Rorug02G0213900

AN1-like Zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012567
Physical Location & Seq
Forward (+)
20448142 .. 20449622
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0213900.1

Sequence Viewer

Length: 1080 bp
ATGTCTAACGAGCAAGAACACCCCAGGAAGGCATTTGGATGGGCTGCAAGAGATTCATCTGGTGTTCTCTCTCCCTTCAGTTTCTCCAGAAGGGAATCCGGAGAGAAAGATGTGACATTCAAAGTGTTGTACTGTGGGATTTGCCATTCGGACCTTCACATGGTCAAGAATGAATGGGGCTTCTCTACCTATCCTCTAGTTCCCGGGCATGAGATTGTCGGTGAAGTGACGGAAGTAGGGAGCAATGTACAAAAATTCAAAGTTGGAGACAAAGTCGGTGTTGGATCCATAGTGGGAGCTTGCCGATCTTGTGATAGTTGTACCGACCATCTTGAGAACTACTGCCCCAAACAAATACTCACGATCAGTGGCAAGTACTATGACGGAATCACCAACTATGGCGGTTACTCTGACATTATGGTTGCCGATGAACACTTCGTAGTCCGTATCCCGGACAGCCTACCCCTTGATGGTGCTGCTCCTCTCCTATGTGCCGGAATCACAACCTACAGCCCGTTGAGATATTTTGGACTTGACAAGCCCGGCATGCATGTGGGCGTGGTTGGCCTTGGTGGTTTAGGCCACGTCGCAGTGAAGTTTGCCAAGGCAATGGGAGTGAAGGTTACAGTGATCAGTACGTCCCCTAATAAGAAGGAGGAAGCAGTTAAACACCTAGGAGCTGATTCGTTTTTGGTTAGTCGTGACCAAGATCAAATGCAGGCTGCCATTGGTACCATGGATGGGATCATTGACACAGTTTCTGCACAACATCCTCTCTTGCCTTTGATTGGTTTGTTGAAGTCTCATGGAAAGCTTGTTATGCTTGGTGCACCAGAAAAGCCTCTTGAGCTTCCGGTTTTTCCTTTACTCACGGGAAGGAAGATGGTAGCTGGTAGCGGCATTGGAGGTATGAAGGAGACACAAGAGATGATCGATTTTGCAGCCAAGCACAACATAACAGCAGACATCGAGGTTATCCCAATTGACTACTTGAACACTGCCATGGAGCGCCTTGCCAAAGCAGACGTCAGATACCGTTTTGTCATTGACATTGGAAACACACTGAAGGCTAGCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

359

Amino Acids

38.73

Weight (kDa)

6.31

Isoelectric Point (pI)

