pycom14g02640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0017231
Physical Location & Seq
Reverse (-)
2032007 .. 2033053
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g02640.2

Sequence Viewer

Length: 840 bp
ATGTTTCATCTTGATCAGTGTCAAAATAGCCCTAAAAATCACCTCTATCGAACCCACCATGTTCGGAGCAGCGCCAATCATGATAGCGCAGAAGAAAACGATTTTGATTTTTGGAAACAAGCACATACCGATGAAGACTTTGGCTGTTACTCACCGGTAACATGGGAAACTAACACGTTGAGATCAAACATGAAAGACGACGAGTCTTCTCCTTTGCTCCCATACAACCATCATTATAGCATTCCTTGTCCAACGCCGTCAAGAGAAGCAATAATTCTTCAAAGTAGGAAGGACCTTATGGAAATGATCGAAGACATACCCGAGTCATGTTACGAAATTTCTCTAAAAGATTTTCTCGATGAGCAACAAAGTTCGCAGGGAGTTAAAGAAGAAACCGATGTCCAAGAGACGAGTTTTGATTTTCAAGTTGAACCCCAAGTCAGGAAGCAAAAGAGAAAAACGCAGAAAAGCTATAACACGACGCGCCAGATATCAAGGTCTTCAAGCATGGAGAGTGAAATTTTCTTGATTAAGGTGTTCTTTCCAACTTTTCTAGGTTCAAAGAAGAAAAAAAAAGCACCTGAGAATCGCTCGAAAGTTTCCCCAAGGCCGTCAGCTGGGGGACCTGAGAACCACAATGATTGGTCTAAGATCCGTAAGTTTTTCCTAAATAAAAAGAGTGGCACAAGTTGCAGTAGCGGGAGTACTAGTAGTAGCAGCAACGGCAGCACAAGAAGGTCTGTGACATGCAGGTCTTCCGGTAGCAATATCTTAACTGGTTGCTGGTTCTTCTGCAGCAAGAAAAGCAAAAGCAAGAGACAAAGGGGATTAGTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

32.01

Weight (kDa)

9.02

Isoelectric Point (pI)

