Rroxscaffold_2G00126240

AN1-like Zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0012567
Physical Location & Seq
Reverse (-)
61368910 .. 61369404
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00126240.1

Sequence Viewer

Length: 495 bp
ATGGAGCAAGAATCACAGAAGAGAAAGCTTGATGAGACTGGCATTGAGGCCTCAAATGCTCCCATTCTTTGTGTGAATAATTGTGGGTTTTTTGGAAGTGCCAAAACTAATGATATGTGCTCCAAATGCTACAAGGACTTTTTACTAACACAATCGGTGGAGGGTACCGCGATTGTGGAGAATAAGGTTGGGGAAGGTGGAAAAAATGTGGTGATCAAGTCCCATGTTGAGCAAGTAGTTGAAGAAGTTATACAGAGTCAAGTTGAAGAAGGGGCGACTTCAGAAAACCCCGAGAAGCGACCTGCAAATAGGTGCAGCTTTTGTAGAAAGCGGGTTGGCCTCACGGGGTTCAAGTGCAGGTGTGGTGATACATTTTGCTCCCTGCATCGGTACTCCAACTCACATAACTGCATGTTTGATTACAAGAGTGCAGGACAAGATGCCATTGCGAAGGCAAACCCTGTCATCAAGGCTGATAAAATTGATAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-A20 zf-AN1

Protein Analysis

164

Amino Acids

18.08

Weight (kDa)

7.48

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-A20 PF01754 22 - 45 1.7e-12 A20-like zinc finger
zf-AN1 PF01428 105 - 142 3.8e-09 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 348
Acc36I ACCTGC 2 cut(s) 310, 348
Acc65I GGTACC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 1 cut(s) 170
AciI CCGC 2 cut(s) 168, 331
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 2 cut(s) 166, 392
AfiI CCNNNNNNNGG 1 cut(s) 387
AgsI TTSAA 3 cut(s) 242, 266, 352
AluBI AGCT 2 cut(s) 28, 318
AluI AGCT 2 cut(s) 28, 318
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 2 cut(s) 48, 337
ApeKI GCWGC 1 cut(s) 315
Asp718I GGTACC 1 cut(s) 164
AsuHPI GGTGA 2 cut(s) 223, 377
AvaI CYCGRG 1 cut(s) 290
BanI GGYRCC 1 cut(s) 164
BarI GAAGNNNNNNTAC 2 cut(s) 234, 266
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 1 cut(s) 327
BclI TGATCA 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 29
BfuAI ACCTGC 2 cut(s) 310, 348
BisI GCNGC 1 cut(s) 316
BlsI GCNGC 1 cut(s) 317
BmeT110I CYCGRG 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 166
BmsI GCATC 2 cut(s) 394, 430
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMI GCAATG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 327
BsgI GTGCAG 3 cut(s) 334, 376, 450
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 2 cut(s) 50, 339
BshNI GGYRCC 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 290
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 1 cut(s) 29
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 2 cut(s) 50, 339
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 2 cut(s) 168, 331
BspANI GGCC 2 cut(s) 50, 339
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 166
BspMI ACCTGC 2 cut(s) 310, 348
BspT107I GGYRCC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 444
BsrI ACTGG 1 cut(s) 43
BssMI GATC 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 14
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 2 cut(s) 56, 126
BstNSI RCATGY 1 cut(s) 415
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 327
BsuRI GGCC 2 cut(s) 50, 339
BveI ACCTGC 2 cut(s) 310, 348
Csp6I GTAC 2 cut(s) 165, 391
CviAII CATG 2 cut(s) 224, 412
CviJI RGCY 5 cut(s) 28, 50, 318, 339, 473
CviKI_1 RGCY 5 cut(s) 28, 50, 318, 339, 473
CviQI GTAC 2 cut(s) 165, 391
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco147I AGGCCT 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 264
Eco88I CYCGRG 1 cut(s) 290
FaeI CATG 2 cut(s) 227, 415
FaiI YATR 6 cut(s) 116, 225, 251, 405, 413, 493
FaqI GGGAC 1 cut(s) 205
FatI CATG 2 cut(s) 223, 411
FauI CCCGC 1 cut(s) 324
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 316
Fsp4HI GCNGC 1 cut(s) 316
GluI GCNGC 1 cut(s) 316
HaeIII GGCC 2 cut(s) 50, 339
Hin1II CATG 2 cut(s) 227, 415
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 2 cut(s) 11, 256
HphI GGTGA 2 cut(s) 223, 377
Hpy188I TCNGA 1 cut(s) 283
HpyAV CCTTC 3 cut(s) 188, 263, 445
HpyCH4V TGCA 6 cut(s) 305, 315, 357, 385, 411, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 126
Hsp92II CATG 2 cut(s) 227, 415
KpnI GGTACC 1 cut(s) 168
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 4 cut(s) 4, 64, 125, 383
LpnPI CCDG 6 cut(s) 24, 315, 343, 395, 417, 474
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 2 cut(s) 394, 430
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 3 cut(s) 31, 254, 278
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 2 cut(s) 79, 480
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 4 cut(s) 40, 61, 154, 350
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 56, 126
NdeII GATC 1 cut(s) 213
NlaIII CATG 2 cut(s) 227, 415
NlaIV GGNNCC 1 cut(s) 166
NspI RCATGY 1 cut(s) 415
PaqCI CACCTGC 1 cut(s) 348
PceI AGGCCT 1 cut(s) 50
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 317
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 166
RsaI GTAC 2 cut(s) 166, 392
RsaNI GTAC 2 cut(s) 165, 391
SatI GCNGC 1 cut(s) 316
Sau3AI GATC 1 cut(s) 213
SchI GAGTC 1 cut(s) 265
SduI GDGCHC 1 cut(s) 122
SetI ASST 7 cut(s) 30, 189, 199, 304, 314, 320, 362
SfaNI GCATC 2 cut(s) 394, 430
Sse9I AATT 2 cut(s) 79, 480
SseBI AGGCCT 1 cut(s) 50
SsiI CCGC 2 cut(s) 168, 331
StuI AGGCCT 1 cut(s) 50
TasI AATT 2 cut(s) 79, 480
TfiI GAWTC 1 cut(s) 11
TseI GCWGC 1 cut(s) 315
XceI RCATGY 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.