Rorug02G0214000

AN1-like Zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012567
Physical Location & Seq
Reverse (-)
20450628 .. 20452551
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0214000.1

Sequence Viewer

Length: 870 bp
ATGGGTGCGACCAAGACTAGGACGAGTAGCTTCTCTCGCAGTGTTTCGGGTGCAAGCTCACCTCAAATCCCAGGACTCAAGCATGGACCCAATGGGACAATGTTTGTGTCATCTGGGATTCCAGACCTTGACAGACTCGTTCGCAACCAACCCCTTCTCTATGCAAGCCCAGCCAAGGACCCAACACAGTTTCTTGGTACTTTGCCTAGTCCAGCCGTACCTAAAGATGAAAAGTCTAGTCATCGAGACCCTGATCAGGAGAAAGGGTTGAGGATAGCTTGGCAATACAAGAAGTATTTTGGTGAAAATCAGCAGGGTTTTGATAGTCAAAGTAATCTCATTAAGCACATAGCTGGTTTGGATTTTGAGAGCAATTTTCTATGCTATCATTGTCCTGATGGGAAACATGAGTTCTGCAACAACTTTGACTTGCGAAAGCCCTTGGAGAGGCAGTTTCTTATGGGCAAGCGAATAGATTGTGCTAGCATTCTCGATTCTTCAAATCTTGTCACACTTTATGATGGTTGTGCTACATTTTTATCACAATTTCCAAGAAGTGACAGCAACATGTCTTGTGTTGGTCGTATTGTCATTCAATCATTCTGTGCTTCACAGTGTGGATATTCCAGCCTGGTGAGAATGGGGCATACTTCCTTCCGTAGATCTCTAAAAAGCATGCTACGATCTTCAAATGCAGTTGCTGTTGTGACATTTTCGCCTAGTCTTCTTTCATCATCCTCCTATACAAGATGGCAGCACATGGCAGACAACTTGCTGTCAGTTCAAGCAATTCCAGATGAGGACAAGGAATTGGCAACGCTCCTTACTGGTACGAGGACATGGTTGGCCTTCTTAATGTGCAGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

289

Amino Acids

32.13

Weight (kDa)

9.05

Isoelectric Point (pI)