69.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017231)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24530
prunus_persica Prupe.4G272900_v2.0.a1
pyrus_communis pycom14g02640
rosa_chinensis RchiOBHm_Chr2g0121941
rosa_laevigata RLG00000018635
rosa_multiflora Rmu_sc0003880.1_g000022
rosa_roxburghii Rroxscaffold_2G00122200
rosa_rugosa Rorug02G0234900
rosa_samantha Rh2AG292000 Rh2BG302200 Rh2CG281000
rosa_wichuraiana Rw2G023410 Rw2G023430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 751
Acc36I ACCTGC 1 cut(s) 741
AccII CGCG 1 cut(s) 484
AciI CCGC 1 cut(s) 699
AclWI GGATC 1 cut(s) 646
AcsI RAATTY 2 cut(s) 336, 519
AfaI GTAC 1 cut(s) 706
AfiI CCNNNNNNNGG 2 cut(s) 441, 617
AflIII ACRYGT 1 cut(s) 174
AgeI ACCGGT 1 cut(s) 154
AgsI TTSAA 5 cut(s) 281, 425, 431, 504, 561
AhdI GACNNNNNGTC 1 cut(s) 202
AhlI ACTAGT 1 cut(s) 707
AluBI AGCT 2 cut(s) 471, 617
AluI AGCT 2 cut(s) 471, 617
Alw26I GTCTC 2 cut(s) 401, 811
AlwI GGATC 1 cut(s) 646
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 1 cut(s) 608
ApeKI GCWGC 4 cut(s) 69, 717, 726, 795
ApoI RAATTY 2 cut(s) 336, 519
AsiGI ACCGGT 1 cut(s) 154
AspLEI GCGC 3 cut(s) 74, 89, 486
AspS9I GGNCC 2 cut(s) 292, 623
AsuHPI GGTGA 2 cut(s) 32, 144
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 2 cut(s) 292, 623
BbsI GAAGAC 5 cut(s) 141, 198, 318, 492, 747
BbvI GCAGC 4 cut(s) 81, 729, 738, 807
BccI CCATC 1 cut(s) 237
BceAI ACGGC 3 cut(s) 241, 595, 739
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 2 cut(s) 401, 811
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 2 cut(s) 554, 708
BfmI CTRYAG 1 cut(s) 793
BfoI RGCGCY 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 741
BisI GCNGC 4 cut(s) 70, 718, 727, 796
BlsI GCNGC 4 cut(s) 71, 719, 728, 797
BmcAI AGTACT 1 cut(s) 706
Bme18I GGWCC 2 cut(s) 292, 623
BmeRI GACNNNNNGTC 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 292, 623
BmiI GGNNCC 1 cut(s) 624
BpiI GAAGAC 5 cut(s) 141, 198, 318, 492, 747
BplI GAGNNNNNCTC 2 cut(s) 575, 607
BsaJI CCNNGG 1 cut(s) 605
BsaWI WCCGGW 2 cut(s) 154, 758
BsaXI ACNNNNNCTCC 2 cut(s) 694, 724
Bsc4I CCNNNNNNNGG 2 cut(s) 441, 617
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 781
BseDI CCNNGG 1 cut(s) 605
BseLI CCNNNNNNNGG 2 cut(s) 441, 617
BseMII CTCAG 2 cut(s) 573, 618
BseNI ACTGG 1 cut(s) 781
BseXI GCAGC 4 cut(s) 81, 729, 738, 807
BseYI CCCAGC 1 cut(s) 617
Bsh1236I CGCG 1 cut(s) 484
BshFI GGCC 1 cut(s) 610
BshTI ACCGGT 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 2 cut(s) 155, 759
BslFI GGGAC 1 cut(s) 636
BslI CCNNNNNNNGG 2 cut(s) 441, 617
BsmAI GTCTC 2 cut(s) 401, 811
BsmBI CGTCTC 1 cut(s) 401
BsmFI GGGAC 1 cut(s) 636
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 1 cut(s) 610
BsoBI CYCGRG 1 cut(s) 320
Bsp143I GATC 4 cut(s) 13, 182, 306, 651
BspACI CCGC 1 cut(s) 699
BspANI GGCC 1 cut(s) 610
BspCNI CTCAG 2 cut(s) 574, 619
BspFNI CGCG 1 cut(s) 484
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 624
BspMAI CTGCAG 1 cut(s) 797
BspMI ACCTGC 1 cut(s) 741
BspPI GGATC 1 cut(s) 646
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 1 cut(s) 781
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 605
BssMI GATC 4 cut(s) 13, 182, 306, 651
BssT1I CCWWGG 1 cut(s) 605
BstAPI GCANNNNNTGC 1 cut(s) 690
BstDEI CTNAG 3 cut(s) 582, 627, 648
BstFNI CGCG 1 cut(s) 484
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 3 cut(s) 74, 89, 486
BstKTI GATC 4 cut(s) 16, 185, 309, 654
BstMAI GTCTC 2 cut(s) 401, 811
BstMBI GATC 4 cut(s) 13, 182, 306, 651
BstMWI GCNNNNNNNGC 4 cut(s) 690, 723, 726, 804
BstNSI RCATGY 1 cut(s) 750
BstSFI CTRYAG 1 cut(s) 793
BstUI CGCG 1 cut(s) 484
BstV1I GCAGC 4 cut(s) 81, 729, 738, 807
BstV2I GAAGAC 5 cut(s) 141, 198, 318, 492, 747
BstX2I RGATCY 1 cut(s) 651
BstYI RGATCY 1 cut(s) 651
BsuRI GGCC 1 cut(s) 610
BtsIMutI CAGTG 1 cut(s) 23
BveI ACCTGC 1 cut(s) 741
CciI TCATGA 1 cut(s) 79
CfoI GCGC 3 cut(s) 74, 89, 486
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 292, 623
CseI GACGC 1 cut(s) 490
Csp6I GTAC 1 cut(s) 705
CspAI ACCGGT 1 cut(s) 154
CspCI CAANNNNNGTGG 2 cut(s) 623, 658
CviAII CATG 7 cut(s) 59, 80, 162, 190, 327, 508, 747
CviJI RGCY 5 cut(s) 30, 144, 471, 610, 617
CviKI_1 RGCY 5 cut(s) 30, 144, 471, 610, 617
CviQI GTAC 1 cut(s) 705
