Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012567

Physical Location & Seq

Genomic Coordinates Forward (+)

17250911 .. 17253777

Gene Structure 2867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G168300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAGCAAGAATCACAGAAGAGGAAGCTTGATGAGACTGGCAATGAGGCCTCCAAGGCTCCGATTATGTGTGTGAATAATTGCGGGTTTTTCGGAAGTGAAAAGACTAATAATCTTTGCTCCAAGTGCTACAAAGATTTTCTATTAAAACAATCAAAAACAGCAGCAGATGATACTGCGGTTGTGGGTAAAAAAGTTAGTGCTGGTGATCAAGATTTGGAGAATAAACGCCATGTTCAACAAGTACTAGAGGAAGTAAAACAGAGTCAAGTTGAAGAAGGAACCACTTCCGAGAACCCTGAGAAGCGACCTGCAAATAGGTGCAACTTTTGTAGGAAGCGGGTTGGCCTTACCGGTTTTAAGTGTAGGTGTGGGCAGACATTTTGCTCACTGCATCGTTACTCCAACAAGCACAACTGCGTGTTCGATTATAAGAGTGCAGGCCAAGAGGCAATTGCAAAAGCGAACCCTGTCGTTAAGGCAGAGAAAGTTGATAAGATACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-A20 zf-AN1

Protein Analysis

169

Amino Acids

18.83

Weight (kDa)

8.98

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012567)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23080 FvH4_1g23080 FvH4_1g23080
prunus_persica	Prupe.6G168300_v2.0.a1 Prupe.6G168300_v2.0.a1 Prupe.6G168300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0117771
rosa_laevigata	RLG00000018369
rosa_multiflora	Rmu_co8494483.1_g000001 Rmu_sc0001617.1_g000043
rosa_roxburghii	Rroxscaffold_2G00126240
rosa_rugosa	Rorug02G0213900 Rorug02G0214000
rosa_samantha	Rh2AG270000 Rh2BG281400 Rh2CG270100 Rh2DG277700 Rh2DG295700
rosa_wichuraiana	Rw2G021320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
Acc36I	ACCTGC	1 cut(s)	319
AciI	CCGC	3 cut(s)	84, 179, 340
AfaI	GTAC	1 cut(s)	246
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	239, 275
AluBI	AGCT	1 cut(s)	28
AluI	AGCT	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	3 cut(s)	48, 346, 442
ApeKI	GCWGC	1 cut(s)	164
AsiGI	ACCGGT	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	286
AsuHPI	GGTGA	1 cut(s)	218
BaeI	ACNNNNGTAYC	2 cut(s)	165, 198
BbvI	GCAGC	1 cut(s)	176
BclI	TGATCA	1 cut(s)	208
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	319
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmcAI	AGTACT	1 cut(s)	246
BmiI	GGNNCC	2 cut(s)	60, 283
BmsI	GCATC	1 cut(s)	403
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	353
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	49
BseDI	CCNNGG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	1 cut(s)	176
BsgI	GTGCAG	1 cut(s)	459
BshFI	GGCC	3 cut(s)	50, 348, 444
BshTI	ACCGGT	1 cut(s)	353
BsiSI	CCGG	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	29
BsnI	GGCC	3 cut(s)	50, 348, 444
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	3 cut(s)	84, 179, 340
BspANI	GGCC	3 cut(s)	50, 348, 444
BspCNI	CTCAG	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	60, 283
BspMI	ACCTGC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	54
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	1 cut(s)	300
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 126
BstV1I	GCAGC	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	50, 348, 444
BtsI	GCAGTG	1 cut(s)	389
BtsIMutI	CAGTG	1 cut(s)	389
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	245
CspAI	ACCGGT	1 cut(s)	353
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	5 cut(s)	28, 50, 59, 348, 444
CviKI_1	RGCY	5 cut(s)	28, 50, 59, 348, 444
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	54
Eco147I	AGGCCT	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	1 cut(s)	236
FaiI	YATR	3 cut(s)	68, 234, 432
FatI	CATG	1 cut(s)	232
FauI	CCCGC	2 cut(s)	77, 333
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	50, 348, 444
HapII	CCGG	1 cut(s)	354
Hin1II	CATG	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	2 cut(s)	11, 265
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	1 cut(s)	218
Hpy188I	TCNGA	3 cut(s)	63, 95, 292
Hpy188III	TCNNGA	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	5 cut(s)	314, 324, 394, 440, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 126
HpyF3I	CTNAG	1 cut(s)	300
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	3 cut(s)	4, 64, 125
LpnPI	CCDG	7 cut(s)	24, 189, 312, 324, 367, 426, 483
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	1 cut(s)	398
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	31, 287
MfeI	CAATTG	1 cut(s)	453
MluCI	AATT	2 cut(s)	79, 453
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	5 cut(s)	15, 40, 61, 244, 442
MroXI	GAANNNNTTC	1 cut(s)	286
MseI	TTAA	3 cut(s)	146, 360, 477
MspI	CCGG	1 cut(s)	354
MunI	CAATTG	1 cut(s)	453
MwoI	GCNNNNNNNGC	2 cut(s)	56, 126
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	2 cut(s)	60, 283
PceI	AGGCCT	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	11
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
PsiI	TTATAA	1 cut(s)	432
PspN4I	GGNNCC	2 cut(s)	60, 283
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SaqAI	TTAA	3 cut(s)	146, 360, 477
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	208
ScaI	AGTACT	1 cut(s)	246
SchI	GAGTC	1 cut(s)	274
SetI	ASST	5 cut(s)	30, 313, 323, 371, 505
SfaNI	GCATC	1 cut(s)	403
Sse9I	AATT	2 cut(s)	79, 453
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	3 cut(s)	84, 179, 340
SspMI	CTAG	1 cut(s)	248
StuI	AGGCCT	1 cut(s)	50
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	1 cut(s)	426
TasI	AATT	2 cut(s)	79, 453
TatI	WGTACW	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	146, 360, 477
Tru9I	TTAA	3 cut(s)	146, 360, 477
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	1 cut(s)	164
TspRI	CASTG	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	286
XspI	CTAG	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.