Rh2CG281000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017231
Physical Location & Seq
Forward (+)
31269568 .. 31270424
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG281000.1

Sequence Viewer

Length: 774 bp
ATGCTTGATCAGTGCCAAAAGTTCTCTAGAAATCAGCTCTATGTAACCTGCCATGTCCACAGCCGACACGAGAGTGCAGAAGACAAAGAGTTCGGTTTCTGTAGTGCATGGGAGTTTCAAGCTCAAGCATGTATTGAAGCAGATCTCGGTGCTCACTCGCCACGGTTATGGGAGACAAACACCAAATACGAGTCTTCTCCTTTGCTCCCCCAAAACCATCACTACAGTGATCTTTCTCCCACGTCGCGCCGACGGGTGATTCTTGAAAGCAAGAGTCAACTTATGCAGATGATTCAAAACATACCAGAGTCATATCATGAACTTTCTCTGAAAGATATTGTTGATGAGCAACAAGGTATGCAGAAGGCTGGAGAAGGCACTGATGTTGAAGAGAAGAGTTTCGACTTCAAGACTCAAGCTCAAATTAAGAAGCAGGAGAAGAAAATAACATACAAGACTAGACAGATATCGCGGACTTCAAGTATGGAAAGCGAAACTTTCCTAATCAAGATGTTCTTTCCAACTTTTCTAGGCTCAAAGAAGAAAGCAAAAGTAGCTGGGAATCGCTCAAAAGTTTCCCCAAGGCCATCATTTGAAGAACCTGAGAACCATAAAGATTTGTGTGTTGAAGGCACAAGCAGCGGAAGAAGTTTGATAGGATTTAACAATAATGGATTTTTCATATCACTCAACATTGCAGGTTTTCTGAGGACGATACCTTACCTGGTTGCTGGACCTTCTTCCGGAGCAAGAAAGGCAAAAGCAAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

29.18

Weight (kDa)

