Rw2G023430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0017231
Physical Location & Seq
Forward (+)
34152502 .. 34153663
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G023430.1

Sequence Viewer

Length: 735 bp
ATGCTTGATCAGTGCCAAAAGTTCTCTAGAAATCAGCTCTATGTAACCTGCCATGTCCACAGCCGACACGAGAGTGCAGAAGACAAAGAGTTCGGTTTCTGTAGTGCATGGGAGTTTCAAGCTCAAGCATGTATTGAAGCAGATCTCGGTGCTCACTCGCCACGGTTATGGGAGACAAACACCAAATACGAGTCTTCTCCTTTGCTCCCCCAAAACCATCACTACAGTAATCTTTCTCCCACATCACGCAGACGGGTGATTCTTGAAAGCAAGAGTCAACTTATGCAAATGATTCAAAACATACCAGAGTCATATCATGAACTTTCTCTGAAAGATATTGTTGATGAGCAACAAGGTATGCAGAAGGCTGGAGAAGGCACTGATGTTGAAGAGAAGAGTTTTGACTTCAAGACTCAAGCTCAAATTAAGAAGCAGGAGAAGAAAATAACATACAAGACTAGACAGATATCGCGGACTTCAAGTATGGAAAGCGAAACTTTCCTAATCAAGATGTTCTTTCCAACTTTTCTAGGATCAAAGAAGAAAGCAAAAGTAGCTGGGAATCGCTCAAAATTTTCCCCAAGGCCATCATTTGAAGAACCTGAGAACCATAAAGATTTGTGTGTTGAAGGCACAAGCAGCGGAAGAAGGTTTTCTGAGGACGATACCTTACCTGGTTGCTGGACCCTCTTCCGGAGCAAGAGAGGCAAAAGCAAAAGACTAAGGGCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

28.22

Weight (kDa)

