pycom01g02920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0016246
Physical Location & Seq
Forward (+)
2376668 .. 2378209
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g02920.1

Sequence Viewer

Length: 1119 bp
ATGGGAGGGTGTGCGACGAAGCCAAAGGTGTCAAAGGGGGAGGTGGCCGGCGAGGTACCGGTGCTGGCTCCAGAGCCTACAGCCAAGGAAGATCAGCTGGCGGTGGTTGATGATAAGGCAAAGGAGAAGGAGGCGGTGTTACTCCTGAGCCTGAGCCTGAGCCTGAGGAGGCTTAGGGTGGTGGCGATGATATCAAGACATTGTGTTAATTCTTCCCAAAGGAAAATATATATTGAACTATATCTAGTCATAGTAGCCGTATGTGGAGATCACCTCTATCTACACAGATATTATATTTCATTTGTCGTTAATCATATGAGTCAAACTTTTTGGACTCATAACTTACGAATAAAAAAGAATATCACATTTGATGTAAGACTATTTGATATTTTCACGGTTTTTAACTTATGCATGTCACTTGTTAAAGTGAGAATGTTTAATTGCAAATGTTATTGTGTTAAGACGCATAATGGACCAGCCATAATAATTTGGTATCATGAATATACCCCTATACTAGAATTTGGAAAGGGTGGTGTTAACATGAAATCCTTTCCGACCCCAAGAGGCCCAAAGGAAGAAAGGCCAAGGTCTGATAATATTGAGAAGGCCGATCCTAATACTTTAAGACGACCAGGAGCAAGTTGGAGTAATGACAACTATAGAACGAAGTCCCAGGGACACAAAGAAATGCCCACTCAGACGTTAACTCCATGCCACGTGGCAGTTGATAGATTGGGCACTCGGATGTGGATTCCCACCAACTCCAGAACAAGTGGACTTGAACGGTTGTCAATTTGTTTCCACGTGTCGGCTAAGAATGGAAGGGCAGCTAGCAGGGACTTAGGGCTTATTGAGTACCTAGATATGGATGATGAATATTCCTTAGAACGGATAAACGAGAGATCTAGTGGAGGTAGCCTAGTTTTGAGGGGTGAACAACTTAAATATTGTTGTTCAGTTCTTGTTATTCTAAAACCCAAACCTACTAATGGGCGACACACAACCATTATGGCCTTTGTAAACCTCATTAGTTTTGAGAGTGGTGCTATCTATACACCCCCTATTAATTTTCATCATTTGATCCTTTTCAATTCATTTGATCCAATGATCAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

42.22

Weight (kDa)

9.27

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016246)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23630
malus_domestica MD15G1341200.v1.1
prunus_persica Prupe.6G162300_v2.0.a1 Prupe.6G162300_v2.0.a1
pyrus_communis pycom01g02920
rosa_chinensis RchiOBHm_Chr2g0119231
rosa_laevigata RLG00000018457
rosa_multiflora Rmu_sc0004760.1_g000013
rosa_roxburghii Rroxscaffold_2G00124420
rosa_rugosa Rorug02G0221100
rosa_samantha Rh2AG279100 Rh2BG289900 Rh2DG285000 Rh2DG304000
rosa_wichuraiana Rw2G022190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 55
AccB1I GGYRCC 1 cut(s) 55
AciI CCGC 2 cut(s) 101, 134
AclWI GGATC 3 cut(s) 605, 1075, 1094
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 2 cut(s) 518, 1113
AcvI CACGTG 2 cut(s) 718, 805
AfaI GTAC 2 cut(s) 57, 857
AfiI CCNNNNNNNGG 4 cut(s) 808, 865, 888, 989
AflIII ACRYGT 1 cut(s) 804
AgeI ACCGGT 1 cut(s) 58
AgsI TTSAA 3 cut(s) 236, 782, 1090
AjnI CCWGG 2 cut(s) 631, 672
AluBI AGCT 2 cut(s) 97, 830
AluI AGCT 2 cut(s) 97, 830
AlwI GGATC 3 cut(s) 605, 1075, 1094
AoxI GGCC 5 cut(s) 45, 565, 581, 606, 1011
ApeKI GCWGC 1 cut(s) 827
ApoI RAATTY 2 cut(s) 518, 1113
AseI ATTAAT 1 cut(s) 1065