31.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 34 - 152 1.4e-27 Alcohol dehydrogenase GroES-like domain
2-Hacid_dh_C PF02826 174 - 224 9.7e-06 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
AlaDh_PNT_C PF01262 184 - 254 3.7e-06 Alanine dehydrogenase/PNT, C-terminal domain
ADH_zinc_N PF00107 192 - 315 6.8e-22 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1029
Acc65I GGTACC 1 cut(s) 731
AccB1I GGYRCC 1 cut(s) 731
AccIII TCCGGA 1 cut(s) 98
AciI CCGC 2 cut(s) 402, 897
AclWI GGATC 3 cut(s) 279, 292, 752
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 61
AcyI GRCGYC 1 cut(s) 1026
AfaI GTAC 6 cut(s) 131, 249, 322, 377, 637, 733
AfiI CCNNNNNNNGG 6 cut(s) 28, 160, 451, 470, 741, 788
AgsI TTSAA 4 cut(s) 121, 259, 799, 994
AjiI CACGTC 1 cut(s) 586
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 6 cut(s) 299, 680, 814, 850, 890, 1074
AluI AGCT 6 cut(s) 299, 680, 814, 850, 890, 1074
Alw21I GWGCWC 1 cut(s) 832
Alw26I GTCTC 3 cut(s) 261, 807, 911
Alw44I GTGCAC 1 cut(s) 828
AlwI GGATC 3 cut(s) 279, 292, 752
AlwNI CAGNNNCTG 1 cut(s) 761
Ama87I CYCGRG 1 cut(s) 203
Aor13HI TCCGGA 1 cut(s) 98
AoxI GGCC 2 cut(s) 565, 580
ApaLI GTGCAC 1 cut(s) 828
ApeKI GCWGC 4 cut(s) 44, 476, 722, 941
ApoI RAATTY 1 cut(s) 254
ArsI GACNNNNNNTTYG 2 cut(s) 1011, 1043
Asp718I GGTACC 1 cut(s) 731
AspA2I CCTAGG 1 cut(s) 673
AspLEI GCGC 1 cut(s) 1011
AspS9I GGNCC 1 cut(s) 151
AsuC2I CCSGG 4 cut(s) 204, 205, 452, 543
AsuHPI GGTGA 2 cut(s) 233, 382
AsuNHI GCTAGC 1 cut(s) 1070
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 151
AvrII CCTAGG 1 cut(s) 673
BaeGI GKGCMC 1 cut(s) 832
BamHI GGATCC 1 cut(s) 284
BanI GGYRCC 1 cut(s) 731
Bbv12I GWGCWC 1 cut(s) 832
BbvI GCAGC 4 cut(s) 31, 463, 709, 953
BccI CCATC 5 cut(s) 33, 336, 464, 734, 877
BciT130I CCWGG 1 cut(s) 25
BciVI GTATCC 1 cut(s) 458
BclI TGATCA 1 cut(s) 630
BcnI CCSGG 4 cut(s) 204, 205, 452, 543
BcoDI GTCTC 3 cut(s) 261, 807, 911
BfaI CTAG 3 cut(s) 197, 674, 1071
BfmI CTRYAG 1 cut(s) 508
BfoI RGCGCY 1 cut(s) 1012
BfuI GTATCC 1 cut(s) 458
BisI GCNGC 5 cut(s) 45, 477, 723, 898, 942
BlnI CCTAGG 1 cut(s) 673
BlsI GCNGC 5 cut(s) 46, 478, 724, 899, 943
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 5 cut(s) 25, 204, 205, 452, 543
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 586
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 2 cut(s) 286, 733
BmrFI CCNGG 5 cut(s) 25, 204, 205, 452, 543
BmtI GCTAGC 1 cut(s) 1074
BpmI CTGGAG 1 cut(s) 70
BpuEI CTTGAG 2 cut(s) 353, 866
BpuMI CCSGG 4 cut(s) 204, 205, 452, 543
Bsa29I ATCGAT 1 cut(s) 933
BsaHI GRCGYC 1 cut(s) 1026
BsaJI CCNNGG 7 cut(s) 23, 203, 568, 603, 673, 735, 1002
BsaWI WCCGGW 2 cut(s) 98, 853
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 606, 636
