FvH4_1g23630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0016246
Physical Location & Seq
Forward (+)
15448205 .. 15451261
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23630.t1

Sequence Viewer

Length: 573 bp
ATGGGAGGATGTGCAACGAAGCCTAAGGTGTCAAAGGAGAAGGAGGTAGCCGGCGTGGAGGCGCCAGTGCCGGCTCCGGAGACGGCCAAGGAAGAAGCAGTCGTAGTCGAGACGAAGGAGAAGGAAGTAGTAGTGACTGGTGATGAATCGGAGAAGAAGATAGAAGGTAGTGATAATACAGTCAAGGAGATCGTTGATGATGATGAAGATAAACGCAAGTCTCTCAGCAATTTGTTCCAGAATGAAGAAGGGAAGGACTTGATAGAAAAAGAGAAGACAACAGAAGTATCAGAAACTGTAAAGCCTCTAGAGGAAATTACCCCTGAAATTGCTGTTGTGGATGCTCCAAAGGCGGCTGAGTCCACTGAGGTAGCAATTGAAGCTGCACCAGCAGAGACAGAAGCCACAGAAACTCCGGTGGAAAAAATTACCGAAGAAGTTGAAAAGATCATGGAAGAAGTCAAGGAAATTGCTGAAGAGAAAGTTGCAAAAGAAAATTCCGAAGAAAAAAAAGAGACCGAAGCAGCGAAGGAAGAAAGTGTAGCTGAAGAAAAACCCAAGGAAGCAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.71

Weight (kDa)

