FvH4_1g24530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017231
Physical Location & Seq
Forward (+)
16368208 .. 16369321
1114 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24530.t1

Sequence Viewer

Length: 735 bp
ATGCTTGATCAGTGCCAAAAGTTCCCTAGGAATCAGCTCTATGTAACCTGCCATGTCCACAGCAGACAAGAGAGTGCAGAAGACAAAGAGTTTGGTTTCTGGACTGCATGGGATTTTCAAGCTCAGGCATGTCTTGAAGAAGATCTCGGTGCTCACACACCGCGGTTATGGGAAACAAACACCAAATTTGAGTCTTCTCCTTTGCTCCCCCAAAACCATCACCACAGTGATCTATCTCCCAAGTCACGAAGACGTGTGATTCTTGAAAGCAGGACCGAACTTATGCAGATGGTTCAAAACATGCCAGAGTCATGTTATGAACTTTCTCTGAAAGATCTTGTTGGTGAGCAACAAGGTGAGCAGAAGGCTGGAGAAGGCACTGATGTTGAAGAGAAGAGCTTTGACTTCAACAATCAAGCTCAAATCAGGAACCAGAAGAAGAAAACAACCTACAAGACAAGGCAGATATCGCGGACTTCTAGTATGGAAAGCGAAACATTCCTTATCAAGATGTTCTTTCCAACTTTTCTAGGCTCAAAGAAGAAAGGAAAAGCAGCTGGGAATTGCTCAAAAGTTTCCCCAAGGCCATCACTTGAAGGACCTGAGAACCATAAAGATTTGTGTGTTGATAGCACAGGCAGCAGAAGAAGGGCTTCTGATGACGATACATTACCTAGTTGCTGGACCTTCTTCCAGAGCAAGAAAGGCAAAAGCAAAAGACCAAGGGGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

28.02

Weight (kDa)

8.78

Isoelectric Point (pI)

