Prupe.4G272900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017231
Physical Location & Seq
Forward (+)
22534711 .. 22535637
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G272900.1

Sequence Viewer

Length: 783 bp
ATGCTTGATCTTGATCAGTGTCAAAACTTTCCTAGGAATCATCTCTCTCCAAGCTGCCATGTCCGCAGCAGTTGTCGCGGTAGTGCAGAAGAAAAAGACTTTGATTTCTGGGAAACGAACACGTTGTTGAGATGGAACATCGAAGATGAGTCTTCTCCTTTGCTCCCCAACAACCACCACTATAGTGATCCTTGTACAATGACGACGTTGTCACAAAGACAAGCAGCGATTGTTCAAAGTAGGAGGGAGCTGATGGAAATGATCCAAGACATGCCCGAGTCATGTTACGAACTTTCTCTAAAAGATATTGTTGATGATGAGCAACAAGGTGCTCAGGAGGTTGGAGAAGAAGAAACTGATGCCAAAGAGACAAGTTTCAGCTTTCGCAGTGAAGAAGTCCAAATCAGGAAGCAAAAGAGCAACGTGAAGAAGAAAAGCAGCTGCGAAATATCAAGGACTTGTTCAAGCATGGAAAGTGAAACTTTCCTACTTAAGATGTTCTTTCCAACTTTTCTAGGTTCAAAGAAGAAACCAAAATCACCTGGGAATCGCTCCTCAAAAGTTACCCCAAGCCCTTCATTATCATTGAAGGACAACCATAAAGATTGGTGTAAGATAAGGACATTTTTCCTTGCAGGAGTAAATAAAAACAACCAGGGAAATAACAGCAGCTGCATCAGCAGAACTAGGTTTTCTGATGAGACCAATACGTTACCTGGGTGCTGGTTCTTCTTCCACAGCAAGAAAAGCAAAACCAAGAGACAAAAGGGATGCTTATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

29.9

Weight (kDa)

8.25

Isoelectric Point (pI)

