3 cut(s)	79, 453, 489
TfiI	GAWTC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	324
Tth111I	GACNNNGTC	1 cut(s)	264
XceI	RCATGY	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.