Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016246

Physical Location & Seq

Genomic Coordinates Forward (+)

32248860 .. 32252663

Gene Structure 3804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG289900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGCGGATGTGCAACGAAGCCTAAGGTGTCAAAGGCCAAGGAAGCCGGCGGGGAGGTGCCAGTGCCGGCTCCGGAGACAGCCAAGGAAGAAGCTGTCGTGATCGAGTCGAAGGAGAAGGAGGTAGTTGTGATTGGTGATGAAGCTGAGAAGAAGATAGAAGGTGATGATTCAGTCAAGGAGATCGTTGATGATGAAGATAAACGCAAGTCTCTCAGCAATTTGTTCCAGAGTGAAGAAGGGAAGGACTCGACAGAAAAAGAGAAAACAACAGAAGTATCAGAAACTGAAAAGCCTCTAGAGGAAAATACCCCTGACATTGTTGTTGTTGATGCTCCAAAGACAGTCGAGTCAGCTGAGGTAGTAATTGAAGCTGCACCAGCAGAGACAGAAGCCAAAGAAGCTTCAGAGGAAAAAATCACTGAAGAAGTGGTTGAAAAGATCACAGAAGAAGTCAAGGAAATTGCTGAAGAGAACGTTGGAAAAGAAAAATCCGGAGGACAAAAAGAGACCGAAGCAGCGAAGGAAGAAAAAGTGGCTGAAGAGAAACCTAAGGAAGCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.32

Weight (kDa)