71.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017231)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24530
prunus_persica Prupe.4G272900_v2.0.a1
pyrus_communis pycom14g02640
rosa_chinensis RchiOBHm_Chr2g0121941
rosa_laevigata RLG00000018635
rosa_multiflora Rmu_sc0003880.1_g000022
rosa_roxburghii Rroxscaffold_2G00122200
rosa_rugosa Rorug02G0234900
rosa_samantha Rh2AG292000 Rh2BG302200 Rh2CG281000
rosa_wichuraiana Rw2G023410 Rw2G023430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 208
AccII CGCG 1 cut(s) 78
AciI CCGC 2 cut(s) 64, 78
AclWI GGATC 2 cut(s) 182, 256
AfaI GTAC 1 cut(s) 196
AflII CTTAAG 1 cut(s) 491
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 4 cut(s) 236, 465, 522, 589
AjnI CCWGG 3 cut(s) 541, 654, 715
AleI CACNNNNGTG 1 cut(s) 183
AluBI AGCT 5 cut(s) 54, 250, 381, 441, 672
AluI AGCT 5 cut(s) 54, 250, 381, 441, 672
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 3 cut(s) 362, 695, 754
AlwI GGATC 2 cut(s) 182, 256
AlwNI CAGNNNCTG 1 cut(s) 672
Ama87I CYCGRG 1 cut(s) 275
ApeKI GCWGC 7 cut(s) 54, 66, 224, 438, 441, 669, 672
AspA2I CCTAGG 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 531
AvaI CYCGRG 1 cut(s) 275
AvrII CCTAGG 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 7 cut(s) 41, 78, 236, 428, 450, 659, 681
BccI CCATC 2 cut(s) 126, 247
BciT130I CCWGG 3 cut(s) 543, 656, 717
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 3 cut(s) 362, 695, 754
BfaI CTAG 3 cut(s) 33, 515, 687
BfmI CTRYAG 1 cut(s) 181
BfrI CTTAAG 1 cut(s) 491
BisI GCNGC 7 cut(s) 55, 67, 225, 439, 442, 670, 673
BlnI CCTAGG 1 cut(s) 32
BlsI GCNGC 7 cut(s) 56, 68, 226, 440, 443, 671, 674
Bme1390I CCNGG 3 cut(s) 543, 656, 717
BmeT110I CYCGRG 1 cut(s) 275
BmrFI CCNGG 3 cut(s) 543, 656, 717
BmsI GCATC 3 cut(s) 349, 684, 761
BpiI GAAGAC 1 cut(s) 144
Bpu10I CCTNAGC 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 695
BsaJI CCNNGG 4 cut(s) 32, 542, 655, 716
Bse8I GATNNNNATC 1 cut(s) 12
BseBI CCWGG 3 cut(s) 543, 656, 717
BseDI CCNNGG 4 cut(s) 32, 542, 655, 716
BseGI GGATG 1 cut(s) 776
BseJI GATNNNNATC 1 cut(s) 12
BseMII CTCAG 1 cut(s) 347
BseRI GAGGAG 1 cut(s) 544
BseXI GCAGC 7 cut(s) 41, 78, 236, 428, 450, 659, 681
BsgI GTGCAG 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 275
BsmAI GTCTC 3 cut(s) 362, 695, 754
Bso31I GGTCTC 1 cut(s) 695
BsoBI CYCGRG 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 334
Bsp1407I TGTACA 1 cut(s) 194
Bsp143I GATC 4 cut(s) 7, 13, 187, 261
BspACI CCGC 2 cut(s) 64, 78
BspCNI CTCAG 1 cut(s) 346
BspFNI CGCG 1 cut(s) 78
BspPI GGATC 2 cut(s) 182, 256
BspTI CTTAAG 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 695
BsrGI TGTACA 1 cut(s) 194
BssECI CCNNGG 4 cut(s) 32, 542, 655, 716
BssMI GATC 4 cut(s) 7, 13, 187, 261
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 3 cut(s) 543, 656, 717
BstAFI CTTAAG 1 cut(s) 491
BstAUI TGTACA 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 776
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 4 cut(s) 10, 16, 190, 264
BstMAI GTCTC 3 cut(s) 362, 695, 754
BstMBI GATC 4 cut(s) 7, 13, 187, 261
BstMWI GCNNNNNNNGC 4 cut(s) 63, 75, 678, 747
BstNI CCWGG 3 cut(s) 543, 656, 717
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 3 cut(s) 541, 654, 715
BstSFI CTRYAG 1 cut(s) 181
BstUI CGCG 1 cut(s) 78
BstV1I GCAGC 7 cut(s) 41, 78, 236, 428, 450, 659, 681
BstV2I GAAGAC 1 cut(s) 144
BtsCI GGATG 1 cut(s) 776
BtsI GCAGTG 1 cut(s) 394
BtsIMutI CAGTG 2 cut(s) 23, 394
CaiI CAGNNNCTG 1 cut(s) 672
Csp6I GTAC 1 cut(s) 195
CviAII CATG 4 cut(s) 59, 271, 282, 469
CviJI RGCY 6 cut(s) 54, 250, 381, 441, 573, 672
CviKI_1 RGCY 6 cut(s) 54, 250, 381, 441, 573, 672