8.85

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017231)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24530
prunus_persica Prupe.4G272900_v2.0.a1
pyrus_communis pycom14g02640
rosa_chinensis RchiOBHm_Chr2g0121941
rosa_laevigata RLG00000018635
rosa_multiflora Rmu_sc0003880.1_g000022
rosa_roxburghii Rroxscaffold_2G00122200
rosa_rugosa Rorug02G0234900
rosa_samantha Rh2AG292000 Rh2BG302200 Rh2CG281000
rosa_wichuraiana Rw2G023410 Rw2G023430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 56, 689
AccII CGCG 2 cut(s) 247, 472
AccIII TCCGGA 1 cut(s) 743
AciI CCGC 2 cut(s) 472, 642
AfiI CCNNNNNNNGG 1 cut(s) 743
AgsI TTSAA 9 cut(s) 119, 137, 266, 296, 389, 409, 480, 596, 629
AjiI CACGTC 1 cut(s) 243
AjnI CCWGG 1 cut(s) 723
AleI CACNNNNGTG 2 cut(s) 72, 225
AluBI AGCT 4 cut(s) 37, 122, 419, 557
AluI AGCT 4 cut(s) 37, 122, 419, 557
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 167
Aor13HI TCCGGA 1 cut(s) 743
AoxI GGCC 1 cut(s) 584
ApeKI GCWGC 1 cut(s) 639
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp700I GAANNNNTTC 1 cut(s) 398
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 734
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 734
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 87, 186
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 651
BccI CCATC 2 cut(s) 225, 595
BciT130I CCWGG 1 cut(s) 725
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 3 cut(s) 27, 459, 530
BfmI CTRYAG 2 cut(s) 100, 223
BfuAI ACCTGC 2 cut(s) 56, 689
BglII AGATCT 1 cut(s) 142
BisI GCNGC 1 cut(s) 640
BlsI GCNGC 1 cut(s) 641
Bme1390I CCNGG 1 cut(s) 725
Bme18I GGWCC 1 cut(s) 734
BmgBI CACGTC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 734
BmrFI CCNGG 1 cut(s) 725
BpiI GAAGAC 2 cut(s) 87, 186
BpmI CTGGAG 1 cut(s) 390
BpuEI CTTGAG 2 cut(s) 108, 399
BsaJI CCNNGG 2 cut(s) 161, 581
BsaWI WCCGGW 1 cut(s) 743
Bsc4I CCNNNNNNNGG 1 cut(s) 743
Bse3DI GCAATG 1 cut(s) 693
BseAI TCCGGA 1 cut(s) 743
BseBI CCWGG 1 cut(s) 725
BseDI CCNNGG 2 cut(s) 161, 581
BseLI CCNNNNNNNGG 1 cut(s) 743
BseMI GCAATG 1 cut(s) 693
BseMII CTCAG 2 cut(s) 594, 698
BseXI GCAGC 1 cut(s) 651
BseYI CCCAGC 1 cut(s) 557
BsgI GTGCAG 1 cut(s) 96
Bsh1236I CGCG 2 cut(s) 247, 472
BshFI GGCC 1 cut(s) 586
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 744
BslI CCNNNNNNNGG 1 cut(s) 743
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 1 cut(s) 586
Bsp1286I GDGCHC 1 cut(s) 154
Bsp13I TCCGGA 1 cut(s) 743
Bsp143I GATC 3 cut(s) 7, 142, 229
BspACI CCGC 2 cut(s) 472, 642
BspANI GGCC 1 cut(s) 586
BspCNI CTCAG 2 cut(s) 595, 699
BspEI TCCGGA 1 cut(s) 743
BspFNI CGCG 2 cut(s) 247, 472
BspHI TCATGA 1 cut(s) 316
BspMI ACCTGC 2 cut(s) 56, 689
BsrDI GCAATG 1 cut(s) 693
BssECI CCNNGG 2 cut(s) 161, 581
BssMI GATC 3 cut(s) 7, 142, 229
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 581
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 725
Bst4CI ACNGT 2 cut(s) 165, 227
Bst6I CTCTTC 2 cut(s) 384, 389
BstDEI CTNAG 2 cut(s) 603, 707
BstDSI CCRYGG 1 cut(s) 161
BstFNI CGCG 2 cut(s) 247, 472
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 3 cut(s) 10, 145, 232
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 3 cut(s) 7, 142, 229
BstMWI GCNNNNNNNGC 3 cut(s) 554, 639, 755
BstNI CCWGG 1 cut(s) 725
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 723
BstSFI CTRYAG 2 cut(s) 100, 223
BstUI CGCG 2 cut(s) 247, 472
BstV1I GCAGC 1 cut(s) 651
BstV2I GAAGAC 2 cut(s) 87, 186
BstX2I RGATCY 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 168
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 1 cut(s) 586
BtgI CCRYGG 1 cut(s) 161
BtrI CACGTC 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 17, 232, 378
BveI ACCTGC 2 cut(s) 56, 689
CciI TCATGA 1 cut(s) 316
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 734
CsiI ACCWGGT 1 cut(s) 723
CviAII CATG 4 cut(s) 53, 108, 129, 317
CviJI RGCY 8 cut(s) 37, 63, 122, 368, 419, 534, 557, 586
CviKI_1 RGCY 8 cut(s) 37, 63, 122, 368, 419, 534, 557, 586