49.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAXNEB PF05625 46 - 276 5.6e-34 PAXNEB protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 617
AfaI GTAC 3 cut(s) 199, 219, 832
AfiI CCNNNNNNNGG 4 cut(s) 18, 175, 256, 447
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 4 cut(s) 501, 596, 690, 785
AjnI CCWGG 2 cut(s) 70, 630
AluBI AGCT 4 cut(s) 30, 57, 278, 353
AluI AGCT 4 cut(s) 30, 57, 278, 353
Alw26I GTCTC 1 cut(s) 240
AlwNI CAGNNNCTG 1 cut(s) 701
AoxI GGCC 1 cut(s) 846
ApeKI GCWGC 1 cut(s) 754
AspS9I GGNCC 2 cut(s) 86, 178
AsuHPI GGTGA 3 cut(s) 51, 314, 646
AsuNHI GCTAGC 1 cut(s) 482
AvaII GGWCC 2 cut(s) 86, 178
BbsI GAAGAC 1 cut(s) 716
BbvI GCAGC 1 cut(s) 766
BccI CCATC 3 cut(s) 392, 515, 744
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 2 cut(s) 72, 632
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 5 cut(s) 18, 207, 237, 483, 720
BglII AGATCT 1 cut(s) 662
BisI GCNGC 1 cut(s) 755
BlsI GCNGC 1 cut(s) 756
Bme1390I CCNGG 2 cut(s) 72, 632
Bme18I GGWCC 2 cut(s) 86, 178
BmgT120I GGNCC 2 cut(s) 86, 178
BmiI GGNNCC 2 cut(s) 88, 180
BmrFI CCNGG 2 cut(s) 72, 632
BmtI GCTAGC 1 cut(s) 486
BpiI GAAGAC 1 cut(s) 716
BpuEI CTTGAG 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 240
BsaJI CCNNGG 3 cut(s) 70, 174, 441
BsaXI ACNNNNNCTCC 4 cut(s) 251, 281, 437, 467
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 175, 256, 447
Bse1I ACTGG 1 cut(s) 832
BseBI CCWGG 2 cut(s) 72, 632
BseDI CCNNGG 3 cut(s) 70, 174, 441
BseGI GGATG 1 cut(s) 734
BseLI CCNNNNNNNGG 4 cut(s) 18, 175, 256, 447
BseNI ACTGG 1 cut(s) 832
BseXI GCAGC 1 cut(s) 766
BseYI CCCAGC 1 cut(s) 169
BshFI GGCC 1 cut(s) 848
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 4 cut(s) 18, 175, 256, 447
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 109
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 1 cut(s) 848
Bso31I GGTCTC 1 cut(s) 240
Bsp143I GATC 3 cut(s) 253, 662, 683
BspANI GGCC 1 cut(s) 848
BspLI GGNNCC 2 cut(s) 88, 180
BspOI GCTAGC 1 cut(s) 486
BspTNI GGTCTC 1 cut(s) 240
BsrI ACTGG 1 cut(s) 832
BssECI CCNNGG 3 cut(s) 70, 174, 441
BssMI GATC 3 cut(s) 253, 662, 683
BssT1I CCWWGG 2 cut(s) 174, 441
Bst2UI CCWGG 2 cut(s) 72, 632
Bst4CI ACNGT 2 cut(s) 189, 615
BstC8I GCNNGC 5 cut(s) 55, 166, 467, 484, 677
BstENI CCTNNNNNAGG 1 cut(s) 445
BstF5I GGATG 1 cut(s) 734
BstKTI GATC 3 cut(s) 256, 665, 686
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 3 cut(s) 253, 662, 683
BstMWI GCNNNNNNNGC 2 cut(s) 36, 170
BstNI CCWGG 2 cut(s) 72, 632
BstNSI RCATGY 2 cut(s) 571, 679
BstSCI CCNGG 2 cut(s) 70, 630
BstV1I GCAGC 1 cut(s) 766
BstV2I GAAGAC 1 cut(s) 716
BstX2I RGATCY 1 cut(s) 662
BstYI RGATCY 1 cut(s) 662
BsuRI GGCC 1 cut(s) 848
BtsCI GGATG 1 cut(s) 734
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 2 cut(s) 46, 620
Cac8I GCNNGC 5 cut(s) 55, 166, 467, 484, 677
CaiI CAGNNNCTG 1 cut(s) 701
Cfr13I GGNCC 2 cut(s) 86, 178
Csp6I GTAC 3 cut(s) 198, 218, 831
CviAII CATG 6 cut(s) 83, 407, 568, 676, 760, 840
CviQI GTAC 3 cut(s) 198, 218, 831
DpnI GATC 3 cut(s) 255, 664, 685
DpnII GATC 3 cut(s) 253, 662, 683
DraIII CACNNNGTG 1 cut(s) 617
Eco130I CCWWGG 2 cut(s) 174, 441
Eco31I GGTCTC 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 86, 178
EcoNI CCTNNNNNAGG 1 cut(s) 445
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 2 cut(s) 70, 630