CviQI GTAC 1 cut(s) 195
DdeI CTNAG 1 cut(s) 333
DpnI GATC 4 cut(s) 9, 15, 189, 263
DpnII GATC 4 cut(s) 7, 13, 187, 261
DrdI GACNNNNNNGTC 1 cut(s) 208
DseDI GACNNNNNNGTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 32
Eco31I GGTCTC 1 cut(s) 695
Eco88I CYCGRG 1 cut(s) 275
EcoRII CCWGG 3 cut(s) 541, 654, 715
EcoT14I CCWWGG 1 cut(s) 32
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 4 cut(s) 62, 274, 285, 472
FaiI YATR 6 cut(s) 60, 183, 272, 283, 470, 600
FalI AAGNNNNNCTT 5 cut(s) 466, 498, 485, 517, 758
FatI CATG 4 cut(s) 58, 270, 281, 468
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 7 cut(s) 55, 67, 225, 439, 442, 670, 673
Fsp4HI GCNGC 7 cut(s) 55, 67, 225, 439, 442, 670, 673
FspBI CTAG 3 cut(s) 33, 515, 687
GluI GCNGC 7 cut(s) 55, 67, 225, 439, 442, 670, 673
Hin1II CATG 4 cut(s) 62, 274, 285, 472
HinfI GANTC 4 cut(s) 37, 149, 278, 547
HphI GGTGA 1 cut(s) 531
Hpy188I TCNGA 1 cut(s) 697
Hpy188III TCNNGA 3 cut(s) 11, 335, 406
Hpy99I CGWCG 1 cut(s) 208
HpyAV CCTTC 2 cut(s) 583, 585
HpyCH4IV ACGT 4 cut(s) 122, 206, 423, 710
HpyCH4V TGCA 3 cut(s) 86, 635, 675
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 75, 678, 747
HpyF3I CTNAG 1 cut(s) 333
HpySE526I ACGT 4 cut(s) 122, 206, 423, 710
Hsp92II CATG 4 cut(s) 62, 274, 285, 472
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 4 cut(s) 7, 13, 187, 261
LmnI GCTCC 3 cut(s) 168, 247, 557
Lsp1109I GCAGC 7 cut(s) 41, 78, 236, 428, 450, 659, 681
LweI GCATC 3 cut(s) 349, 684, 761
MaeI CTAG 3 cut(s) 33, 515, 687
MaeII ACGT 4 cut(s) 122, 206, 423, 710
MaeIII GTNAC 4 cut(s) 210, 284, 562, 711
MalI GATC 4 cut(s) 9, 15, 189, 263
MboI GATC 4 cut(s) 7, 13, 187, 261
MhlI GDGCHC 1 cut(s) 334
MlyI GAGTC 2 cut(s) 158, 287
MmeI TCCRAC 2 cut(s) 322, 530
MnlI CCTC 3 cut(s) 237, 331, 565
MseI TTAA 1 cut(s) 492
MslI CAYNNNNRTG 1 cut(s) 183
MspA1I CMGCKG 2 cut(s) 441, 672
MspCI CTTAAG 1 cut(s) 491
MspR9I CCNGG 3 cut(s) 543, 656, 717
MvaI CCWGG 3 cut(s) 543, 656, 717
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 4 cut(s) 63, 75, 678, 747
NdeII GATC 4 cut(s) 7, 13, 187, 261
NlaIII CATG 4 cut(s) 62, 274, 285, 472
NmuCI GTSAC 1 cut(s) 210
NspI RCATGY 1 cut(s) 274
OliI CACNNNNGTG 1 cut(s) 183
PfeI GAWTC 2 cut(s) 37, 547
PflFI GACNNNGTC 1 cut(s) 208
PkrI GCNGC 7 cut(s) 56, 68, 226, 440, 443, 671, 674
PleI GAGTC 2 cut(s) 157, 286
PpsI GAGTC 2 cut(s) 157, 286
Psp6I CCWGG 3 cut(s) 541, 654, 715
PspGI CCWGG 3 cut(s) 541, 654, 715
PstNI CAGNNNCTG 1 cut(s) 672
PsyI GACNNNGTC 1 cut(s) 208
PvuII CAGCTG 2 cut(s) 441, 672
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
RseI CAYNNNNRTG 1 cut(s) 183
SaqAI TTAA 1 cut(s) 492
SatI GCNGC 7 cut(s) 55, 67, 225, 439, 442, 670, 673
Sau3AI GATC 4 cut(s) 7, 13, 187, 261
SchI GAGTC 2 cut(s) 158, 287
ScrFI CCNGG 3 cut(s) 543, 656, 717
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 3 cut(s) 349, 684, 761
SfcI CTRYAG 1 cut(s) 181
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
SsiI CCGC 2 cut(s) 64, 78
SspMI CTAG 3 cut(s) 33, 515, 687
StyD4I CCNGG 3 cut(s) 541, 654, 715
StyI CCWWGG 1 cut(s) 32
TaiI ACGT 4 cut(s) 125, 209, 426, 713
TaqI TCGA 1 cut(s) 141
TatI WGTACW 1 cut(s) 194
TfiI GAWTC 2 cut(s) 37, 547
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 2 cut(s) 23, 394
TseFI GTSAC 1 cut(s) 210
TseI GCWGC 7 cut(s) 54, 66, 224, 438, 441, 669, 672
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 567
TspRI CASTG 2 cut(s) 23, 394
Tth111I GACNNNGTC 1 cut(s) 208
Vha464I CTTAAG 1 cut(s) 491
XceI RCATGY 1 cut(s) 274
XmaJI CCTAGG 1 cut(s) 32
XspI CTAG 3 cut(s) 33, 515, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.