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 160, 451, 470, 741, 788
Bse3DI GCAATG 2 cut(s) 250, 615
BseAI TCCGGA 1 cut(s) 98
BseBI CCWGG 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 933
BseDI CCNNGG 7 cut(s) 23, 203, 568, 603, 673, 735, 1002
BseGI GGATG 3 cut(s) 44, 745, 769
BseLI CCNNNNNNNGG 6 cut(s) 28, 160, 451, 470, 741, 788
BseMI GCAATG 2 cut(s) 250, 615
BseRI GAGGAG 1 cut(s) 471
BseSI GKGCMC 1 cut(s) 832
BseXI GCAGC 4 cut(s) 31, 463, 709, 953
BsgI GTGCAG 1 cut(s) 747
BshFI GGCC 2 cut(s) 567, 582
BshNI GGYRCC 1 cut(s) 731
BshVI ATCGAT 1 cut(s) 933
BsiHKAI GWGCWC 1 cut(s) 832
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 6 cut(s) 99, 204, 452, 495, 543, 854
BslFI GGGAC 1 cut(s) 625
BslI CCNNNNNNNGG 6 cut(s) 28, 160, 451, 470, 741, 788
BsmAI GTCTC 3 cut(s) 261, 807, 911
BsmFI GGGAC 1 cut(s) 625
BsnI GGCC 2 cut(s) 567, 582
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 832
Bsp13I TCCGGA 1 cut(s) 98
Bsp1407I TGTACA 1 cut(s) 247
Bsp143I GATC 7 cut(s) 284, 305, 363, 630, 709, 744, 930
Bsp19I CCATGG 2 cut(s) 735, 1002
BspACI CCGC 2 cut(s) 402, 897
BspANI GGCC 2 cut(s) 567, 582
BspDI ATCGAT 1 cut(s) 933
BspEI TCCGGA 1 cut(s) 98
BspLI GGNNCC 2 cut(s) 286, 733
BspOI GCTAGC 1 cut(s) 1074
BspPI GGATC 3 cut(s) 279, 292, 752
BspT107I GGYRCC 1 cut(s) 731
BsrDI GCAATG 2 cut(s) 250, 615
BsrGI TGTACA 1 cut(s) 247
BssECI CCNNGG 7 cut(s) 23, 203, 568, 603, 673, 735, 1002
BssMI GATC 7 cut(s) 284, 305, 363, 630, 709, 744, 930
BssNI GRCGYC 1 cut(s) 1026
BssT1I CCWWGG 5 cut(s) 568, 603, 673, 735, 1002
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 4 cut(s) 134, 628, 757, 1037
BstACI GRCGYC 1 cut(s) 1026
BstAUI TGTACA 1 cut(s) 247
BstC8I GCNNGC 4 cut(s) 301, 548, 720, 1072
BstDSI CCRYGG 2 cut(s) 735, 1002
BstF5I GGATG 3 cut(s) 44, 745, 769
BstH2I RGCGCY 1 cut(s) 1012
BstHHI GCGC 1 cut(s) 1011
BstKTI GATC 7 cut(s) 287, 308, 366, 633, 712, 747, 933
BstMAI GTCTC 3 cut(s) 261, 807, 911
BstMBI GATC 7 cut(s) 284, 305, 363, 630, 709, 744, 930
BstMWI GCNNNNNNNGC 4 cut(s) 547, 564, 820, 847
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 2 cut(s) 550, 554
BstSCI CCNGG 5 cut(s) 23, 202, 203, 450, 541
BstSFI CTRYAG 1 cut(s) 508
BstSLI GKGCMC 1 cut(s) 832
BstV1I GCAGC 4 cut(s) 31, 463, 709, 953
BstX2I RGATCY 1 cut(s) 284
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 1 cut(s) 284
Bsu15I ATCGAT 1 cut(s) 933
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 2 cut(s) 567, 582
BsuTUI ATCGAT 1 cut(s) 933
BtgI CCRYGG 2 cut(s) 735, 1002
BtrI CACGTC 1 cut(s) 586
BtsCI GGATG 3 cut(s) 44, 745, 769
BtsI GCAGTG 2 cut(s) 597, 996
BtsIMutI CAGTG 5 cut(s) 373, 597, 633, 996, 1061
Cac8I GCNNGC 4 cut(s) 301, 548, 720, 1072
