Rw2G021320

AN1-like Zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012567
Physical Location & Seq
Forward (+)
29541265 .. 29543671
2407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G021320.1

Sequence Viewer

Length: 336 bp
ATGGGTTCCGCGATTGTGGAGAATAAGGTTGGGGAAGGTGGAAAAAATGTGGTGATCAAGTCCCATGTTGAGCAAGTAGTTGAAGAAGTTAGACAGAGTCAAGTTGAAGAAGGGGCGACTTCGGAAAACCCCGAGAAGCGACCTGCAAATAGGTGCAGCTTTTGTAGAAAGCGGGTTGGCCTCACAGGGTTCAAGTGCAGGTGTGGTGATACATTTTGTTCCCTGCATCGGTACTCCAACTCGCATAACTGCATGTTTGATTACAAGAGTGCAGGACAAGATGCCATTGCGAAGGCAAACCCTGTCATCAAGGCTGATAAAATTGATAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

111

Amino Acids

12.23

Weight (kDa)

8.78

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 52 - 89 1.8e-09 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 189
Acc36I ACCTGC 2 cut(s) 151, 189
AccII CGCG 1 cut(s) 11
AciI CCGC 2 cut(s) 9, 172
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 3 cut(s) 83, 107, 193
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 156
AsuHPI GGTGA 2 cut(s) 64, 218
AvaI CYCGRG 1 cut(s) 131
BbvI GCAGC 1 cut(s) 168
BclI TGATCA 1 cut(s) 54
BfuAI ACCTGC 2 cut(s) 151, 189
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 2 cut(s) 235, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 285
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 168
BsgI GTGCAG 3 cut(s) 175, 217, 291
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 1 cut(s) 180
BsiHKCI CYCGRG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 131
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 2 cut(s) 9, 172
BspANI GGCC 1 cut(s) 180
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 2 cut(s) 151, 189
BsrDI GCAATG 1 cut(s) 285
BssMI GATC 1 cut(s) 54
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 256
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 180
BveI ACCTGC 2 cut(s) 151, 189
Csp6I GTAC 1 cut(s) 232
CviAII CATG 2 cut(s) 65, 253
CviJI RGCY 3 cut(s) 159, 180, 314
CviKI_1 RGCY 3 cut(s) 159, 180, 314
CviQI GTAC 1 cut(s) 232
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 131
FaeI CATG 2 cut(s) 68, 256
FaiI YATR 4 cut(s) 66, 246, 254, 334
FaqI GGGAC 1 cut(s) 46
FatI CATG 2 cut(s) 64, 252
FauI CCCGC 1 cut(s) 165
FbaI TGATCA 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 157
GluI GCNGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 180
Hin1II CATG 2 cut(s) 68, 256
HinfI GANTC 1 cut(s) 97
HphI GGTGA 2 cut(s) 64, 218
Hpy188I TCNGA 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 29, 104, 286
HpyCH4V TGCA 6 cut(s) 146, 156, 198, 226, 252, 272
Hsp92II CATG 2 cut(s) 68, 256
Ksp22I TGATCA 1 cut(s) 54
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 6 cut(s) 156, 171, 184, 236, 258, 315
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 2 cut(s) 235, 271
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 2 cut(s) 95, 119
MluCI AATT 1 cut(s) 321
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 1 cut(s) 191
MvnI CGCG 1 cut(s) 11
NdeII GATC 1 cut(s) 54
NlaIII CATG 2 cut(s) 68, 256
NlaIV GGNNCC 1 cut(s) 7
NspI RCATGY 1 cut(s) 256
PaqCI CACCTGC 1 cut(s) 189
PflFI GACNNNGTC 1 cut(s) 96
PkrI GCNGC 1 cut(s) 158
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 96
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 1 cut(s) 54
SchI GAGTC 1 cut(s) 106
SetI ASST 6 cut(s) 30, 40, 145, 155, 161, 203
SfaNI GCATC 2 cut(s) 235, 271
Sse9I AATT 1 cut(s) 321
SsiI CCGC 2 cut(s) 9, 172
TasI AATT 1 cut(s) 321
TseI GCWGC 1 cut(s) 156
Tth111I GACNNNGTC 1 cut(s) 96
XceI RCATGY 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.