Prupe.6G162300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016246
Physical Location & Seq
Reverse (-)
15301313 .. 15305769
4457 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G162300.1

Sequence Viewer

Length: 594 bp
ATGGGAGGGTGTGCAACAAAGCCGAAGGTGTTGAAGGCCGAGGGCGCAAGCGAAGCGCCAGAGCCGGCACCAGAGGCGGCAGCCAAGGAAGAAGTAGTGGCGGCGGTACCAGTTGATGATCAGGCAAAGGAGAAGGATGTGGTAATAGTTGCTGCTGCTGATGATGAAGATGAGAAGAAGAAGAAGAAGATAGAGTTGGCTCCTGAGGAAGAGGGTGGCGGTGATGATAAAGTCAAGGAGATCGTTGATGATGATGAACAAGGAAGTAAACACCGCTCTCTCAGTCTTTTGTTCAAGCAGAATGAAGAAGGAAAGGAGGAGGCAACAGAAACAGAGAAGCAGCCAGAACCATCGGAGACTGAAAAGCCTCCGGAGGAACAGAAGGCTGAGCCTGCAGAGATAGCCATTGAAGATGCACCAGAACCAGAGACCAAAACGAAACAACCATCTGAAGAAAAAGTTACAGAAGAAGTGAAGGAAGTTGCTGAAGCAGCAACGGAGGAAGTGAAAGGAACCGTCACAGAAAATAGTACAGAAGAAGGAAAAGATGTTGAAGTGAAGGGAGGCGCTGCTGAAGAGCATGTCAAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.15

Weight (kDa)

4.4

Isoelectric Point (pI)

