MD15G1341200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016246
Physical Location & Seq
Forward (+)
38935762 .. 38944885
9124 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1341200.v1.1.491

Sequence Viewer

Length: 576 bp
ATGGGAGGGTGTGCAACGAAGCCAAAGGTGTCAAAGGGGGAGGCGGCGAGCGAGGCGCCAGTACCAGCTCCAGAGCCTGCGGCCAAGGAAGATCAACCAGCCGCGGTGGCGGCGAGCGAGGCGCCAGTGCCAGCTCCAGAGCCTGCAGCCAAGGAAGATCAAGCGATAGCCGCAGCAGCGGTTGATGATCAAGAAAAGGAGAAGGAGGTGGTGTTAGTTGCTGATAGCGATGAAGCTGAGAAGAAGATAGAAATAACTCCTGAGCCTGAGCCTGAGGAGGCTCAGGGTGGTGGTGATGATAAAGCCAAGGAGATCGTTGATGATGATGGACAAGGAAGTAAACGACGCTCTCTCAGTCTTTTGTTCAAGAATGTAGAAGGGAAGGAGGAGTCAACAGAACCAGAGAAGCAACTTGAACCCGAAAAGCCTCTCGAGGAAAAGACCCATCATGCTCCAACAGACATAGCAACAGAAGATGCATCAGCAGCATCAGAAAAAGTTGCGGGAGCCGTGACCGAAACTGCTGATCAAGCAACAAAGGAAGTGAAGGTGGCTGCTGCAGAAGAGGCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

19.83

Weight (kDa)

4.39

Isoelectric Point (pI)