AsiGI ACCGGT 1 cut(s) 58
Asp718I GGTACC 1 cut(s) 55
AspS9I GGNCC 2 cut(s) 473, 566
AsuHPI GGTGA 2 cut(s) 263, 944
AsuNHI GCTAGC 1 cut(s) 830
AvaII GGWCC 1 cut(s) 473
AxyI CCTNAGG 1 cut(s) 164
BaeGI GKGCMC 1 cut(s) 740
BanI GGYRCC 1 cut(s) 55
BbrPI CACGTG 2 cut(s) 718, 805
BbvI GCAGC 1 cut(s) 839
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 2 cut(s) 633, 674
BclI TGATCA 1 cut(s) 1107
BfaI CTAG 6 cut(s) 245, 515, 831, 860, 906, 920
BfmI CTRYAG 2 cut(s) 78, 658
BglII AGATCT 1 cut(s) 902
BisI GCNGC 1 cut(s) 828
BlsI GCNGC 1 cut(s) 829
Bme1390I CCNGG 2 cut(s) 633, 674
Bme18I GGWCC 1 cut(s) 473
BmgT120I GGNCC 2 cut(s) 473, 566
BmiI GGNNCC 2 cut(s) 57, 69
BmrFI CCNGG 2 cut(s) 633, 674
BmtI GCTAGC 1 cut(s) 834
BplI GAGNNNNNCTC 2 cut(s) 258, 290
BpmI CTGGAG 2 cut(s) 54, 748
Bpu10I CCTNAGC 4 cut(s) 146, 152, 158, 173
BsaAI YACGTR 2 cut(s) 718, 805
BsaJI CCNNGG 4 cut(s) 84, 584, 672, 673
BsaWI WCCGGW 1 cut(s) 58
BsaXI ACNNNNNCTCC 4 cut(s) 122, 152, 691, 721
Bsc4I CCNNNNNNNGG 4 cut(s) 808, 865, 888, 989
Bse118I RCCGGY 2 cut(s) 47, 58
Bse21I CCTNAGG 1 cut(s) 164
BseBI CCWGG 2 cut(s) 633, 674
BseDI CCNNGG 4 cut(s) 84, 584, 672, 673
BseGI GGATG 2 cut(s) 750, 874
BseLI CCNNNNNNNGG 4 cut(s) 808, 865, 888, 989
BseMII CTCAG 5 cut(s) 137, 143, 149, 155, 710
BseRI GAGGAG 1 cut(s) 181
BseSI GKGCMC 1 cut(s) 740
BseXI GCAGC 1 cut(s) 839
BshFI GGCC 5 cut(s) 47, 567, 583, 608, 1013
BshNI GGYRCC 1 cut(s) 55
BshTI ACCGGT 1 cut(s) 58
BsiSI CCGG 2 cut(s) 48, 59
BslFI GGGAC 3 cut(s) 655, 690, 851
BslI CCNNNNNNNGG 4 cut(s) 808, 865, 888, 989
BsmFI GGGAC 3 cut(s) 655, 690, 851
BsnI GGCC 5 cut(s) 47, 567, 583, 608, 1013
Bsp1286I GDGCHC 1 cut(s) 740
Bsp143I GATC 7 cut(s) 91, 268, 610, 902, 1080, 1099, 1107
BspACI CCGC 2 cut(s) 101, 134
BspANI GGCC 5 cut(s) 47, 567, 583, 608, 1013
BspCNI CTCAG 5 cut(s) 138, 144, 150, 156, 709
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 2 cut(s) 57, 69
BspOI GCTAGC 1 cut(s) 834
BspPI GGATC 3 cut(s) 605, 1075, 1094
BspT107I GGYRCC 1 cut(s) 55
BsrFI RCCGGY 2 cut(s) 47, 58
BssAI RCCGGY 2 cut(s) 47, 58
BssECI CCNNGG 4 cut(s) 84, 584, 672, 673
BssMI GATC 7 cut(s) 91, 268, 610, 902, 1080, 1099, 1107
BssT1I CCWWGG 2 cut(s) 84, 584
Bst2UI CCWGG 2 cut(s) 633, 674
Bst4CI ACNGT 2 cut(s) 397, 786
BstBAI YACGTR 2 cut(s) 718, 805
BstC8I GCNNGC 4 cut(s) 49, 66, 99, 832
BstDEI CTNAG 9 cut(s) 146, 152, 158, 164, 173, 696, 813, 841, 883
BstF5I GGATG 2 cut(s) 750, 874
BstKTI GATC 7 cut(s) 94, 271, 613, 905, 1083, 1102, 1110
BstMBI GATC 7 cut(s) 91, 268, 610, 902, 1080, 1099, 1107
BstNI CCWGG 2 cut(s) 633, 674
BstNSI RCATGY 1 cut(s) 415