67.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016246)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23630
malus_domestica MD15G1341200.v1.1
prunus_persica Prupe.6G162300_v2.0.a1 Prupe.6G162300_v2.0.a1
pyrus_communis pycom01g02920
rosa_chinensis RchiOBHm_Chr2g0119231
rosa_laevigata RLG00000018457
rosa_multiflora Rmu_sc0004760.1_g000013
rosa_roxburghii Rroxscaffold_2G00124420
rosa_rugosa Rorug02G0221100
rosa_samantha Rh2AG279100 Rh2BG289900 Rh2DG285000 Rh2DG304000
rosa_wichuraiana Rw2G022190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 106
AccB1I GGYRCC 2 cut(s) 67, 106
AccBSI CCGCTC 1 cut(s) 276
AccIII TCCGGA 1 cut(s) 370
AciI CCGC 5 cut(s) 77, 101, 104, 219, 274
AcuI CTGAAG 3 cut(s) 471, 507, 594
AfaI GTAC 2 cut(s) 108, 532
AgsI TTSAA 4 cut(s) 34, 295, 410, 554
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
Alw26I GTCTC 2 cut(s) 350, 422
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 6 cut(s) 80, 152, 155, 340, 491, 569
Asp718I GGTACC 1 cut(s) 106
AspLEI GCGC 3 cut(s) 47, 58, 569
AsuHPI GGTGA 1 cut(s) 233
AxyI CCTNAGG 1 cut(s) 204
BanI GGYRCC 2 cut(s) 67, 106
BbvI GCAGC 6 cut(s) 92, 139, 142, 352, 503, 556
BccI CCATC 2 cut(s) 358, 454
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 350, 422
BfmI CTRYAG 1 cut(s) 393
BfoI RGCGCY 2 cut(s) 59, 570
BisI GCNGC 8 cut(s) 78, 81, 102, 153, 156, 341, 492, 570
BlpI GCTNAGC 1 cut(s) 387
BlsI GCNGC 8 cut(s) 79, 82, 103, 154, 157, 342, 493, 571
BmiI GGNNCC 4 cut(s) 69, 108, 201, 514
BmsI GCATC 1 cut(s) 403
Bpu1102I GCTNAGC 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 39, 84
BsaWI WCCGGW 1 cut(s) 370
Bse118I RCCGGY 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 110
Bse21I CCTNAGG 1 cut(s) 204
BseAI TCCGGA 1 cut(s) 370
BseDI CCNNGG 2 cut(s) 39, 84
BseGI GGATG 1 cut(s) 142
BseMII CTCAG 3 cut(s) 195, 295, 378
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 6 cut(s) 92, 139, 142, 352, 503, 556
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 2 cut(s) 67, 106
BsiSI CCGG 2 cut(s) 65, 371
BsmAI GTCTC 2 cut(s) 350, 422
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 422
Bsp13I TCCGGA 1 cut(s) 370
Bsp143I GATC 2 cut(s) 118, 240
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 5 cut(s) 77, 101, 104, 219, 274
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 3 cut(s) 196, 294, 379
BspEI TCCGGA 1 cut(s) 370
BspLI GGNNCC 4 cut(s) 69, 108, 201, 514
BspMAI CTGCAG 1 cut(s) 397
BspQI GCTCTTC 1 cut(s) 570
BspT107I GGYRCC 2 cut(s) 67, 106
BspTNI GGTCTC 1 cut(s) 422
BsrBI CCGCTC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 64
BsrI ACTGG 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 39, 84
BssMI GATC 2 cut(s) 118, 240
BssT1I CCWWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 517
Bst6I CTCTTC 2 cut(s) 204, 570
BstC8I GCNNGC 3 cut(s) 49, 66, 393
BstDEI CTNAG 3 cut(s) 204, 281, 387
BstF5I GGATG 1 cut(s) 142
BstH2I RGCGCY 2 cut(s) 59, 570
BstHHI GCGC 3 cut(s) 47, 58, 569
BstKTI GATC 2 cut(s) 121, 243
BstMAI GTCTC 2 cut(s) 350, 422
BstMBI GATC 2 cut(s) 118, 240
BstMWI GCNNNNNNNGC 6 cut(s) 44, 53, 74, 392, 401, 491
BstNSI RCATGY 1 cut(s) 584
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 6 cut(s) 92, 139, 142, 352, 503, 556
Bsu36I CCTNAGG 1 cut(s) 204
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 142
Cac8I GCNNGC 3 cut(s) 49, 66, 393
CfoI GCGC 3 cut(s) 47, 58, 569
Cfr10I RCCGGY 1 cut(s) 64
Csp6I GTAC 2 cut(s) 107, 531
CviAII CATG 1 cut(s) 581
CviQI GTAC 2 cut(s) 107, 531
DdeI CTNAG 3 cut(s) 204, 281, 387
DpnI GATC 2 cut(s) 120, 242
DpnII GATC 2 cut(s) 118, 240
Eam1104I CTCTTC 2 cut(s) 204, 570
EarI CTCTTC 2 cut(s) 204, 570
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 422
Eco57I CTGAAG 3 cut(s) 471, 507, 594
Eco81I CCTNAGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 584
FaiI YATR 2 cut(s) 582, 592
FatI CATG 1 cut(s) 580
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 8 cut(s) 78, 81, 102, 153, 156, 341, 492, 570
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 8 cut(s) 78, 81, 102, 153, 156, 341, 492, 570
GlaI GCGC 3 cut(s) 46, 57, 568
GluI GCNGC 8 cut(s) 78, 81, 102, 153, 156, 341, 492, 570
HaeII RGCGCY 2 cut(s) 59, 570
HaeIII GGCC 1 cut(s) 38
HapII CCGG 2 cut(s) 65, 371
HhaI GCGC 3 cut(s) 47, 58, 569
Hin1II CATG 1 cut(s) 584
Hin6I GCGC 3 cut(s) 45, 56, 567
HinP1I GCGC 3 cut(s) 45, 56, 567
HpaII CCGG 2 cut(s) 65, 371
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 2 cut(s) 355, 451
Hpy188III TCNNGA 2 cut(s) 203, 371
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 8 cut(s) 19, 28, 127, 302, 376, 469, 533, 553
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4V TGCA 3 cut(s) 14, 395, 416
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 53, 74, 392, 401, 491
HpyF3I CTNAG 3 cut(s) 204, 281, 387
Hsp92II CATG 1 cut(s) 584
HspAI GCGC 3 cut(s) 45, 56, 567
Kpn2I TCCGGA 1 cut(s) 370
KpnI GGTACC 1 cut(s) 110
KroI GCCGGC 1 cut(s) 64
KroNI GCCGGC 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 2 cut(s) 118, 240
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 6 cut(s) 92, 139, 142, 352, 503, 556
LweI GCATC 1 cut(s) 403
MaeIII GTNAC 2 cut(s) 460, 517
MalI GATC 2 cut(s) 120, 242
MbiI CCGCTC 1 cut(s) 276
MboI GATC 2 cut(s) 118, 240
MroI TCCGGA 1 cut(s) 370
MroNI GCCGGC 1 cut(s) 64
MspI CCGG 2 cut(s) 65, 371
MwoI GCNNNNNNNGC 6 cut(s) 44, 53, 74, 392, 401, 491
NaeI GCCGGC 1 cut(s) 66
NdeII GATC 2 cut(s) 118, 240
NgoMIV GCCGGC 1 cut(s) 64
NlaIII CATG 1 cut(s) 584
NlaIV GGNNCC 4 cut(s) 69, 108, 201, 514
NmeAIII GCCGAG 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 517
NspI RCATGY 1 cut(s) 584
PciSI GCTCTTC 1 cut(s) 570
PdiI GCCGGC 1 cut(s) 66
PkrI GCNGC 8 cut(s) 79, 82, 103, 154, 157, 342, 493, 571
PspN4I GGNNCC 4 cut(s) 69, 108, 201, 514
PstI CTGCAG 1 cut(s) 397
RsaI GTAC 2 cut(s) 108, 532
RsaNI GTAC 2 cut(s) 107, 531
SapI GCTCTTC 1 cut(s) 570
SatI GCNGC 8 cut(s) 78, 81, 102, 153, 156, 341, 492, 570
Sau3AI GATC 2 cut(s) 118, 240
SetI ASST 1 cut(s) 30
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 1 cut(s) 393
SsiI CCGC 5 cut(s) 77, 101, 104, 219, 274
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 517
TatI WGTACW 1 cut(s) 530
TauI GCSGC 2 cut(s) 80, 104
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 6 cut(s) 80, 152, 155, 340, 491, 569
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 3 cut(s) 180, 270, 318
TspGWI ACGGA 1 cut(s) 512
XceI RCATGY 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.