Rh2DG295700

AN1-like Zinc finger

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
35082922 .. 35084968
2047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG295700.1

Sequence Viewer

Length: 495 bp
ATGGAGCAAGAATCACAGAAGAGAAAGCTTGATGAGACTGGCATTGAGTCCTCAAATGCTCCCATTCTTTGTGTGAATAATTGTGGGTTTTTTGGAAGTGCCAAAACTAATGATATGTGCTCCAAATGCTACAAGGACTTTTTACTAACACAATCGGTGGAGGGTACCGCGATTGTGGAGAATAAGGTTGGGGAAGGTGGAAAAAATGTGGTGATCAAGTCCCATGTTGAGCAAGTAGTTGAAGAAGTTAGACAGAGTCAAGTTGAAGAAGGGGCGACTTCGGAAAACCCAGAGAAGCGACCTGCAAATAGGTGCAGCTTTTGTAGAAAGCGGGTTGGCCTCACAGGGTTCAAGTGCAGGTGTGGTGATACATTTTGCTCCCTGCATCGGTACTCCAACTCGCATAACTGCATGTTTGATTACAAGAGTGCAGGACAAGATGCCATTGCAAAGGCAAACCCTGTCATCAAGGCTGATAAAATTGATAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

164

Amino Acids

18.14

Weight (kDa)

8.01

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 22 - 45 1.7e-12 A20-like zinc finger
zf-AN1 PF01428 105 - 142 3.8e-09 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 348
Acc36I ACCTGC 2 cut(s) 310, 348
Acc65I GGTACC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 1 cut(s) 170
AciI CCGC 2 cut(s) 168, 331
AfaI GTAC 2 cut(s) 166, 392
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 3 cut(s) 242, 266, 352
AluBI AGCT 2 cut(s) 28, 318
AluI AGCT 2 cut(s) 28, 318
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 29
AoxI GGCC 1 cut(s) 337
ApeKI GCWGC 1 cut(s) 315
Asp718I GGTACC 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 223, 377
BanI GGYRCC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 327
BclI TGATCA 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 29
BfuAI ACCTGC 2 cut(s) 310, 348
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
BmiI GGNNCC 1 cut(s) 166
BmsI GCATC 2 cut(s) 394, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMI GCAATG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 327
BsgI GTGCAG 3 cut(s) 334, 376, 450
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 1 cut(s) 339
BshNI GGYRCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 122
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 2 cut(s) 168, 331
BspANI GGCC 1 cut(s) 339
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 166
BspMI ACCTGC 2 cut(s) 310, 348
BspT107I GGYRCC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 1 cut(s) 43
BssMI GATC 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 14
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNSI RCATGY 1 cut(s) 415
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 327
BsuRI GGCC 1 cut(s) 339
BveI ACCTGC 2 cut(s) 310, 348
Csp6I GTAC 2 cut(s) 165, 391
CviAII CATG 2 cut(s) 224, 412
CviJI RGCY 4 cut(s) 28, 318, 339, 473
CviKI_1 RGCY 4 cut(s) 28, 318, 339, 473
CviQI GTAC 2 cut(s) 165, 391
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
FaeI CATG 2 cut(s) 227, 415
FaiI YATR 5 cut(s) 116, 225, 405, 413, 493
FaqI GGGAC 1 cut(s) 205
FatI CATG 2 cut(s) 223, 411
FauI CCCGC 1 cut(s) 324
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 316
GluI GCNGC 1 cut(s) 316
HaeIII GGCC 1 cut(s) 339
Hin1II CATG 2 cut(s) 227, 415
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 3 cut(s) 11, 47, 256
HphI GGTGA 2 cut(s) 223, 377
Hpy188I TCNGA 1 cut(s) 283
HpyAV CCTTC 2 cut(s) 188, 263
HpyCH4V TGCA 7 cut(s) 305, 315, 357, 385, 411, 431, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
Hsp92II CATG 2 cut(s) 227, 415
KpnI GGTACC 1 cut(s) 168
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 4 cut(s) 4, 64, 125, 383
LpnPI CCDG 8 cut(s) 24, 303, 315, 330, 343, 395, 417, 474
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 2 cut(s) 394, 430
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 3 cut(s) 31, 254, 278
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 2 cut(s) 79, 480
MlyI GAGTC 2 cut(s) 56, 265
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 3 cut(s) 61, 154, 350
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 1 cut(s) 213
NlaIII CATG 2 cut(s) 227, 415
NlaIV GGNNCC 1 cut(s) 166
NspI RCATGY 1 cut(s) 415
PaqCI CACCTGC 1 cut(s) 348
PfeI GAWTC 1 cut(s) 11
PflFI GACNNNGTC 1 cut(s) 255
PkrI GCNGC 1 cut(s) 317
PleI GAGTC 2 cut(s) 55, 264
PpsI GAGTC 2 cut(s) 55, 264
PspN4I GGNNCC 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 255
RsaI GTAC 2 cut(s) 166, 392
RsaNI GTAC 2 cut(s) 165, 391
SatI GCNGC 1 cut(s) 316
Sau3AI GATC 1 cut(s) 213
SchI GAGTC 2 cut(s) 56, 265
SduI GDGCHC 1 cut(s) 122
SetI ASST 7 cut(s) 30, 189, 199, 304, 314, 320, 362
SfaNI GCATC 2 cut(s) 394, 430
Sse9I AATT 2 cut(s) 79, 480
SsiI CCGC 2 cut(s) 168, 331
TasI AATT 2 cut(s) 79, 480
TfiI GAWTC 1 cut(s) 11
TseI GCWGC 1 cut(s) 315
Tth111I GACNNNGTC 1 cut(s) 255
XceI RCATGY 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.