RLG00000018635

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017231
Physical Location & Seq
Forward (+)
33108142 .. 33109510
1369 bp
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UTR
Exon/CDS
Intron
RLM00000018635

Sequence Viewer

Length: 735 bp
ATGCTTGATCAGTGCCAAAAGTTCCCTAGAAATCAGCTGTATGTAACCTGCCATGTCCACAGCAGACACGAGAGTGCAGAAGCCAAAGAGTTCGGTTTCTGTAGTGCATGGAAGTTTCAAGCTCAAGCATGTATTGAAGCAGATCTCGGTGCTCACTCGCCACGGTTATGGGAGACAAACACCAAATACGAGTCTTCTCCTTTGCTCCCCCAAAACCATCACTACAGTGATCTTTCTCCCACGTCGCGCAGACGGGTGATTCTTGAAAGCAAGAGTCAACTTATGCAGATGATTCAAAACATACCAGAGTCATATCATGAACTTTCTCTGAAAGATATTGTTGATGAGCAACAAGGTATGCAGAAGCCTGGAGAAGGCACTGATGTTGAAGAGAAGAGTTTCGACTTCAACACTCAAGCTCAAATTAAGAAGCAGAAGAAGCAAATAACATACAAGACTAGACAGATATCGCGGACTTCAAGTATGGAAAGCGAAACTTTCCTAATCAAGATGTTCTTTCCAACTTTTCTAGGCTCAAAGAAGAAAGCAAAAGTAGCTGGGAATCGCTCAAAAGTTTCCCCAAGGCTATCATTTGAAGAACCTGAGAACCATAAAGATTTGTGTGTTGAAGGCACAAGCAGCGGAAGAAGGTTTTCTGAGGACGATACCTTACCCGGTTGCTGGACCTTCTTCCGGAGCAAGAAAGGCAAAAGCAAAAGACCAAGGGCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

28.15

Weight (kDa)

9.18

Isoelectric Point (pI)