CaiI CAGNNNCTG 1 cut(s) 761
CfoI GCGC 1 cut(s) 1011
Cfr13I GGNCC 1 cut(s) 151
Cfr9I CCCGGG 1 cut(s) 203
ClaI ATCGAT 1 cut(s) 933
Csp6I GTAC 6 cut(s) 130, 248, 321, 376, 636, 732
CviAII CATG 7 cut(s) 160, 209, 547, 551, 736, 806, 1003
CviQI GTAC 6 cut(s) 130, 248, 321, 376, 636, 732
DpnI GATC 7 cut(s) 286, 307, 365, 632, 711, 746, 932
DpnII GATC 7 cut(s) 284, 305, 363, 630, 709, 744, 930
Eco130I CCWWGG 5 cut(s) 568, 603, 673, 735, 1002
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 23
EcoT14I CCWWGG 5 cut(s) 568, 603, 673, 735, 1002
EcoT22I ATGCAT 1 cut(s) 552
ErhI CCWWGG 5 cut(s) 568, 603, 673, 735, 1002
FaeI CATG 7 cut(s) 163, 212, 550, 554, 739, 809, 1006
FaqI GGGAC 1 cut(s) 625
FatI CATG 7 cut(s) 159, 208, 546, 550, 735, 805, 1002
FbaI TGATCA 1 cut(s) 630
Fnu4HI GCNGC 5 cut(s) 45, 477, 723, 898, 942
FokI GGATG 3 cut(s) 51, 752, 756
Fsp4HI GCNGC 5 cut(s) 45, 477, 723, 898, 942
FspBI CTAG 3 cut(s) 197, 674, 1071
GlaI GCGC 1 cut(s) 1010
GluI GCNGC 5 cut(s) 45, 477, 723, 898, 942
GsuI CTGGAG 1 cut(s) 70
HaeII RGCGCY 1 cut(s) 1012
HaeIII GGCC 2 cut(s) 567, 582
HapII CCGG 6 cut(s) 99, 204, 452, 495, 543, 854
HhaI GCGC 1 cut(s) 1011
Hin1I GRCGYC 1 cut(s) 1026
Hin1II CATG 7 cut(s) 163, 212, 550, 554, 739, 809, 1006
Hin6I GCGC 1 cut(s) 1009
HinP1I GCGC 1 cut(s) 1009
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 5 cut(s) 53, 95, 387, 498, 683
HpaII CCGG 6 cut(s) 99, 204, 452, 495, 543, 854
HphI GGTGA 2 cut(s) 233, 382
Hpy166II GTNNAC 1 cut(s) 830
Hpy188I TCNGA 3 cut(s) 151, 412, 1031
Hpy188III TCNNGA 7 cut(s) 87, 99, 166, 332, 361, 701, 845
Hpy8I GTNNAC 1 cut(s) 830
Hpy99I CGWCG 1 cut(s) 590
HpyAV CCTTC 9 cut(s) 22, 84, 85, 164, 613, 646, 870, 907, 1060
HpyCH4III ACNGT 4 cut(s) 134, 628, 757, 1037
HpyCH4IV ACGT 3 cut(s) 585, 638, 1026
HpyCH4V TGCA 6 cut(s) 47, 550, 718, 764, 830, 941
HpyF10VI GCNNNNNNNGC 4 cut(s) 547, 564, 820, 847
HpySE526I ACGT 3 cut(s) 585, 638, 1026
Hsp92I GRCGYC 1 cut(s) 1026
Hsp92II CATG 7 cut(s) 163, 212, 550, 554, 739, 809, 1006
HspAI GCGC 1 cut(s) 1009
Kpn2I TCCGGA 1 cut(s) 98
KpnI GGTACC 1 cut(s) 735
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 7 cut(s) 284, 305, 363, 630, 709, 744, 930
LmnI GCTCC 5 cut(s) 240, 296, 484, 677, 1006
Lsp1109I GCAGC 4 cut(s) 31, 463, 709, 953
MaeI CTAG 3 cut(s) 197, 674, 1071
MaeII ACGT 3 cut(s) 585, 638, 1026
MaeIII GTNAC 5 cut(s) 112, 226, 404, 622, 701
MalI GATC 7 cut(s) 286, 307, 365, 632, 711, 746, 932
MboI GATC 7 cut(s) 284, 305, 363, 630, 709, 744, 930
MboII GAAGA 1 cut(s) 892
MfeI CAATTG 1 cut(s) 981
MflI RGATCY 1 cut(s) 284
MhlI GDGCHC 1 cut(s) 832
MluCI AATT 2 cut(s) 254, 981
MmeI TCCRAC 2 cut(s) 244, 262
MnlI CCTC 7 cut(s) 204, 492, 649, 783, 852, 899, 964