9.0

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017231)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24530
prunus_persica Prupe.4G272900_v2.0.a1
pyrus_communis pycom14g02640
rosa_chinensis RchiOBHm_Chr2g0121941
rosa_laevigata RLG00000018635
rosa_multiflora Rmu_sc0003880.1_g000022
rosa_roxburghii Rroxscaffold_2G00122200
rosa_rugosa Rorug02G0234900
rosa_samantha Rh2AG292000 Rh2BG302200 Rh2CG281000
rosa_wichuraiana Rw2G023410 Rw2G023430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 56
AccII CGCG 1 cut(s) 472
AccIII TCCGGA 1 cut(s) 693
AciI CCGC 2 cut(s) 472, 642
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 1 cut(s) 572
AfiI CCNNNNNNNGG 1 cut(s) 693
AgsI TTSAA 9 cut(s) 119, 137, 266, 296, 389, 409, 480, 596, 629
AjnI CCWGG 1 cut(s) 673
AleI CACNNNNGTG 1 cut(s) 72
AluBI AGCT 4 cut(s) 37, 122, 419, 557
AluI AGCT 4 cut(s) 37, 122, 419, 557
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 541
Aor13HI TCCGGA 1 cut(s) 693
AoxI GGCC 1 cut(s) 584
ApeKI GCWGC 1 cut(s) 639
ApoI RAATTY 1 cut(s) 572
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp700I GAANNNNTTC 1 cut(s) 652
AspS9I GGNCC 1 cut(s) 684
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 684
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 87, 186
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 651
BccI CCATC 2 cut(s) 225, 595
BciT130I CCWGG 1 cut(s) 675
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 3 cut(s) 27, 459, 530
BfmI CTRYAG 2 cut(s) 100, 223
BfuAI ACCTGC 1 cut(s) 56
BglII AGATCT 1 cut(s) 142
BisI GCNGC 1 cut(s) 640
BlsI GCNGC 1 cut(s) 641
Bme1390I CCNGG 1 cut(s) 675
Bme18I GGWCC 1 cut(s) 684
BmgT120I GGNCC 1 cut(s) 684
BmiI GGNNCC 1 cut(s) 686
BmrFI CCNGG 1 cut(s) 675
BpiI GAAGAC 2 cut(s) 87, 186
BpmI CTGGAG 1 cut(s) 390
BpuEI CTTGAG 2 cut(s) 108, 399
BsaJI CCNNGG 2 cut(s) 161, 581
BsaWI WCCGGW 1 cut(s) 693
Bsc4I CCNNNNNNNGG 1 cut(s) 693
BseAI TCCGGA 1 cut(s) 693
BseBI CCWGG 1 cut(s) 675
BseDI CCNNGG 2 cut(s) 161, 581
BseLI CCNNNNNNNGG 1 cut(s) 693
BseMII CTCAG 2 cut(s) 594, 648
BseXI GCAGC 1 cut(s) 651
BseYI CCCAGC 1 cut(s) 557
BsgI GTGCAG 1 cut(s) 96
Bsh1236I CGCG 1 cut(s) 472
BshFI GGCC 1 cut(s) 586
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 694
BslI CCNNNNNNNGG 1 cut(s) 693
BsmAI GTCTC 1 cut(s) 167
BsnI GGCC 1 cut(s) 586
Bsp1286I GDGCHC 1 cut(s) 154
Bsp13I TCCGGA 1 cut(s) 693
Bsp143I GATC 3 cut(s) 7, 142, 533
BspACI CCGC 2 cut(s) 472, 642
BspANI GGCC 1 cut(s) 586
BspCNI CTCAG 2 cut(s) 595, 649
BspEI TCCGGA 1 cut(s) 693
BspFNI CGCG 1 cut(s) 472
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 686
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 1 cut(s) 541
BssECI CCNNGG 2 cut(s) 161, 581
BssMI GATC 3 cut(s) 7, 142, 533
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 581
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 675
Bst4CI ACNGT 2 cut(s) 165, 227
Bst6I CTCTTC 3 cut(s) 384, 389, 695
BstC8I GCNNGC 1 cut(s) 730
BstDEI CTNAG 3 cut(s) 603, 657, 722
BstDSI CCRYGG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 472
BstKTI GATC 3 cut(s) 10, 145, 536
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 3 cut(s) 7, 142, 533
BstMWI GCNNNNNNNGC 3 cut(s) 554, 639, 705
BstNI CCWGG 1 cut(s) 675
BstNSI RCATGY 2 cut(s) 132, 732
BstSCI CCNGG 1 cut(s) 673
BstSFI CTRYAG 2 cut(s) 100, 223
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 1 cut(s) 651
BstV2I GAAGAC 2 cut(s) 87, 186
BstX2I RGATCY 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 168
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 1 cut(s) 586
BtgI CCRYGG 1 cut(s) 161
BtsIMutI CAGTG 2 cut(s) 17, 378
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 730
CciI TCATGA 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 684
CsiI ACCWGGT 1 cut(s) 673
CviAII CATG 5 cut(s) 53, 108, 129, 317, 729
CviJI RGCY 7 cut(s) 37, 63, 122, 368, 419, 557, 586