59.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017231)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24530
prunus_persica Prupe.4G272900_v2.0.a1
pyrus_communis pycom14g02640
rosa_chinensis RchiOBHm_Chr2g0121941
rosa_laevigata RLG00000018635
rosa_multiflora Rmu_sc0003880.1_g000022
rosa_roxburghii Rroxscaffold_2G00122200
rosa_rugosa Rorug02G0234900
rosa_samantha Rh2AG292000 Rh2BG302200 Rh2CG281000
rosa_wichuraiana Rw2G023410 Rw2G023430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 56
AccII CGCG 2 cut(s) 163, 472
AciI CCGC 3 cut(s) 161, 163, 472
AcsI RAATTY 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 253
AgsI TTSAA 7 cut(s) 119, 137, 266, 296, 389, 409, 596
AjiI CACGTC 1 cut(s) 254
AleI CACNNNNGTG 1 cut(s) 225
AluBI AGCT 6 cut(s) 37, 122, 399, 419, 557, 732
AluI AGCT 6 cut(s) 37, 122, 399, 419, 557, 732
Alw21I GWGCWC 1 cut(s) 154
AoxI GGCC 1 cut(s) 584
ApeKI GCWGC 2 cut(s) 554, 639
ApoI RAATTY 1 cut(s) 185
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp700I GAANNNNTTC 1 cut(s) 652
AspA2I CCTAGG 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 273, 599, 684
AsuHPI GGTGA 3 cut(s) 212, 356, 368
AvaII GGWCC 3 cut(s) 273, 599, 684
AvrII CCTAGG 1 cut(s) 26
BbsI GAAGAC 3 cut(s) 87, 186, 256
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 566, 651
BccI CCATC 3 cut(s) 225, 283, 595
BclI TGATCA 1 cut(s) 7
BfaI CTAG 4 cut(s) 27, 480, 530, 675
BfuAI ACCTGC 1 cut(s) 56
BglII AGATCT 2 cut(s) 142, 334
BisI GCNGC 2 cut(s) 555, 640
BlnI CCTAGG 1 cut(s) 26
BlsI GCNGC 2 cut(s) 556, 641
Bme18I GGWCC 3 cut(s) 273, 599, 684
BmgBI CACGTC 1 cut(s) 254
BmgT120I GGNCC 3 cut(s) 273, 599, 684
BmiI GGNNCC 1 cut(s) 431
BpiI GAAGAC 3 cut(s) 87, 186, 256
BpmI CTGGAG 1 cut(s) 390
Bpu10I CCTNAGC 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 26, 161, 581, 722
BseDI CCNNGG 4 cut(s) 26, 161, 581, 722
BseMII CTCAG 2 cut(s) 137, 594
BseXI GCAGC 2 cut(s) 566, 651
BseYI CCCAGC 1 cut(s) 557
BsgI GTGCAG 1 cut(s) 96
Bsh1236I CGCG 2 cut(s) 163, 472
BshFI GGCC 1 cut(s) 586
BsiHKAI GWGCWC 1 cut(s) 154
BsnI GGCC 1 cut(s) 586
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 4 cut(s) 7, 142, 229, 334
BspACI CCGC 3 cut(s) 161, 163, 472
BspANI GGCC 1 cut(s) 586
BspCNI CTCAG 2 cut(s) 136, 595
BspFNI CGCG 2 cut(s) 163, 472
BspLI GGNNCC 1 cut(s) 431
BspMI ACCTGC 1 cut(s) 56
BspQI GCTCTTC 1 cut(s) 389
BssECI CCNNGG 4 cut(s) 26, 161, 581, 722
BssMI GATC 4 cut(s) 7, 142, 229, 334
BssT1I CCWWGG 3 cut(s) 26, 581, 722
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 2 cut(s) 384, 389
BstDEI CTNAG 2 cut(s) 123, 603
BstDSI CCRYGG 1 cut(s) 161
BstFNI CGCG 2 cut(s) 163, 472
BstKTI GATC 4 cut(s) 10, 145, 232, 337
BstMBI GATC 4 cut(s) 7, 142, 229, 334
BstMWI GCNNNNNNNGC 3 cut(s) 469, 639, 705
BstNSI RCATGY 2 cut(s) 132, 304
BstUI CGCG 2 cut(s) 163, 472
BstV1I GCAGC 2 cut(s) 566, 651
BstV2I GAAGAC 3 cut(s) 87, 186, 256
BstX2I RGATCY 2 cut(s) 142, 334
BstYI RGATCY 2 cut(s) 142, 334
BsuRI GGCC 1 cut(s) 586
BtgI CCRYGG 1 cut(s) 161
BtrI CACGTC 1 cut(s) 254
BtsIMutI CAGTG 3 cut(s) 17, 232, 378
BveI ACCTGC 1 cut(s) 56
Cfr13I GGNCC 3 cut(s) 273, 599, 684
Cfr42I CCGCGG 1 cut(s) 164
CviAII CATG 5 cut(s) 53, 108, 129, 301, 312
DdeI CTNAG 2 cut(s) 123, 603
DpnI GATC 4 cut(s) 9, 144, 231, 336
DpnII GATC 4 cut(s) 7, 142, 229, 334
Eam1104I CTCTTC 2 cut(s) 384, 389
EarI CTCTTC 2 cut(s) 384, 389
Eco130I CCWWGG 3 cut(s) 26, 581, 722
Eco32I GATATC 1 cut(s) 468
Eco47I GGWCC 3 cut(s) 273, 599, 684