4.4

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016246)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23630
malus_domestica MD15G1341200.v1.1
prunus_persica Prupe.6G162300_v2.0.a1 Prupe.6G162300_v2.0.a1
pyrus_communis pycom01g02920
rosa_chinensis RchiOBHm_Chr2g0119231
rosa_laevigata RLG00000018457
rosa_multiflora Rmu_sc0004760.1_g000013
rosa_roxburghii Rroxscaffold_2G00124420
rosa_rugosa Rorug02G0221100
rosa_samantha Rh2AG279100 Rh2BG289900 Rh2DG285000 Rh2DG304000
rosa_wichuraiana Rw2G022190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AccIII TCCGGA 1 cut(s) 76
AciI CCGC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 1 cut(s) 496
AcuI CTGAAG 2 cut(s) 495, 567
AcyI GRCGYC 1 cut(s) 62
AgsI TTSAA 2 cut(s) 380, 443
AluBI AGCT 2 cut(s) 383, 545
AluI AGCT 2 cut(s) 383, 545
Alw26I GTCTC 5 cut(s) 74, 104, 225, 389, 509
AlwNI CAGNNNCTG 1 cut(s) 296
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 2 cut(s) 383, 524
ApoI RAATTY 1 cut(s) 496
AspLEI GCGC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 152
AxyI CCTNAGG 1 cut(s) 24
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BanI GGYRCC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 281
BbvI GCAGC 2 cut(s) 370, 536
BceAI ACGGC 1 cut(s) 99
BcoDI GTCTC 5 cut(s) 74, 104, 225, 389, 509
BfaI CTAG 1 cut(s) 308
BfoI RGCGCY 1 cut(s) 65
BisI GCNGC 3 cut(s) 354, 384, 525
BlsI GCNGC 3 cut(s) 355, 385, 526
BmiI GGNNCC 2 cut(s) 63, 75
BmsI GCATC 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 509
BsaJI CCNNGG 2 cut(s) 87, 558
BsaWI WCCGGW 2 cut(s) 76, 415
BsaXI ACNNNNNCTCC 2 cut(s) 397, 427
Bse118I RCCGGY 2 cut(s) 50, 70
Bse1I ACTGG 2 cut(s) 65, 142
Bse21I CCTNAGG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 76
BseDI CCNNGG 2 cut(s) 87, 558
BseGI GGATG 2 cut(s) 14, 346
BseMII CTCAG 3 cut(s) 238, 348, 357
BseNI ACTGG 2 cut(s) 65, 142
BseXI GCAGC 2 cut(s) 370, 536
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 61
BsiSI CCGG 4 cut(s) 51, 71, 77, 416
BsmAI GTCTC 5 cut(s) 74, 104, 225, 389, 509
BsmBI CGTCTC 2 cut(s) 74, 104
BsnI GGCC 1 cut(s) 86
Bso31I GGTCTC 1 cut(s) 509
Bsp13I TCCGGA 1 cut(s) 76
Bsp143I GATC 2 cut(s) 189, 447
BspACI CCGC 1 cut(s) 353
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 3 cut(s) 237, 349, 358
BspEI TCCGGA 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 63, 75
BspT107I GGYRCC 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 509
BsrFI RCCGGY 2 cut(s) 50, 70
BsrI ACTGG 2 cut(s) 65, 142
BssAI RCCGGY 2 cut(s) 50, 70
BssECI CCNNGG 2 cut(s) 87, 558
BssMI GATC 2 cut(s) 189, 447
BssNI GRCGYC 1 cut(s) 62
BssT1I CCWWGG 2 cut(s) 87, 558
Bst4CI ACNGT 2 cut(s) 181, 298
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 52, 72
BstDEI CTNAG 4 cut(s) 24, 224, 357, 366
BstF5I GGATG 2 cut(s) 14, 346
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 2 cut(s) 192, 450
BstMAI GTCTC 5 cut(s) 74, 104, 225, 389, 509
BstMBI GATC 2 cut(s) 189, 447
BstMWI GCNNNNNNNGC 3 cut(s) 350, 380, 389
BstV1I GCAGC 2 cut(s) 370, 536
BstV2I GAAGAC 1 cut(s) 281
Bsu36I CCTNAGG 1 cut(s) 24
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 2 cut(s) 14, 346
BtsIMutI CAGTG 2 cut(s) 72, 363
Cac8I GCNNGC 2 cut(s) 52, 72
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 1 cut(s) 64
Cfr10I RCCGGY 2 cut(s) 50, 70
CviAII CATG 1 cut(s) 451
CviJI RGCY 9 cut(s) 22, 50, 74, 86, 304, 356, 383, 404, 545
CviKI_1 RGCY 9 cut(s) 22, 50, 74, 86, 304, 356, 383, 404, 545
DdeI CTNAG 4 cut(s) 24, 224, 357, 366
DinI GGCGCC 1 cut(s) 63
DpnI GATC 2 cut(s) 191, 449
DpnII GATC 2 cut(s) 189, 447
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco130I CCWWGG 2 cut(s) 87, 558
Eco31I GGTCTC 1 cut(s) 509
Eco57I CTGAAG 2 cut(s) 495, 567
Eco81I CCTNAGG 1 cut(s) 24
EcoT14I CCWWGG 2 cut(s) 87, 558
EgeI GGCGCC 1 cut(s) 63
EheI GGCGCC 1 cut(s) 63
ErhI CCWWGG 2 cut(s) 87, 558
Esp3I CGTCTC 2 cut(s) 74, 104
FaeI CATG 1 cut(s) 454
FaiI YATR 2 cut(s) 452, 571
FatI CATG 1 cut(s) 450
Fnu4HI GCNGC 3 cut(s) 354, 384, 525
FokI GGATG 2 cut(s) 21, 353
Fsp4HI GCNGC 3 cut(s) 354, 384, 525
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 63
GluI GCNGC 3 cut(s) 354, 384, 525
HaeII RGCGCY 1 cut(s) 65
HaeIII GGCC 1 cut(s) 86
HapII CCGG 4 cut(s) 51, 71, 77, 416
HhaI GCGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 1 cut(s) 454
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HinfI GANTC 2 cut(s) 146, 359
HpaII CCGG 4 cut(s) 51, 71, 77, 416
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 3 cut(s) 151, 292, 502
Hpy188III TCNNGA 4 cut(s) 77, 109, 238, 308
Hpy8I GTNNAC 1 cut(s) 363
HpyAV CCTTC 7 cut(s) 34, 109, 115, 158, 242, 247, 523
HpyCH4III ACNGT 2 cut(s) 181, 298
HpyCH4V TGCA 3 cut(s) 14, 386, 488
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 380, 389
HpyF3I CTNAG 4 cut(s) 24, 224, 357, 366
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 1 cut(s) 454
HspAI GCGC 1 cut(s) 62
KasI GGCGCC 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 76
KroI GCCGGC 2 cut(s) 50, 70
KroNI GCCGGC 2 cut(s) 52, 72
Kzo9I GATC 2 cut(s) 189, 447
LmnI GCTCC 2 cut(s) 79, 349
LpnPI CCDG 9 cut(s) 64, 78, 84, 90, 123, 251, 336, 402, 429
Lsp1109I GCAGC 2 cut(s) 370, 536
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 133
MalI GATC 2 cut(s) 191, 449
MboI GATC 2 cut(s) 189, 447
MfeI CAATTG 1 cut(s) 375
MluCI AATT 7 cut(s) 229, 315, 327, 375, 426, 468, 496
Mly113I GGCGCC 1 cut(s) 62
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 5 cut(s) 37, 52, 304, 315, 361
MroI TCCGGA 1 cut(s) 76
MroNI GCCGGC 2 cut(s) 50, 70
MspI CCGG 4 cut(s) 51, 71, 77, 416
MunI CAATTG 1 cut(s) 375
MwoI GCNNNNNNNGC 3 cut(s) 350, 380, 389
NaeI GCCGGC 2 cut(s) 52, 72
NarI GGCGCC 1 cut(s) 62
NdeII GATC 2 cut(s) 189, 447
NgoMIV GCCGGC 2 cut(s) 50, 70
NlaIII CATG 1 cut(s) 454
NlaIV GGNNCC 2 cut(s) 63, 75
NmuCI GTSAC 1 cut(s) 133
PdiI GCCGGC 2 cut(s) 52, 72
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 3 cut(s) 355, 385, 526
PleI GAGTC 1 cut(s) 367
PluTI GGCGCC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 367
PspN4I GGNNCC 2 cut(s) 63, 75
PstNI CAGNNNCTG 1 cut(s) 296
SatI GCNGC 3 cut(s) 354, 384, 525
Sau3AI GATC 2 cut(s) 189, 447
SchI GAGTC 1 cut(s) 368
SetI ASST 6 cut(s) 30, 48, 169, 372, 385, 547
SfaNI GCATC 1 cut(s) 331
SfoI GGCGCC 1 cut(s) 63
Sse9I AATT 7 cut(s) 229, 315, 327, 375, 426, 468, 496
SsiI CCGC 1 cut(s) 353
SspDI GGCGCC 1 cut(s) 61
SspMI CTAG 1 cut(s) 308
StyI CCWWGG 2 cut(s) 87, 558
TaaI ACNGT 2 cut(s) 181, 298
TaqI TCGA 1 cut(s) 108
TaqII GACCGA 1 cut(s) 533
TasI AATT 7 cut(s) 229, 315, 327, 375, 426, 468, 496
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 1 cut(s) 146
TscAI CASTG 2 cut(s) 72, 370
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 383, 524
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 159, 219, 258
TspRI CASTG 2 cut(s) 72, 370
XapI RAATTY 1 cut(s) 496
XbaI TCTAGA 1 cut(s) 307
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.