Rmu_sc0004760.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004760.1
OG0016246
Physical Location & Seq
Reverse (-)
67137 .. 69679
2543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004760.1_g000013.1.cds

Sequence Viewer

Length: 567 bp
atgggcggatgtgcaacgaagcctaaggtgtcaaaggccaaggaagccggcggggaggtgccagtgccggctccggagacagccaaggaagaagcagtcgtgatcgagtcaaaggagaaggaggtagttgtgattggttatgaagctgagaagaagatagaaggtgatgattcagtcaaggagatcgttgatgatgaagataaacgcaagtctctcagcaatttgttccagagtgaagaagggaaggactcgacagaaaaagagaaaacaacagaagtatcagaaactgaaaagcctctagaggaaaatacccctgacattgttgttgttgatattccaaagacagccgagtcagctgaggtagtaattgaagctgcaccagcagagacagaagccaaagaagcttcagaggaaaaaatcactgaagaagtggttgaaaagatcacagaagaagtcaaggaaattgctgaagagaacgttggaaaagaaaaatccggaggacaaaaagagaccgaagcagcgaaggaagaaaaagtggctgaacagaaacctaaggaagcagtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.38

Weight (kDa)

4.48

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016246)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23630
malus_domestica MD15G1341200.v1.1
prunus_persica Prupe.6G162300_v2.0.a1 Prupe.6G162300_v2.0.a1
pyrus_communis pycom01g02920
rosa_chinensis RchiOBHm_Chr2g0119231
rosa_laevigata RLG00000018457
rosa_multiflora Rmu_sc0004760.1_g000013
rosa_roxburghii Rroxscaffold_2G00124420
rosa_rugosa Rorug02G0221100
rosa_samantha Rh2AG279100 Rh2BG289900 Rh2DG285000 Rh2DG304000
rosa_wichuraiana Rw2G022190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 349
AccB1I GGYRCC 1 cut(s) 58
AccIII TCCGGA 2 cut(s) 73, 494
AciI CCGC 2 cut(s) 6, 51
AclI AACGTT 1 cut(s) 477
AcuI CTGAAG 3 cut(s) 390, 444, 489
AgsI TTSAA 2 cut(s) 371, 437
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
AluBI AGCT 4 cut(s) 146, 356, 374, 404
AluI AGCT 4 cut(s) 146, 356, 374, 404
Alw26I GTCTC 4 cut(s) 71, 216, 380, 503
AlwNI CAGNNNCTG 1 cut(s) 287
Aor13HI TCCGGA 2 cut(s) 73, 494
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 374, 518
AsuHPI GGTGA 1 cut(s) 176
AxyI CCTNAGG 2 cut(s) 24, 552
BaeI ACNNNNGTAYC 2 cut(s) 261, 294
BanI GGYRCC 1 cut(s) 58
BbvCI CCTCAGC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 361, 530
BcoDI GTCTC 4 cut(s) 71, 216, 380, 503
BfaI CTAG 1 cut(s) 299
BisI GCNGC 2 cut(s) 375, 519
BlsI GCNGC 2 cut(s) 376, 520
BmiI GGNNCC 2 cut(s) 60, 72
Bpu10I CCTNAGC 1 cut(s) 357
BsaI GGTCTC 1 cut(s) 503
BsaJI CCNNGG 2 cut(s) 39, 84
BsaWI WCCGGW 2 cut(s) 73, 494
Bse118I RCCGGY 2 cut(s) 47, 67
Bse1I ACTGG 1 cut(s) 62
Bse21I CCTNAGG 2 cut(s) 24, 552
BseAI TCCGGA 2 cut(s) 73, 494
BseDI CCNNGG 2 cut(s) 39, 84
BseGI GGATG 1 cut(s) 14
BseMII CTCAG 3 cut(s) 138, 229, 348
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 2 cut(s) 361, 530
BsgI GTGCAG 1 cut(s) 360
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 58
BsiSI CCGG 4 cut(s) 48, 68, 74, 495
BsmAI GTCTC 4 cut(s) 71, 216, 380, 503
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 503
Bsp13I TCCGGA 2 cut(s) 73, 494
Bsp143I GATC 3 cut(s) 102, 183, 441
BspACI CCGC 2 cut(s) 6, 51
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 3 cut(s) 139, 228, 349
BspEI TCCGGA 2 cut(s) 73, 494
BspLI GGNNCC 2 cut(s) 60, 72
BspT107I GGYRCC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 503
BsrFI RCCGGY 2 cut(s) 47, 67
BsrI ACTGG 1 cut(s) 62
BssAI RCCGGY 2 cut(s) 47, 67
BssECI CCNNGG 2 cut(s) 39, 84
BssMI GATC 3 cut(s) 102, 183, 441
BssT1I CCWWGG 2 cut(s) 39, 84
Bst6I CTCTTC 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 49, 69