BstSCI CCNGG 2 cut(s) 631, 672
BstSFI CTRYAG 2 cut(s) 78, 658
BstSLI GKGCMC 1 cut(s) 740
BstV1I GCAGC 1 cut(s) 839
BstX2I RGATCY 1 cut(s) 902
BstYI RGATCY 1 cut(s) 902
Bsu36I CCTNAGG 1 cut(s) 164
BsuRI GGCC 5 cut(s) 47, 567, 583, 608, 1013
BtgZI GCGATG 1 cut(s) 200
BtsCI GGATG 2 cut(s) 750, 874
Cac8I GCNNGC 4 cut(s) 49, 66, 99, 832
CciI TCATGA 1 cut(s) 496
Cfr10I RCCGGY 2 cut(s) 47, 58
Cfr13I GGNCC 2 cut(s) 473, 566
CseI GACGC 1 cut(s) 472
Csp6I GTAC 2 cut(s) 56, 856
CspAI ACCGGT 1 cut(s) 58
CviAII CATG 4 cut(s) 412, 497, 541, 711
CviQI GTAC 2 cut(s) 56, 856
DdeI CTNAG 9 cut(s) 146, 152, 158, 164, 173, 696, 813, 841, 883
DpnI GATC 7 cut(s) 93, 270, 612, 904, 1082, 1101, 1109
DpnII GATC 7 cut(s) 91, 268, 610, 902, 1080, 1099, 1107
EaeI YGGCCR 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 84, 584
Eco32I GATATC 1 cut(s) 192
Eco47I GGWCC 1 cut(s) 473
Eco72I CACGTG 2 cut(s) 718, 805
Eco81I CCTNAGG 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 631, 672
EcoRV GATATC 1 cut(s) 192
EcoT14I CCWWGG 2 cut(s) 84, 584
EcoT22I ATGCAT 1 cut(s) 413
ErhI CCWWGG 2 cut(s) 84, 584
FaeI CATG 4 cut(s) 415, 500, 544, 714
FaqI GGGAC 3 cut(s) 655, 690, 851
FatI CATG 4 cut(s) 411, 496, 540, 710
FauNDI CATATG 1 cut(s) 315
FbaI TGATCA 1 cut(s) 1107
Fnu4HI GCNGC 1 cut(s) 828
FokI GGATG 2 cut(s) 757, 881
Fsp4HI GCNGC 1 cut(s) 828
FspBI CTAG 6 cut(s) 245, 515, 831, 860, 906, 920
GluI GCNGC 1 cut(s) 828
GsuI CTGGAG 2 cut(s) 54, 748
HaeIII GGCC 5 cut(s) 47, 567, 583, 608, 1013
HapII CCGG 2 cut(s) 48, 59
HgaI GACGC 1 cut(s) 472
Hin1II CATG 4 cut(s) 415, 500, 544, 714
HincII GTYRAC 2 cut(s) 538, 705
HindII GTYRAC 2 cut(s) 538, 705
HinfI GANTC 3 cut(s) 319, 334, 751
HpaI GTTAAC 2 cut(s) 538, 705
HpaII CCGG 2 cut(s) 48, 59
HphI GGTGA 2 cut(s) 263, 944
Hpy166II GTNNAC 5 cut(s) 538, 705, 776, 935, 1021
Hpy188I TCNGA 4 cut(s) 555, 592, 699, 744
Hpy188III TCNNGA 5 cut(s) 71, 145, 195, 497, 765
Hpy8I GTNNAC 5 cut(s) 538, 705, 776, 935, 1021
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 3 cut(s) 121, 598, 816
HpyCH4III ACNGT 2 cut(s) 397, 786
HpyCH4IV ACGT 3 cut(s) 701, 717, 804
HpyCH4V TGCA 2 cut(s) 411, 444
HpyF3I CTNAG 9 cut(s) 146, 152, 158, 164, 173, 696, 813, 841, 883
HpySE526I ACGT 3 cut(s) 701, 717, 804
Hsp92II CATG 4 cut(s) 415, 500, 544, 714
KpnI GGTACC 1 cut(s) 59
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 1107
KspAI GTTAAC 2 cut(s) 538, 705
Kzo9I GATC 7 cut(s) 91, 268, 610, 902, 1080, 1099, 1107
LmnI GCTCC 2 cut(s) 73, 635
Lsp1109I GCAGC 1 cut(s) 839
MaeI CTAG 6 cut(s) 245, 515, 831, 860, 906, 920
MaeII ACGT 3 cut(s) 701, 717, 804