Mph1103I ATGCAT 1 cut(s) 552
MroI TCCGGA 1 cut(s) 98
MseI TTAA 2 cut(s) 666, 1078
MslI CAYNNNNRTG 3 cut(s) 37, 551, 1001
MspI CCGG 6 cut(s) 99, 204, 452, 495, 543, 854
MspR9I CCNGG 5 cut(s) 25, 204, 205, 452, 543
MunI CAATTG 1 cut(s) 981
MvaI CCWGG 1 cut(s) 25
MwoI GCNNNNNNNGC 4 cut(s) 547, 564, 820, 847
NciI CCSGG 4 cut(s) 204, 205, 452, 543
NcoI CCATGG 2 cut(s) 735, 1002
NdeII GATC 7 cut(s) 284, 305, 363, 630, 709, 744, 930
NheI GCTAGC 1 cut(s) 1070
NlaIII CATG 7 cut(s) 163, 212, 550, 554, 739, 809, 1006
NlaIV GGNNCC 2 cut(s) 286, 733
NmuCI GTSAC 3 cut(s) 112, 226, 701
NsiI ATGCAT 1 cut(s) 552
NspI RCATGY 2 cut(s) 550, 554
PaeI GCATGC 1 cut(s) 550
PfeI GAWTC 5 cut(s) 53, 95, 387, 498, 683
PflFI GACNNNGTC 1 cut(s) 272
PfoI TCCNGGA 1 cut(s) 450
PkrI GCNGC 5 cut(s) 46, 478, 724, 899, 943
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 286, 733
PspPI GGNCC 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 1 cut(s) 284
PsyI GACNNNGTC 1 cut(s) 272
RsaI GTAC 6 cut(s) 131, 249, 322, 377, 637, 733
RsaNI GTAC 6 cut(s) 130, 248, 321, 376, 636, 732
RseI CAYNNNNRTG 3 cut(s) 37, 551, 1001
SaqAI TTAA 2 cut(s) 666, 1078
SatI GCNGC 5 cut(s) 45, 477, 723, 898, 942
Sau3AI GATC 7 cut(s) 284, 305, 363, 630, 709, 744, 930
Sau96I GGNCC 1 cut(s) 151
ScaI AGTACT 1 cut(s) 377
ScrFI CCNGG 5 cut(s) 25, 204, 205, 452, 543
SduI GDGCHC 1 cut(s) 832
SfcI CTRYAG 1 cut(s) 508
SinI GGWCC 1 cut(s) 151
SmaI CCCGGG 1 cut(s) 205
SmiMI CAYNNNNRTG 3 cut(s) 37, 551, 1001
SmlI CTYRAG 2 cut(s) 332, 845
SmoI CTYRAG 2 cut(s) 332, 845
SphI GCATGC 1 cut(s) 550
Sse9I AATT 2 cut(s) 254, 981
SsiI CCGC 2 cut(s) 402, 897
SspMI CTAG 3 cut(s) 197, 674, 1071
StyD4I CCNGG 5 cut(s) 23, 202, 203, 450, 541
StyI CCWWGG 5 cut(s) 568, 603, 673, 735, 1002
TaaI ACNGT 4 cut(s) 134, 628, 757, 1037
TaiI ACGT 3 cut(s) 588, 641, 1029
TaqI TCGA 2 cut(s) 933, 969
TasI AATT 2 cut(s) 254, 981
TatI WGTACW 3 cut(s) 129, 247, 375
TauI GCSGC 1 cut(s) 900
TfiI GAWTC 5 cut(s) 53, 95, 387, 498, 683
Tru1I TTAA 2 cut(s) 666, 1078
Tru9I TTAA 2 cut(s) 666, 1078
TscAI CASTG 5 cut(s) 373, 597, 633, 1003, 1068
TseFI GTSAC 3 cut(s) 112, 226, 701
TseI GCWGC 4 cut(s) 44, 476, 722, 941
Tsp45I GTSAC 3 cut(s) 112, 226, 701
TspDTI ATGAA 4 cut(s) 45, 186, 444, 926
TspGWI ACGGA 3 cut(s) 245, 399, 434
TspMI CCCGGG 1 cut(s) 203
TspRI CASTG 5 cut(s) 373, 597, 633, 1003, 1068
Tth111I GACNNNGTC 1 cut(s) 272
VneI GTGCAC 1 cut(s) 828
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 254
XceI RCATGY 2 cut(s) 550, 554
XcmI CCANNNNNNNNNTGG 1 cut(s) 733
XmaI CCCGGG 1 cut(s) 203
XmaJI CCTAGG 1 cut(s) 673
XspI CTAG 3 cut(s) 197, 674, 1071
ZraI GACGTC 1 cut(s) 1027
ZrmI AGTACT 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.