4.44

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016246)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23630
malus_domestica	MD15G1341200.v1.1
prunus_persica	Prupe.6G162300_v2.0.a1 Prupe.6G162300_v2.0.a1
pyrus_communis	pycom01g02920
rosa_chinensis	RchiOBHm_Chr2g0119231
rosa_laevigata	RLG00000018457
rosa_multiflora	Rmu_sc0004760.1_g000013
rosa_roxburghii	Rroxscaffold_2G00124420
rosa_rugosa	Rorug02G0221100
rosa_samantha	Rh2AG279100 Rh2BG289900 Rh2DG285000 Rh2DG304000
rosa_wichuraiana	Rw2G022190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
AccB1I	GGYRCC	1 cut(s)	58
AccIII	TCCGGA	2 cut(s)	73, 494
AciI	CCGC	2 cut(s)	6, 51
AclI	AACGTT	1 cut(s)	477
AcuI	CTGAAG	4 cut(s)	390, 444, 489, 561
AgsI	TTSAA	2 cut(s)	371, 437
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	5 cut(s)	95, 146, 356, 374, 404
AluI	AGCT	5 cut(s)	95, 146, 356, 374, 404
Alw26I	GTCTC	4 cut(s)	71, 216, 380, 503
AlwNI	CAGNNNCTG	1 cut(s)	287
Aor13HI	TCCGGA	2 cut(s)	73, 494
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	374, 518
AsuHPI	GGTGA	2 cut(s)	149, 176
AxyI	CCTNAGG	2 cut(s)	24, 552
BaeI	ACNNNNGTAYC	2 cut(s)	261, 294
BanI	GGYRCC	1 cut(s)	58
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	361, 530
BcoDI	GTCTC	4 cut(s)	71, 216, 380, 503
BfaI	CTAG	1 cut(s)	299
BisI	GCNGC	2 cut(s)	375, 519
BlsI	GCNGC	2 cut(s)	376, 520
BmiI	GGNNCC	2 cut(s)	60, 72
BmsI	GCATC	1 cut(s)	322
Bpu10I	CCTNAGC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	2 cut(s)	39, 84
BsaWI	WCCGGW	2 cut(s)	73, 494
Bse118I	RCCGGY	2 cut(s)	47, 67
Bse1I	ACTGG	1 cut(s)	62
Bse21I	CCTNAGG	2 cut(s)	24, 552
BseAI	TCCGGA	2 cut(s)	73, 494
BseDI	CCNNGG	2 cut(s)	39, 84
BseGI	GGATG	1 cut(s)	14
BseMII	CTCAG	3 cut(s)	138, 229, 348
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	2 cut(s)	361, 530
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	58
BsiSI	CCGG	4 cut(s)	48, 68, 74, 495
BsmAI	GTCTC	4 cut(s)	71, 216, 380, 503
BsnI	GGCC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	503
Bsp13I	TCCGGA	2 cut(s)	73, 494
Bsp143I	GATC	3 cut(s)	102, 183, 441
BspACI	CCGC	2 cut(s)	6, 51
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	3 cut(s)	139, 228, 349
BspEI	TCCGGA	2 cut(s)	73, 494
BspLI	GGNNCC	2 cut(s)	60, 72
BspT107I	GGYRCC	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	503
BsrFI	RCCGGY	2 cut(s)	47, 67
BsrI	ACTGG	1 cut(s)	62
BssAI	RCCGGY	2 cut(s)	47, 67
BssECI	CCNNGG	2 cut(s)	39, 84
BssMI	GATC	3 cut(s)	102, 183, 441
BssT1I	CCWWGG	2 cut(s)	39, 84
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	465, 537
BstC8I	GCNNGC	2 cut(s)	49, 69
BstDEI	CTNAG	5 cut(s)	24, 147, 215, 357, 552
BstF5I	GGATG	1 cut(s)	14
BstKTI	GATC	3 cut(s)	105, 186, 444
BstMAI	GTCTC	4 cut(s)	71, 216, 380, 503
BstMBI	GATC	3 cut(s)	102, 183, 441
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 380, 401
BstV1I	GCAGC	2 cut(s)	361, 530
Bsu36I	CCTNAGG	2 cut(s)	24, 552
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	14
BtsIMutI	CAGTG	2 cut(s)	69, 420
Cac8I	GCNNGC	2 cut(s)	49, 69
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr10I	RCCGGY	2 cut(s)	47, 67
DdeI	CTNAG	5 cut(s)	24, 147, 215, 357, 552
DpnI	GATC	3 cut(s)	104, 185, 443
DpnII	GATC	3 cut(s)	102, 183, 441
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
Eam1104I	CTCTTC	2 cut(s)	465, 537
EarI	CTCTTC	2 cut(s)	465, 537
EciI	GGCGGA	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	39, 84
Eco31I	GGTCTC	1 cut(s)	503
Eco57I	CTGAAG	4 cut(s)	390, 444, 489, 561
Eco81I	CCTNAGG	2 cut(s)	24, 552
EcoT14I	CCWWGG	2 cut(s)	39, 84
ErhI	CCWWGG	2 cut(s)	39, 84
FaiI	YATR	1 cut(s)	565
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	375, 519
FokI	GGATG	1 cut(s)	21
Fsp4HI	GCNGC	2 cut(s)	375, 519
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	2 cut(s)	375, 519
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	4 cut(s)	48, 68, 74, 495
HindIII	AAGCTT	1 cut(s)	402
HinfI	GANTC	4 cut(s)	107, 170, 248, 350
HpaII	CCGG	4 cut(s)	48, 68, 74, 495
HphI	GGTGA	2 cut(s)	149, 176
Hpy188I	TCNGA	2 cut(s)	283, 409
Hpy188III	TCNNGA	5 cut(s)	74, 100, 229, 299, 495
HpyAV	CCTTC	6 cut(s)	106, 112, 155, 233, 238, 517
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	2 cut(s)	14, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 380, 401
HpyF3I	CTNAG	5 cut(s)	24, 147, 215, 357, 552
HpySE526I	ACGT	1 cut(s)	477
Kpn2I	TCCGGA	2 cut(s)	73, 494
KroI	GCCGGC	2 cut(s)	47, 67
KroNI	GCCGGC	2 cut(s)	49, 69
Kzo9I	GATC	3 cut(s)	102, 183, 441
LmnI	GCTCC	2 cut(s)	76, 340
LpnPI	CCDG	8 cut(s)	61, 75, 81, 87, 242, 327, 393, 508
Lsp1109I	GCAGC	2 cut(s)	361, 530
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	477
MalI	GATC	3 cut(s)	104, 185, 443
MboI	GATC	3 cut(s)	102, 183, 441
MluCI	AATT	3 cut(s)	220, 366, 462
MlyI	GAGTC	3 cut(s)	116, 242, 359
MmeI	TCCRAC	1 cut(s)	460
MnlI	CCTC	7 cut(s)	49, 115, 295, 306, 352, 403, 491
MroI	TCCGGA	2 cut(s)	73, 494
MroNI	GCCGGC	2 cut(s)	47, 67
MspA1I	CMGCKG	1 cut(s)	356
MspI	CCGG	4 cut(s)	48, 68, 74, 495
MwoI	GCNNNNNNNGC	3 cut(s)	44, 380, 401
NaeI	GCCGGC	2 cut(s)	49, 69
NdeII	GATC	3 cut(s)	102, 183, 441
NgoMIV	GCCGGC	2 cut(s)	47, 67
NlaIV	GGNNCC	2 cut(s)	60, 72
PdiI	GCCGGC	2 cut(s)	49, 69
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	2 cut(s)	376, 520
PleI	GAGTC	3 cut(s)	115, 242, 358
PpsI	GAGTC	3 cut(s)	115, 242, 358
Psp1406I	AACGTT	1 cut(s)	477
PspN4I	GGNNCC	2 cut(s)	60, 72
PstNI	CAGNNNCTG	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	356
SatI	GCNGC	2 cut(s)	375, 519
Sau3AI	GATC	3 cut(s)	102, 183, 441
SchI	GAGTC	3 cut(s)	116, 242, 359
SfaNI	GCATC	1 cut(s)	322
Sse9I	AATT	3 cut(s)	220, 366, 462
SsiI	CCGC	2 cut(s)	6, 51
SspMI	CTAG	1 cut(s)	299
StyI	CCWWGG	2 cut(s)	39, 84
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	4 cut(s)	105, 110, 251, 348
TaqII	GACCGA	1 cut(s)	527
TasI	AATT	3 cut(s)	220, 366, 462
TfiI	GAWTC	1 cut(s)	170
TscAI	CASTG	2 cut(s)	69, 427
TseI	GCWGC	2 cut(s)	374, 518
TspDTI	ATGAA	2 cut(s)	156, 210
TspRI	CASTG	2 cut(s)	69, 427
XbaI	TCTAGA	1 cut(s)	298
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.