61.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016246)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23630
malus_domestica MD15G1341200.v1.1
prunus_persica Prupe.6G162300_v2.0.a1 Prupe.6G162300_v2.0.a1
pyrus_communis pycom01g02920
rosa_chinensis RchiOBHm_Chr2g0119231
rosa_laevigata RLG00000018457
rosa_multiflora Rmu_sc0004760.1_g000013
rosa_roxburghii Rroxscaffold_2G00124420
rosa_rugosa Rorug02G0221100
rosa_samantha Rh2AG279100 Rh2BG289900 Rh2DG285000 Rh2DG304000
rosa_wichuraiana Rw2G022190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 55, 121
AccII CGCG 1 cut(s) 104
AciI CCGC 8 cut(s) 44, 80, 102, 104, 110, 171, 179, 503
AcoI YGGCCR 1 cut(s) 81
AcyI GRCGYC 2 cut(s) 56, 122
AfaI GTAC 1 cut(s) 63
AgsI TTSAA 2 cut(s) 367, 416
AluBI AGCT 3 cut(s) 68, 134, 236
AluI AGCT 3 cut(s) 68, 134, 236
AlwNI CAGNNNCTG 2 cut(s) 77, 143
Ama87I CYCGRG 1 cut(s) 431
AoxI GGCC 2 cut(s) 81, 567
ApeKI GCWGC 6 cut(s) 146, 173, 176, 485, 554, 557
AspLEI GCGC 2 cut(s) 58, 124
AsuHPI GGTGA 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 431
AxyI CCTNAGG 1 cut(s) 273
BanI GGYRCC 2 cut(s) 55, 121
BbvI GCAGC 6 cut(s) 158, 185, 188, 497, 541, 544
BccI CCATC 2 cut(s) 320, 453
BceAI ACGGC 1 cut(s) 494
BclI TGATCA 2 cut(s) 187, 526
BfmI CTRYAG 2 cut(s) 144, 558
BfoI RGCGCY 2 cut(s) 59, 125
BglI GCCNNNNNGGC 1 cut(s) 107
BmeT110I CYCGRG 1 cut(s) 431
BmiI GGNNCC 3 cut(s) 57, 123, 508
BmsI GCATC 3 cut(s) 466, 488, 497
BpmI CTGGAG 2 cut(s) 54, 120
Bpu10I CCTNAGC 3 cut(s) 261, 267, 282
BsaHI GRCGYC 2 cut(s) 56, 122
BsaJI CCNNGG 4 cut(s) 84, 102, 150, 306
BsaXI ACNNNNNCTCC 2 cut(s) 197, 227
Bse1I ACTGG 2 cut(s) 59, 125
Bse21I CCTNAGG 1 cut(s) 273
BseDI CCNNGG 4 cut(s) 84, 102, 150, 306
BseMII CTCAG 6 cut(s) 228, 252, 258, 264, 296, 367
BseNI ACTGG 2 cut(s) 59, 125
BseRI GAGGAG 2 cut(s) 290, 401
BseXI GCAGC 6 cut(s) 158, 185, 188, 497, 541, 544
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 2 cut(s) 83, 569
BshNI GGYRCC 2 cut(s) 55, 121
BsiHKCI CYCGRG 1 cut(s) 431
BsnI GGCC 2 cut(s) 83, 569
BsoBI CYCGRG 1 cut(s) 431
Bsp143I GATC 5 cut(s) 91, 157, 187, 312, 526
BspACI CCGC 8 cut(s) 44, 80, 102, 104, 110, 171, 179, 503
BspANI GGCC 2 cut(s) 83, 569
BspCNI CTCAG 6 cut(s) 229, 253, 259, 265, 295, 366
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 3 cut(s) 57, 123, 508
BspMAI CTGCAG 2 cut(s) 148, 562
BspT107I GGYRCC 2 cut(s) 55, 121
BsrI ACTGG 2 cut(s) 59, 125
BssECI CCNNGG 4 cut(s) 84, 102, 150, 306
BssMI GATC 5 cut(s) 91, 157, 187, 312, 526
BssNI GRCGYC 2 cut(s) 56, 122
BssT1I CCWWGG 3 cut(s) 84, 150, 306
Bst6I CTCTTC 1 cut(s) 558
BstACI GRCGYC 2 cut(s) 56, 122
BstC8I GCNNGC 5 cut(s) 49, 78, 115, 132, 144
BstDEI CTNAG 6 cut(s) 237, 261, 267, 273, 282, 353
BstDSI CCRYGG 1 cut(s) 102
BstFNI CGCG 1 cut(s) 104
BstH2I RGCGCY 2 cut(s) 59, 125
BstHHI GCGC 2 cut(s) 58, 124
BstKTI GATC 5 cut(s) 94, 160, 190, 315, 529
BstMBI GATC 5 cut(s) 91, 157, 187, 312, 526
BstMWI GCNNNNNNNGC 9 cut(s) 53, 107, 110, 119, 170, 176, 485, 530, 566
BstSFI CTRYAG 2 cut(s) 144, 558
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 6 cut(s) 158, 185, 188, 497, 541, 544
Bsu36I CCTNAGG 1 cut(s) 273
BsuRI GGCC 2 cut(s) 83, 569
BtgI CCRYGG 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 5 cut(s) 49, 78, 115, 132, 144
CaiI CAGNNNCTG 2 cut(s) 77, 143
CfoI GCGC 2 cut(s) 58, 124
Cfr42I CCGCGG 1 cut(s) 105
CseI GACGC 1 cut(s) 354
Csp6I GTAC 1 cut(s) 62
CviAII CATG 1 cut(s) 449
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 6 cut(s) 237, 261, 267, 273, 282, 353