CviKI_1 RGCY 7 cut(s) 37, 63, 122, 368, 419, 557, 586
DdeI CTNAG 3 cut(s) 603, 657, 722
DpnI GATC 3 cut(s) 9, 144, 535
DpnII GATC 3 cut(s) 7, 142, 533
Eam1104I CTCTTC 3 cut(s) 384, 389, 695
EarI CTCTTC 3 cut(s) 384, 389, 695
Eco130I CCWWGG 1 cut(s) 581
Eco32I GATATC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 684
EcoRII CCWGG 1 cut(s) 673
EcoRV GATATC 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 5 cut(s) 56, 111, 132, 320, 732
FalI AAGNNNNNCTT 4 cut(s) 481, 513, 500, 532
FatI CATG 5 cut(s) 52, 107, 128, 316, 728
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 640
Fsp4HI GCNGC 1 cut(s) 640
FspBI CTAG 3 cut(s) 27, 459, 530
GluI GCNGC 1 cut(s) 640
GsaI CCCAGC 1 cut(s) 561
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 1 cut(s) 586
HapII CCGG 1 cut(s) 694
Hin1II CATG 5 cut(s) 56, 111, 132, 320, 732
HincII GTYRAC 1 cut(s) 278
HindII GTYRAC 1 cut(s) 278
HinfI GANTC 7 cut(s) 191, 259, 274, 292, 308, 412, 562
HpaII CCGG 1 cut(s) 694
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 58, 278
Hpy188I TCNGA 2 cut(s) 330, 658
Hpy188III TCNNGA 6 cut(s) 27, 263, 317, 409, 508, 694
Hpy8I GTNNAC 2 cut(s) 58, 278
HpyAV CCTTC 4 cut(s) 358, 368, 623, 642
HpyCH4III ACNGT 2 cut(s) 165, 227
HpyCH4V TGCA 4 cut(s) 77, 107, 286, 361
HpyF10VI GCNNNNNNNGC 3 cut(s) 554, 639, 705
HpyF3I CTNAG 3 cut(s) 603, 657, 722
Hsp92II CATG 5 cut(s) 56, 111, 132, 320, 732
Kpn2I TCCGGA 1 cut(s) 693
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 3 cut(s) 7, 142, 533
LmnI GCTCC 2 cut(s) 210, 696
Lsp1109I GCAGC 1 cut(s) 651
MabI ACCWGGT 1 cut(s) 673
MaeI CTAG 3 cut(s) 27, 459, 530
MaeIII GTNAC 1 cut(s) 43
MalI GATC 3 cut(s) 9, 144, 535
MboI GATC 3 cut(s) 7, 142, 533
MboII GAAGA 9 cut(s) 92, 186, 401, 406, 451, 553, 608, 657, 682
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 2 cut(s) 423, 572
MlyI GAGTC 4 cut(s) 200, 283, 317, 406
MmeI TCCRAC 1 cut(s) 545
MnlI CCTC 3 cut(s) 652, 698, 698
MroI TCCGGA 1 cut(s) 693
MroXI GAANNNNTTC 1 cut(s) 652
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 2 cut(s) 72, 166
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 1 cut(s) 694
MspR9I CCNGG 1 cut(s) 675
MvaI CCWGG 1 cut(s) 675
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 3 cut(s) 554, 639, 705
NdeII GATC 3 cut(s) 7, 142, 533
NlaIII CATG 5 cut(s) 56, 111, 132, 320, 732
NlaIV GGNNCC 1 cut(s) 686
NspI RCATGY 2 cut(s) 132, 732
OliI CACNNNNGTG 1 cut(s) 72
PaeI GCATGC 1 cut(s) 732
PagI TCATGA 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 652
PfeI GAWTC 3 cut(s) 259, 292, 562
PkrI GCNGC 1 cut(s) 641
PleI GAGTC 4 cut(s) 199, 282, 316, 406
PpsI GAGTC 4 cut(s) 199, 282, 316, 406
Psp6I CCWGG 1 cut(s) 673
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 1 cut(s) 673
PspN4I GGNNCC 1 cut(s) 686
PspPI GGNCC 1 cut(s) 684
PsuI RGATCY 1 cut(s) 142
RseI CAYNNNNRTG 2 cut(s) 72, 166
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 1 cut(s) 640
Sau3AI GATC 3 cut(s) 7, 142, 533
Sau96I GGNCC 1 cut(s) 684
SchI GAGTC 4 cut(s) 200, 283, 317, 406
ScrFI CCNGG 1 cut(s) 675
SduI GDGCHC 1 cut(s) 154
SexAI ACCWGGT 1 cut(s) 673
SfcI CTRYAG 2 cut(s) 100, 223
SinI GGWCC 1 cut(s) 684
SmiMI CAYNNNNRTG 2 cut(s) 72, 166
SmlI CTYRAG 2 cut(s) 123, 414
SmoI CTYRAG 2 cut(s) 123, 414
SphI GCATGC 1 cut(s) 732
Sse9I AATT 2 cut(s) 423, 572
SsiI CCGC 2 cut(s) 472, 642
SspMI CTAG 3 cut(s) 27, 459, 530
StyD4I CCNGG 1 cut(s) 673
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 2 cut(s) 165, 227
TasI AATT 2 cut(s) 423, 572
TfiI GAWTC 3 cut(s) 259, 292, 562
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 2 cut(s) 17, 385
TseI GCWGC 1 cut(s) 639
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 2 cut(s) 17, 385
VpaK11BI GGWCC 1 cut(s) 684
XapI RAATTY 1 cut(s) 572
XbaI TCTAGA 1 cut(s) 26
XceI RCATGY 2 cut(s) 132, 732
XmnI GAANNNNTTC 1 cut(s) 652
XspI CTAG 3 cut(s) 27, 459, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.