EcoT14I CCWWGG 2 cut(s) 174, 441
ErhI CCWWGG 2 cut(s) 174, 441
FaeI CATG 6 cut(s) 86, 410, 571, 679, 763, 843
FaqI GGGAC 1 cut(s) 109
FatI CATG 6 cut(s) 82, 406, 567, 675, 759, 839
FbaI TGATCA 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 755
FokI GGATG 1 cut(s) 721
Fsp4HI GCNGC 1 cut(s) 755
FspBI CTAG 5 cut(s) 18, 207, 237, 483, 720
GluI GCNGC 1 cut(s) 755
GsaI CCCAGC 1 cut(s) 173
HaeIII GGCC 1 cut(s) 848
Hin1II CATG 6 cut(s) 86, 410, 571, 679, 763, 843
HinfI GANTC 4 cut(s) 75, 118, 135, 494
HphI GGTGA 3 cut(s) 51, 314, 646
Hpy188III TCNNGA 6 cut(s) 122, 245, 257, 395, 491, 794
HpyAV CCTTC 3 cut(s) 164, 664, 859
HpyCH4III ACNGT 2 cut(s) 189, 615
HpyCH4V TGCA 5 cut(s) 53, 164, 417, 695, 861
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 170
Hsp92II CATG 6 cut(s) 86, 410, 571, 679, 763, 843
Ksp22I TGATCA 1 cut(s) 253
Kzo9I GATC 3 cut(s) 253, 662, 683
LmnI GCTCC 1 cut(s) 825
Lsp1109I GCAGC 1 cut(s) 766
MaeI CTAG 5 cut(s) 18, 207, 237, 483, 720
MaeIII GTNAC 3 cut(s) 508, 557, 706
MalI GATC 3 cut(s) 255, 664, 685
MboI GATC 3 cut(s) 253, 662, 683
MboII GAAGA 3 cut(s) 489, 678, 716
MflI RGATCY 1 cut(s) 662
MluCI AATT 4 cut(s) 373, 545, 789, 809
MlyI GAGTC 2 cut(s) 69, 129
MnlI CCTC 6 cut(s) 72, 264, 441, 748, 793, 828
MseI TTAA 2 cut(s) 342, 854
MspR9I CCNGG 2 cut(s) 72, 632
Mva1269I GAATGC 1 cut(s) 486
MvaI CCWGG 2 cut(s) 72, 632
MwoI GCNNNNNNNGC 2 cut(s) 36, 170
NdeII GATC 3 cut(s) 253, 662, 683
NheI GCTAGC 1 cut(s) 482
NlaIII CATG 6 cut(s) 86, 410, 571, 679, 763, 843
NlaIV GGNNCC 2 cut(s) 88, 180
NmuCI GTSAC 3 cut(s) 508, 557, 706
NspI RCATGY 2 cut(s) 571, 679
PaeI GCATGC 1 cut(s) 679
PciI ACATGT 1 cut(s) 567
PctI GAATGC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 118, 494
PkrI GCNGC 1 cut(s) 756
PleI GAGTC 2 cut(s) 69, 129
PpsI GAGTC 2 cut(s) 69, 129
PpuMI RGGWCCY 1 cut(s) 178
PscI ACATGT 1 cut(s) 567
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 2 cut(s) 70, 630
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 2 cut(s) 70, 630
PspN4I GGNNCC 2 cut(s) 88, 180
PspPI GGNCC 2 cut(s) 86, 178
PspPPI RGGWCCY 1 cut(s) 178
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 1 cut(s) 662
RsaI GTAC 3 cut(s) 199, 219, 832
RsaNI GTAC 3 cut(s) 198, 218, 831
SaqAI TTAA 2 cut(s) 342, 854
SatI GCNGC 1 cut(s) 755
Sau3AI GATC 3 cut(s) 253, 662, 683
Sau96I GGNCC 2 cut(s) 86, 178
SchI GAGTC 2 cut(s) 69, 129
ScrFI CCNGG 2 cut(s) 72, 632
SetI ASST 7 cut(s) 32, 59, 64, 129, 223, 280, 355
SinI GGWCC 2 cut(s) 86, 178
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SphI GCATGC 1 cut(s) 679
Sse9I AATT 4 cut(s) 373, 545, 789, 809
SspMI CTAG 5 cut(s) 18, 207, 237, 483, 720
StyD4I CCNGG 2 cut(s) 70, 630
StyI CCWWGG 2 cut(s) 174, 441
TaaI ACNGT 2 cut(s) 189, 615
TaqI TCGA 2 cut(s) 244, 492
TasI AATT 4 cut(s) 373, 545, 789, 809
TfiI GAWTC 2 cut(s) 118, 494
Tru1I TTAA 2 cut(s) 342, 854
Tru9I TTAA 2 cut(s) 342, 854
TscAI CASTG 2 cut(s) 46, 620
TseFI GTSAC 3 cut(s) 508, 557, 706
TseI GCWGC 1 cut(s) 754
Tsp45I GTSAC 3 cut(s) 508, 557, 706
TspDTI ATGAA 2 cut(s) 243, 720
TspGWI ACGGA 1 cut(s) 647
TspRI CASTG 2 cut(s) 46, 620
VpaK11BI GGWCC 2 cut(s) 86, 178
XagI CCTNNNNNAGG 1 cut(s) 445
XceI RCATGY 2 cut(s) 571, 679
XspI CTAG 5 cut(s) 18, 207, 237, 483, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.