BstDEI CTNAG 5 cut(s) 24, 147, 215, 357, 552
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 3 cut(s) 105, 186, 444
BstMAI GTCTC 4 cut(s) 71, 216, 380, 503
BstMBI GATC 3 cut(s) 102, 183, 441
BstMWI GCNNNNNNNGC 4 cut(s) 44, 353, 380, 401
BstV1I GCAGC 2 cut(s) 361, 530
Bsu36I CCTNAGG 2 cut(s) 24, 552
BsuRI GGCC 1 cut(s) 38
BtsCI GGATG 1 cut(s) 14
BtsIMutI CAGTG 2 cut(s) 69, 420
Cac8I GCNNGC 2 cut(s) 49, 69
CaiI CAGNNNCTG 1 cut(s) 287
Cfr10I RCCGGY 2 cut(s) 47, 67
DdeI CTNAG 5 cut(s) 24, 147, 215, 357, 552
DpnI GATC 3 cut(s) 104, 185, 443
DpnII GATC 3 cut(s) 102, 183, 441
DrdI GACNNNNNNGTC 1 cut(s) 349
DseDI GACNNNNNNGTC 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 465
EarI CTCTTC 1 cut(s) 465
EciI GGCGGA 1 cut(s) 21
Eco130I CCWWGG 2 cut(s) 39, 84
Eco31I GGTCTC 1 cut(s) 503
Eco57I CTGAAG 3 cut(s) 390, 444, 489
Eco81I CCTNAGG 2 cut(s) 24, 552
EcoT14I CCWWGG 2 cut(s) 39, 84
ErhI CCWWGG 2 cut(s) 39, 84
FaiI YATR 2 cut(s) 141, 565
FauI CCCGC 1 cut(s) 44
Fnu4HI GCNGC 2 cut(s) 375, 519
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 2 cut(s) 375, 519
FspBI CTAG 1 cut(s) 299
GluI GCNGC 2 cut(s) 375, 519
HaeIII GGCC 1 cut(s) 38
HapII CCGG 4 cut(s) 48, 68, 74, 495
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 4 cut(s) 107, 170, 248, 350
HpaII CCGG 4 cut(s) 48, 68, 74, 495
HphI GGTGA 1 cut(s) 176
Hpy188I TCNGA 2 cut(s) 283, 409
Hpy188III TCNNGA 5 cut(s) 74, 100, 229, 299, 495
HpyAV CCTTC 5 cut(s) 112, 155, 233, 238, 517
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 2 cut(s) 14, 377
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 353, 380, 401
HpyF3I CTNAG 5 cut(s) 24, 147, 215, 357, 552
HpySE526I ACGT 1 cut(s) 477
Kpn2I TCCGGA 2 cut(s) 73, 494
KroI GCCGGC 2 cut(s) 47, 67
KroNI GCCGGC 2 cut(s) 49, 69
Kzo9I GATC 3 cut(s) 102, 183, 441
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 8 cut(s) 61, 75, 81, 87, 242, 327, 393, 508
Lsp1109I GCAGC 2 cut(s) 361, 530
MaeI CTAG 1 cut(s) 299
MaeII ACGT 1 cut(s) 477
MalI GATC 3 cut(s) 104, 185, 443
MboI GATC 3 cut(s) 102, 183, 441
MboII GAAGA 9 cut(s) 101, 163, 166, 209, 248, 437, 461, 482, 539
MluCI AATT 3 cut(s) 220, 366, 462
MlyI GAGTC 3 cut(s) 116, 242, 359
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 7 cut(s) 49, 115, 295, 306, 352, 403, 491
MroI TCCGGA 2 cut(s) 73, 494
MroNI GCCGGC 2 cut(s) 47, 67
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 4 cut(s) 48, 68, 74, 495
MwoI GCNNNNNNNGC 4 cut(s) 44, 353, 380, 401
NaeI GCCGGC 2 cut(s) 49, 69
NdeII GATC 3 cut(s) 102, 183, 441
NgoMIV GCCGGC 2 cut(s) 47, 67
NlaIV GGNNCC 2 cut(s) 60, 72
NmeAIII GCCGAG 1 cut(s) 373
PdiI GCCGGC 2 cut(s) 49, 69
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 2 cut(s) 376, 520
PleI GAGTC 3 cut(s) 115, 242, 358
PpsI GAGTC 3 cut(s) 115, 242, 358
Psp1406I AACGTT 1 cut(s) 477
PspN4I GGNNCC 2 cut(s) 60, 72
PstNI CAGNNNCTG 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 356
SatI GCNGC 2 cut(s) 375, 519
Sau3AI GATC 3 cut(s) 102, 183, 441
SchI GAGTC 3 cut(s) 116, 242, 359
Sse9I AATT 3 cut(s) 220, 366, 462
SsiI CCGC 2 cut(s) 6, 51
SspMI CTAG 1 cut(s) 299
StyI CCWWGG 2 cut(s) 39, 84
TaiI ACGT 1 cut(s) 480
TaqI TCGA 2 cut(s) 105, 251
TaqII GACCGA 1 cut(s) 527
TasI AATT 3 cut(s) 220, 366, 462
TfiI GAWTC 1 cut(s) 170
TscAI CASTG 2 cut(s) 69, 427
TseI GCWGC 2 cut(s) 374, 518
TspDTI ATGAA 2 cut(s) 156, 210
TspRI CASTG 2 cut(s) 69, 427
XbaI TCTAGA 1 cut(s) 298
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.