DdeI CTNAG 3 cut(s) 582, 627, 648
DpnI GATC 4 cut(s) 15, 184, 308, 653
DpnII GATC 4 cut(s) 13, 182, 306, 651
DrdI GACNNNNNNGTC 1 cut(s) 751
DriI GACNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 751
Eam1105I GACNNNNNGTC 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 605
Eco32I GATATC 1 cut(s) 492
Eco47I GGWCC 2 cut(s) 292, 623
Eco88I CYCGRG 1 cut(s) 320
EcoO109I RGGNCCY 2 cut(s) 292, 623
EcoRV GATATC 1 cut(s) 492
EcoT14I CCWWGG 1 cut(s) 605
ErhI CCWWGG 1 cut(s) 605
Esp3I CGTCTC 1 cut(s) 401
FaeI CATG 7 cut(s) 62, 83, 165, 193, 330, 511, 750
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FaqI GGGAC 1 cut(s) 636
FatI CATG 7 cut(s) 58, 79, 161, 189, 326, 507, 746
FauI CCCGC 1 cut(s) 692
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 4 cut(s) 70, 718, 727, 796
Fsp4HI GCNGC 4 cut(s) 70, 718, 727, 796
FspBI CTAG 2 cut(s) 554, 708
GlaI GCGC 3 cut(s) 73, 88, 485
GluI GCNGC 4 cut(s) 70, 718, 727, 796
GsaI CCCAGC 1 cut(s) 621
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 1 cut(s) 610
HapII CCGG 2 cut(s) 155, 759
HgaI GACGC 1 cut(s) 490
HhaI GCGC 3 cut(s) 74, 89, 486
Hin1II CATG 7 cut(s) 62, 83, 165, 193, 330, 511, 750
Hin6I GCGC 3 cut(s) 72, 87, 484
HinP1I GCGC 3 cut(s) 72, 87, 484
HinfI GANTC 3 cut(s) 203, 323, 586
HpaII CCGG 2 cut(s) 155, 759
HphI GGTGA 2 cut(s) 32, 144
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 6 cut(s) 11, 80, 261, 356, 442, 526
Hpy99I CGWCG 2 cut(s) 203, 484
HpyAV CCTTC 2 cut(s) 283, 729
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 693, 750, 795
HpyF10VI GCNNNNNNNGC 4 cut(s) 690, 723, 726, 804
HpyF3I CTNAG 3 cut(s) 582, 627, 648
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 7 cut(s) 62, 83, 165, 193, 330, 511, 750
HspAI GCGC 3 cut(s) 72, 87, 484
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 4 cut(s) 13, 182, 306, 651
LmnI GCTCC 2 cut(s) 66, 222
Lsp1109I GCAGC 4 cut(s) 81, 729, 738, 807
MaeI CTAG 2 cut(s) 554, 708
MaeII ACGT 1 cut(s) 176
MaeIII GTNAC 4 cut(s) 146, 157, 329, 742
MalI GATC 4 cut(s) 15, 184, 308, 653
MboI GATC 4 cut(s) 13, 182, 306, 651
MflI RGATCY 1 cut(s) 651
MluCI AATT 3 cut(s) 273, 336, 519
MlyI GAGTC 2 cut(s) 212, 332
MmeI TCCRAC 2 cut(s) 275, 569
MnlI CCTC 1 cut(s) 53
MseI TTAA 3 cut(s) 384, 531, 773
MslI CAYNNNNRTG 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 617
MspI CCGG 2 cut(s) 155, 759
Mva1269I GAATGC 1 cut(s) 240
MvnI CGCG 1 cut(s) 484
MwoI GCNNNNNNNGC 4 cut(s) 690, 723, 726, 804
NdeII GATC 4 cut(s) 13, 182, 306, 651
NlaIII CATG 7 cut(s) 62, 83, 165, 193, 330, 511, 750
NlaIV GGNNCC 1 cut(s) 624
NmuCI GTSAC 1 cut(s) 742
NspI RCATGY 1 cut(s) 750
PagI TCATGA 1 cut(s) 79
PctI GAATGC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 586
PinAI ACCGGT 1 cut(s) 154
PkrI GCNGC 4 cut(s) 71, 719, 728, 797
PleI GAGTC 2 cut(s) 211, 331
PpsI GAGTC 2 cut(s) 211, 331
PpuMI RGGWCCY 2 cut(s) 292, 623
Psp5II RGGWCCY 2 cut(s) 292, 623
PspFI CCCAGC 1 cut(s) 617
PspN4I GGNNCC 1 cut(s) 624
PspPI GGNCC 2 cut(s) 292, 623
PspPPI RGGWCCY 2 cut(s) 292, 623
PstI CTGCAG 1 cut(s) 797
PsuI RGATCY 1 cut(s) 651
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 1 cut(s) 706
RsaNI GTAC 1 cut(s) 705
RseI CAYNNNNRTG 1 cut(s) 129
SaqAI TTAA 3 cut(s) 384, 531, 773
SatI GCNGC 4 cut(s) 70, 718, 727, 796
Sau3AI GATC 4 cut(s) 13, 182, 306, 651
Sau96I GGNCC 2 cut(s) 292, 623
ScaI AGTACT 1 cut(s) 706
SchI GAGTC 2 cut(s) 212, 332
SfcI CTRYAG 1 cut(s) 793
SinI GGWCC 2 cut(s) 292, 623
SmiMI CAYNNNNRTG 1 cut(s) 129
SpeI ACTAGT 1 cut(s) 707
Sse9I AATT 3 cut(s) 273, 336, 519
SsiI CCGC 1 cut(s) 699
SspMI CTAG 2 cut(s) 554, 708
StyI CCWWGG 1 cut(s) 605
TaiI ACGT 1 cut(s) 179
TaqI TCGA 4 cut(s) 49, 309, 357, 593
TasI AATT 3 cut(s) 273, 336, 519
TatI WGTACW 1 cut(s) 704
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 3 cut(s) 384, 531, 773
Tru9I TTAA 3 cut(s) 384, 531, 773
TscAI CASTG 1 cut(s) 23
TseFI GTSAC 1 cut(s) 742
TseI GCWGC 4 cut(s) 69, 717, 726, 795
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 2 cut(s) 147, 206
TspGWI ACGGA 1 cut(s) 644
TspRI CASTG 1 cut(s) 23
VpaK11BI GGWCC 2 cut(s) 292, 623
XapI RAATTY 2 cut(s) 336, 519
XceI RCATGY 1 cut(s) 750
XspI CTAG 2 cut(s) 554, 708
ZrmI AGTACT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.