DinI GGCGCC 2 cut(s) 57, 123
DpnI GATC 5 cut(s) 93, 159, 189, 314, 528
DpnII GATC 5 cut(s) 91, 157, 187, 312, 526
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco130I CCWWGG 3 cut(s) 84, 150, 306
Eco81I CCTNAGG 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 431
EcoT14I CCWWGG 3 cut(s) 84, 150, 306
EcoT22I ATGCAT 1 cut(s) 481
EgeI GGCGCC 2 cut(s) 57, 123
EheI GGCGCC 2 cut(s) 57, 123
ErhI CCWWGG 3 cut(s) 84, 150, 306
FaeI CATG 1 cut(s) 452
FaiI YATR 2 cut(s) 450, 464
FatI CATG 1 cut(s) 448
FauI CCCGC 1 cut(s) 496
FbaI TGATCA 2 cut(s) 187, 526
GlaI GCGC 2 cut(s) 57, 123
GsuI CTGGAG 2 cut(s) 54, 120
HaeII RGCGCY 2 cut(s) 59, 125
HaeIII GGCC 2 cut(s) 83, 569
HgaI GACGC 1 cut(s) 354
HhaI GCGC 2 cut(s) 58, 124
Hin1I GRCGYC 2 cut(s) 56, 122
Hin1II CATG 1 cut(s) 452
Hin6I GCGC 2 cut(s) 56, 122
HinP1I GCGC 2 cut(s) 56, 122
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HinfI GANTC 1 cut(s) 389
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 2 cut(s) 341, 393
Hpy188I TCNGA 1 cut(s) 493
Hpy188III TCNNGA 6 cut(s) 71, 137, 191, 260, 367, 431
Hpy8I GTNNAC 2 cut(s) 341, 393
Hpy99I CGWCG 1 cut(s) 348
HpyAV CCTTC 4 cut(s) 196, 371, 376, 541
HpyCH4V TGCA 4 cut(s) 14, 146, 479, 560
HpyF10VI GCNNNNNNNGC 9 cut(s) 53, 107, 110, 119, 170, 176, 485, 530, 566
HpyF3I CTNAG 6 cut(s) 237, 261, 267, 273, 282, 353
Hsp92I GRCGYC 2 cut(s) 56, 122
Hsp92II CATG 1 cut(s) 452
HspAI GCGC 2 cut(s) 56, 122
KasI GGCGCC 2 cut(s) 55, 121
Ksp22I TGATCA 2 cut(s) 187, 526
KspI CCGCGG 1 cut(s) 105
Kzo9I GATC 5 cut(s) 91, 157, 187, 312, 526
LmnI GCTCC 4 cut(s) 73, 139, 457, 506
Lsp1109I GCAGC 6 cut(s) 158, 185, 188, 497, 541, 544
LweI GCATC 3 cut(s) 466, 488, 497
MaeIII GTNAC 1 cut(s) 511
MalI GATC 5 cut(s) 93, 159, 189, 314, 528
MboI GATC 5 cut(s) 91, 157, 187, 312, 526
MboII GAAGA 6 cut(s) 101, 167, 253, 256, 485, 575
Mly113I GGCGCC 2 cut(s) 56, 122
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 479
Mph1103I ATGCAT 1 cut(s) 481
MspA1I CMGCKG 2 cut(s) 104, 179
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 9 cut(s) 53, 107, 110, 119, 170, 176, 485, 530, 566
NarI GGCGCC 2 cut(s) 56, 122
NdeII GATC 5 cut(s) 91, 157, 187, 312, 526
NlaIII CATG 1 cut(s) 452
NlaIV GGNNCC 3 cut(s) 57, 123, 508
NmuCI GTSAC 1 cut(s) 511
NsiI ATGCAT 1 cut(s) 481
PaeR7I CTCGAG 1 cut(s) 431
PleI GAGTC 1 cut(s) 397
PluTI GGCGCC 2 cut(s) 59, 125
PpsI GAGTC 1 cut(s) 397
PspN4I GGNNCC 3 cut(s) 57, 123, 508
PstI CTGCAG 2 cut(s) 148, 562
PstNI CAGNNNCTG 2 cut(s) 77, 143
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SacII CCGCGG 1 cut(s) 105
Sau3AI GATC 5 cut(s) 91, 157, 187, 312, 526
SchI GAGTC 1 cut(s) 398
SetI ASST 6 cut(s) 30, 70, 136, 210, 238, 552
SfaNI GCATC 3 cut(s) 466, 488, 497
SfcI CTRYAG 2 cut(s) 144, 558
SfoI GGCGCC 2 cut(s) 57, 123
Sfr274I CTCGAG 1 cut(s) 431
Sfr303I CCGCGG 1 cut(s) 105
SgrBI CCGCGG 1 cut(s) 105
SlaI CTCGAG 1 cut(s) 431
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
SsiI CCGC 8 cut(s) 44, 80, 102, 104, 110, 171, 179, 503
SspDI GGCGCC 2 cut(s) 55, 121
StyI CCWWGG 3 cut(s) 84, 150, 306
TaqI TCGA 1 cut(s) 432
TaqII GACCGA 1 cut(s) 530
TauI GCSGC 5 cut(s) 47, 83, 104, 113, 173
TscAI CASTG 1 cut(s) 132
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 6 cut(s) 146, 173, 176, 485, 554, 557
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 1 cut(s) 246
TspRI CASTG 1 cut(s) 132
XhoI CTCGAG 1 cut(s) 431
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.