DdeI CTNAG 2 cut(s) 603, 707
DpnI GATC 3 cut(s) 9, 144, 231
DpnII GATC 3 cut(s) 7, 142, 229
Eam1104I CTCTTC 2 cut(s) 384, 389
EarI CTCTTC 2 cut(s) 384, 389
Eco130I CCWWGG 1 cut(s) 581
Eco32I GATATC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 734
EcoRII CCWGG 1 cut(s) 723
EcoRV GATATC 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 4 cut(s) 56, 111, 132, 320
FalI AAGNNNNNCTT 4 cut(s) 481, 513, 500, 532
FatI CATG 4 cut(s) 52, 107, 128, 316
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 640
Fsp4HI GCNGC 1 cut(s) 640
FspBI CTAG 3 cut(s) 27, 459, 530
GlaI GCGC 1 cut(s) 248
GluI GCNGC 1 cut(s) 640
GsaI CCCAGC 1 cut(s) 561
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 1 cut(s) 586
HapII CCGG 1 cut(s) 744
HhaI GCGC 1 cut(s) 249
Hin1II CATG 4 cut(s) 56, 111, 132, 320
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 1 cut(s) 278
HindII GTYRAC 1 cut(s) 278
HinfI GANTC 7 cut(s) 191, 259, 274, 292, 308, 412, 562
HpaII CCGG 1 cut(s) 744
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 58, 278
Hpy188I TCNGA 2 cut(s) 330, 708
Hpy188III TCNNGA 6 cut(s) 27, 263, 317, 409, 508, 744
Hpy8I GTNNAC 2 cut(s) 58, 278
Hpy99I CGWCG 2 cut(s) 247, 255
HpyAV CCTTC 4 cut(s) 358, 368, 623, 747
HpyCH4III ACNGT 2 cut(s) 165, 227
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 5 cut(s) 77, 107, 286, 361, 698
HpyF10VI GCNNNNNNNGC 3 cut(s) 554, 639, 755
HpyF3I CTNAG 2 cut(s) 603, 707
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 4 cut(s) 56, 111, 132, 320
HspAI GCGC 1 cut(s) 247
Kpn2I TCCGGA 1 cut(s) 743
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 3 cut(s) 7, 142, 229
LmnI GCTCC 2 cut(s) 210, 746
Lsp1109I GCAGC 1 cut(s) 651
MabI ACCWGGT 1 cut(s) 723
MaeI CTAG 3 cut(s) 27, 459, 530
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 43
MalI GATC 3 cut(s) 9, 144, 231
MboI GATC 3 cut(s) 7, 142, 229
MboII GAAGA 9 cut(s) 92, 186, 401, 406, 451, 553, 608, 657, 732
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 423
MlyI GAGTC 4 cut(s) 200, 283, 317, 406
MmeI TCCRAC 1 cut(s) 545
MnlI CCTC 1 cut(s) 702
MroI TCCGGA 1 cut(s) 743
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 2 cut(s) 426, 663
MslI CAYNNNNRTG 3 cut(s) 72, 166, 225
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 1 cut(s) 744
MspR9I CCNGG 1 cut(s) 725
MvaI CCWGG 1 cut(s) 725
MvnI CGCG 2 cut(s) 247, 472
MwoI GCNNNNNNNGC 3 cut(s) 554, 639, 755
NdeII GATC 3 cut(s) 7, 142, 229
NlaIII CATG 4 cut(s) 56, 111, 132, 320
NspI RCATGY 1 cut(s) 132
OliI CACNNNNGTG 2 cut(s) 72, 225
PagI TCATGA 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 3 cut(s) 259, 292, 562
PkrI GCNGC 1 cut(s) 641
PleI GAGTC 4 cut(s) 199, 282, 316, 406
PpsI GAGTC 4 cut(s) 199, 282, 316, 406
Psp6I CCWGG 1 cut(s) 723
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 1 cut(s) 723
PspPI GGNCC 1 cut(s) 734
PsuI RGATCY 1 cut(s) 142
RseI CAYNNNNRTG 3 cut(s) 72, 166, 225
SaqAI TTAA 2 cut(s) 426, 663
SatI GCNGC 1 cut(s) 640
Sau3AI GATC 3 cut(s) 7, 142, 229
Sau96I GGNCC 1 cut(s) 734
SchI GAGTC 4 cut(s) 200, 283, 317, 406
ScrFI CCNGG 1 cut(s) 725
SduI GDGCHC 1 cut(s) 154
SexAI ACCWGGT 1 cut(s) 723
SfcI CTRYAG 2 cut(s) 100, 223
SinI GGWCC 1 cut(s) 734
SmiMI CAYNNNNRTG 3 cut(s) 72, 166, 225
SmlI CTYRAG 2 cut(s) 123, 414
SmoI CTYRAG 2 cut(s) 123, 414
Sse9I AATT 1 cut(s) 423
SsiI CCGC 2 cut(s) 472, 642
SspMI CTAG 3 cut(s) 27, 459, 530
StyD4I CCNGG 1 cut(s) 723
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 2 cut(s) 165, 227
TaiI ACGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 402
TasI AATT 1 cut(s) 423
TfiI GAWTC 3 cut(s) 259, 292, 562
Tru1I TTAA 2 cut(s) 426, 663
Tru9I TTAA 2 cut(s) 426, 663
TscAI CASTG 3 cut(s) 17, 232, 385
TseI GCWGC 1 cut(s) 639
TspDTI ATGAA 2 cut(s) 333, 670
TspRI CASTG 3 cut(s) 17, 232, 385
VpaK11BI GGWCC 1 cut(s) 734
XbaI TCTAGA 1 cut(s) 26
XceI RCATGY 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 3 cut(s) 27, 459, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.