MaeIII GTNAC 2 cut(s) 138, 414
MalI GATC 7 cut(s) 93, 270, 612, 904, 1082, 1101, 1109
MboI GATC 7 cut(s) 91, 268, 610, 902, 1080, 1099, 1107
MboII GAAGA 3 cut(s) 101, 204, 587
MflI RGATCY 1 cut(s) 902
MhlI GDGCHC 1 cut(s) 740
MluCI AATT 8 cut(s) 208, 439, 486, 518, 792, 1066, 1090, 1113
MlyI GAGTC 2 cut(s) 328, 328
MmeI TCCRAC 2 cut(s) 578, 623
Mph1103I ATGCAT 1 cut(s) 413
MroNI GCCGGC 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 743
MspA1I CMGCKG 1 cut(s) 97
MspI CCGG 2 cut(s) 48, 59
MspR9I CCNGG 2 cut(s) 633, 674
MvaI CCWGG 2 cut(s) 633, 674
NaeI GCCGGC 1 cut(s) 49
NdeI CATATG 1 cut(s) 315
NdeII GATC 7 cut(s) 91, 268, 610, 902, 1080, 1099, 1107
NgoMIV GCCGGC 1 cut(s) 47
NheI GCTAGC 1 cut(s) 830
NlaIII CATG 4 cut(s) 415, 500, 544, 714
NlaIV GGNNCC 2 cut(s) 57, 69
NmuCI GTSAC 1 cut(s) 414
NsiI ATGCAT 1 cut(s) 413
NspI RCATGY 1 cut(s) 415
PagI TCATGA 1 cut(s) 496
PasI CCCWGGG 1 cut(s) 673
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 751
PinAI ACCGGT 1 cut(s) 58
PkrI GCNGC 1 cut(s) 829
PleI GAGTC 2 cut(s) 327, 328
PmaCI CACGTG 2 cut(s) 718, 805
PmlI CACGTG 2 cut(s) 718, 805
PpsI GAGTC 2 cut(s) 327, 328
Ppu21I YACGTR 2 cut(s) 718, 805
PshBI ATTAAT 1 cut(s) 1065
Psp6I CCWGG 2 cut(s) 631, 672
PspCI CACGTG 2 cut(s) 718, 805
PspGI CCWGG 2 cut(s) 631, 672
PspN4I GGNNCC 2 cut(s) 57, 69
PspPI GGNCC 2 cut(s) 473, 566
PsuI RGATCY 1 cut(s) 902
PvuII CAGCTG 1 cut(s) 97
RsaI GTAC 2 cut(s) 57, 857
RsaNI GTAC 2 cut(s) 56, 856
RseI CAYNNNNRTG 1 cut(s) 743
SatI GCNGC 1 cut(s) 828
Sau3AI GATC 7 cut(s) 91, 268, 610, 902, 1080, 1099, 1107
Sau96I GGNCC 2 cut(s) 473, 566
SchI GAGTC 2 cut(s) 328, 328
ScrFI CCNGG 2 cut(s) 633, 674
SduI GDGCHC 1 cut(s) 740
SfcI CTRYAG 2 cut(s) 78, 658
SinI GGWCC 1 cut(s) 473
SmiMI CAYNNNNRTG 1 cut(s) 743
Sse9I AATT 8 cut(s) 208, 439, 486, 518, 792, 1066, 1090, 1113
SsiI CCGC 2 cut(s) 101, 134
SspI AATATT 3 cut(s) 598, 878, 947
SspMI CTAG 6 cut(s) 245, 515, 831, 860, 906, 920
StyD4I CCNGG 2 cut(s) 631, 672
StyI CCWWGG 2 cut(s) 84, 584
TaaI ACNGT 2 cut(s) 397, 786
TaiI ACGT 3 cut(s) 704, 720, 807
TasI AATT 8 cut(s) 208, 439, 486, 518, 792, 1066, 1090, 1113
TfiI GAWTC 1 cut(s) 751
TseFI GTSAC 1 cut(s) 414
TseI GCWGC 1 cut(s) 827
Tsp45I GTSAC 1 cut(s) 414
TspDTI ATGAA 6 cut(s) 288, 513, 557, 888, 1061, 1083
TspGWI ACGGA 1 cut(s) 904
VpaK11BI GGWCC 1 cut(s) 473
VspI ATTAAT 1 cut(s) 1065
XapI RAATTY 2 cut(s) 518, 1113
XceI RCATGY 1 cut(s) 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 639
XspI CTAG 6 cut(s) 245, 515, 831, 860, 906, 920
Zsp2I ATGCAT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.