EcoO109I RGGNCCY 1 cut(s) 599
EcoRV GATATC 1 cut(s) 468
EcoT14I CCWWGG 3 cut(s) 26, 581, 722
ErhI CCWWGG 3 cut(s) 26, 581, 722
FaeI CATG 5 cut(s) 56, 111, 132, 304, 315
FalI AAGNNNNNCTT 4 cut(s) 500, 532, 637, 669
FatI CATG 5 cut(s) 52, 107, 128, 300, 311
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 555, 640
Fsp4HI GCNGC 2 cut(s) 555, 640
FspBI CTAG 4 cut(s) 27, 480, 530, 675
GluI GCNGC 2 cut(s) 555, 640
GsaI CCCAGC 1 cut(s) 561
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 1 cut(s) 586
Hin1II CATG 5 cut(s) 56, 111, 132, 304, 315
HinfI GANTC 4 cut(s) 31, 191, 259, 308
HphI GGTGA 3 cut(s) 212, 356, 368
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 330, 658
Hpy188III TCNNGA 7 cut(s) 100, 134, 246, 263, 427, 508, 694
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 5 cut(s) 358, 368, 590, 642, 697
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 3 cut(s) 77, 107, 286
HpyF10VI GCNNNNNNNGC 3 cut(s) 469, 639, 705
HpyF3I CTNAG 2 cut(s) 123, 603
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 5 cut(s) 56, 111, 132, 304, 315
Ksp22I TGATCA 1 cut(s) 7
KspI CCGCGG 1 cut(s) 164
Kzo9I GATC 4 cut(s) 7, 142, 229, 334
LguI GCTCTTC 1 cut(s) 389
LmnI GCTCC 1 cut(s) 210
Lsp1109I GCAGC 2 cut(s) 566, 651
MaeI CTAG 4 cut(s) 27, 480, 530, 675
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 2 cut(s) 43, 243
MalI GATC 4 cut(s) 9, 144, 231, 336
MboI GATC 4 cut(s) 7, 142, 229, 334
MflI RGATCY 2 cut(s) 142, 334
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 2 cut(s) 185, 562
MlyI GAGTC 2 cut(s) 200, 317
MmeI TCCRAC 1 cut(s) 545
MroXI GAANNNNTTC 1 cut(s) 652
MslI CAYNNNNRTG 1 cut(s) 225
MspA1I CMGCKG 2 cut(s) 163, 557
MvnI CGCG 2 cut(s) 163, 472
MwoI GCNNNNNNNGC 3 cut(s) 469, 639, 705
NdeII GATC 4 cut(s) 7, 142, 229, 334
NlaIII CATG 5 cut(s) 56, 111, 132, 304, 315
NlaIV GGNNCC 1 cut(s) 431
NmuCI GTSAC 1 cut(s) 243
NspI RCATGY 2 cut(s) 132, 304
OliI CACNNNNGTG 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 389
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 2 cut(s) 31, 259
PkrI GCNGC 2 cut(s) 556, 641
PleI GAGTC 2 cut(s) 199, 316
PpsI GAGTC 2 cut(s) 199, 316
PpuMI RGGWCCY 1 cut(s) 599
Psp5II RGGWCCY 1 cut(s) 599
PspFI CCCAGC 1 cut(s) 557
PspN4I GGNNCC 1 cut(s) 431
PspPI GGNCC 3 cut(s) 273, 599, 684
PspPPI RGGWCCY 1 cut(s) 599
PsuI RGATCY 2 cut(s) 142, 334
PvuII CAGCTG 1 cut(s) 557
RseI CAYNNNNRTG 1 cut(s) 225
SacII CCGCGG 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 389
SatI GCNGC 2 cut(s) 555, 640
Sau3AI GATC 4 cut(s) 7, 142, 229, 334
Sau96I GGNCC 3 cut(s) 273, 599, 684
SchI GAGTC 2 cut(s) 200, 317
SduI GDGCHC 1 cut(s) 154
Sfr303I CCGCGG 1 cut(s) 164
SgrBI CCGCGG 1 cut(s) 164
SinI GGWCC 3 cut(s) 273, 599, 684
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 2 cut(s) 185, 562
SsiI CCGC 3 cut(s) 161, 163, 472
SspMI CTAG 4 cut(s) 27, 480, 530, 675
StyI CCWWGG 3 cut(s) 26, 581, 722
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 1 cut(s) 256
TaqII GACCGA 1 cut(s) 290
TasI AATT 2 cut(s) 185, 562
TfiI GAWTC 2 cut(s) 31, 259
TscAI CASTG 3 cut(s) 17, 232, 385
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 2 cut(s) 554, 639
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 3 cut(s) 17, 232, 385
VpaK11BI GGWCC 3 cut(s) 273, 599, 684
XapI RAATTY 1 cut(s) 185
XceI RCATGY 2 cut(s) 132, 304
XmaJI CCTAGG 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 652
XspI CTAG 4 cut(s) 27, 480, 530, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.