60.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017231)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24530
prunus_persica Prupe.4G272900_v2.0.a1
pyrus_communis pycom14g02640
rosa_chinensis RchiOBHm_Chr2g0121941
rosa_laevigata RLG00000018635
rosa_multiflora Rmu_sc0003880.1_g000022
rosa_roxburghii Rroxscaffold_2G00122200
rosa_rugosa Rorug02G0234900
rosa_samantha Rh2AG292000 Rh2BG302200 Rh2CG281000
rosa_wichuraiana Rw2G023410 Rw2G023430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 56
AccII CGCG 2 cut(s) 247, 472
AccIII TCCGGA 1 cut(s) 693
AciI CCGC 2 cut(s) 472, 642
AfiI CCNNNNNNNGG 3 cut(s) 374, 681, 693
AgsI TTSAA 9 cut(s) 119, 137, 266, 296, 389, 409, 480, 596, 629
AjiI CACGTC 1 cut(s) 243
AjnI CCWGG 1 cut(s) 367
AleI CACNNNNGTG 2 cut(s) 72, 225
AluBI AGCT 4 cut(s) 37, 122, 419, 557
AluI AGCT 4 cut(s) 37, 122, 419, 557
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 167
Aor13HI TCCGGA 1 cut(s) 693
ApeKI GCWGC 1 cut(s) 639
Asp700I GAANNNNTTC 2 cut(s) 398, 652
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 684
AsuC2I CCSGG 1 cut(s) 675
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 684
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 651
BccI CCATC 1 cut(s) 225
BciT130I CCWGG 1 cut(s) 369
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 675
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 3 cut(s) 27, 459, 530
BfmI CTRYAG 2 cut(s) 100, 223
BfuAI ACCTGC 1 cut(s) 56
BglII AGATCT 1 cut(s) 142
BisI GCNGC 1 cut(s) 640
BlsI GCNGC 1 cut(s) 641
Bme1390I CCNGG 2 cut(s) 369, 675
Bme18I GGWCC 1 cut(s) 684
BmgBI CACGTC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 684
BmrFI CCNGG 2 cut(s) 369, 675
BpiI GAAGAC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 390
BpuEI CTTGAG 2 cut(s) 108, 399
BpuMI CCSGG 1 cut(s) 675
BsaJI CCNNGG 3 cut(s) 161, 581, 722
BsaWI WCCGGW 1 cut(s) 693
Bsc4I CCNNNNNNNGG 3 cut(s) 374, 681, 693
BseAI TCCGGA 1 cut(s) 693
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 3 cut(s) 161, 581, 722
BseLI CCNNNNNNNGG 3 cut(s) 374, 681, 693
BseMII CTCAG 2 cut(s) 594, 648
BseXI GCAGC 1 cut(s) 651
BseYI CCCAGC 1 cut(s) 557
BsgI GTGCAG 1 cut(s) 96
Bsh1236I CGCG 2 cut(s) 247, 472
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 675, 694
BslI CCNNNNNNNGG 3 cut(s) 374, 681, 693
BsmAI GTCTC 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 154
Bsp13I TCCGGA 1 cut(s) 693
Bsp143I GATC 3 cut(s) 7, 142, 229
BspACI CCGC 2 cut(s) 472, 642
BspCNI CTCAG 2 cut(s) 595, 649
BspEI TCCGGA 1 cut(s) 693
BspFNI CGCG 2 cut(s) 247, 472
BspHI TCATGA 1 cut(s) 316
BspMI ACCTGC 1 cut(s) 56
BssECI CCNNGG 3 cut(s) 161, 581, 722
BssMI GATC 3 cut(s) 7, 142, 229
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 2 cut(s) 581, 722
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 2 cut(s) 165, 227
Bst6I CTCTTC 2 cut(s) 384, 389
BstC8I GCNNGC 1 cut(s) 730
BstDEI CTNAG 2 cut(s) 603, 657
BstDSI CCRYGG 1 cut(s) 161
BstENI CCTNNNNNAGG 1 cut(s) 372
BstFNI CGCG 2 cut(s) 247, 472
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 3 cut(s) 10, 145, 232
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 3 cut(s) 7, 142, 229
BstMWI GCNNNNNNNGC 4 cut(s) 439, 554, 639, 705
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 2 cut(s) 132, 732
BstSCI CCNGG 2 cut(s) 367, 673
BstSFI CTRYAG 2 cut(s) 100, 223
BstUI CGCG 2 cut(s) 247, 472
BstV1I GCAGC 1 cut(s) 651
BstV2I GAAGAC 1 cut(s) 186
BstX2I RGATCY 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 168
BstYI RGATCY 1 cut(s) 142
BtgI CCRYGG 1 cut(s) 161
BtrI CACGTC 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 17, 232, 378
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 730
CciI TCATGA 1 cut(s) 316
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 684
CviAII CATG 5 cut(s) 53, 108, 129, 317, 729
CviJI RGCY 8 cut(s) 37, 83, 122, 367, 419, 534, 557, 586
CviKI_1 RGCY 8 cut(s) 37, 83, 122, 367, 419, 534, 557, 586
DdeI CTNAG 2 cut(s) 603, 657
DpnI GATC 3 cut(s) 9, 144, 231
DpnII GATC 3 cut(s) 7, 142, 229
Eam1104I CTCTTC 2 cut(s) 384, 389
EarI CTCTTC 2 cut(s) 384, 389
Eco130I CCWWGG 2 cut(s) 581, 722
Eco32I GATATC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 684
EcoNI CCTNNNNNAGG 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 367
EcoRV GATATC 1 cut(s) 468
EcoT14I CCWWGG 2 cut(s) 581, 722
ErhI CCWWGG 2 cut(s) 581, 722
FaeI CATG 5 cut(s) 56, 111, 132, 320, 732
FalI AAGNNNNNCTT 4 cut(s) 481, 513, 500, 532
FatI CATG 5 cut(s) 52, 107, 128, 316, 728
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 640
Fsp4HI GCNGC 1 cut(s) 640
FspBI CTAG 3 cut(s) 27, 459, 530
GlaI GCGC 1 cut(s) 248
GluI GCNGC 1 cut(s) 640
GsaI CCCAGC 1 cut(s) 561
GsuI CTGGAG 1 cut(s) 390
HapII CCGG 2 cut(s) 675, 694
HhaI GCGC 1 cut(s) 249
Hin1II CATG 5 cut(s) 56, 111, 132, 320, 732
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 1 cut(s) 278
HindII GTYRAC 1 cut(s) 278
HinfI GANTC 6 cut(s) 191, 259, 274, 292, 308, 562
HpaII CCGG 2 cut(s) 675, 694
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 58, 278
Hpy188I TCNGA 2 cut(s) 330, 658
Hpy188III TCNNGA 4 cut(s) 263, 317, 508, 694
Hpy8I GTNNAC 2 cut(s) 58, 278
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 4 cut(s) 368, 623, 642, 697
HpyCH4III ACNGT 2 cut(s) 165, 227
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 4 cut(s) 77, 107, 286, 361
HpyF10VI GCNNNNNNNGC 4 cut(s) 439, 554, 639, 705
HpyF3I CTNAG 2 cut(s) 603, 657
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 5 cut(s) 56, 111, 132, 320, 732
HspAI GCGC 1 cut(s) 247
Kpn2I TCCGGA 1 cut(s) 693
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 3 cut(s) 7, 142, 229
LmnI GCTCC 2 cut(s) 210, 696
LpnPI CCDG 9 cut(s) 61, 318, 354, 381, 543, 615, 667, 688, 707
Lsp1109I GCAGC 1 cut(s) 651
MaeI CTAG 3 cut(s) 27, 459, 530
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 43
MalI GATC 3 cut(s) 9, 144, 231
MboI GATC 3 cut(s) 7, 142, 229
MboII GAAGA 8 cut(s) 186, 401, 406, 448, 553, 608, 657, 682
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 423
MlyI GAGTC 3 cut(s) 200, 283, 317
MmeI TCCRAC 1 cut(s) 545
MnlI CCTC 1 cut(s) 652
MroI TCCGGA 1 cut(s) 693
MroXI GAANNNNTTC 2 cut(s) 398, 652
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 3 cut(s) 72, 166, 225
MspA1I CMGCKG 2 cut(s) 37, 642
MspI CCGG 2 cut(s) 675, 694
MspR9I CCNGG 2 cut(s) 369, 675
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 2 cut(s) 247, 472
MwoI GCNNNNNNNGC 4 cut(s) 439, 554, 639, 705
NciI CCSGG 1 cut(s) 675
NdeII GATC 3 cut(s) 7, 142, 229
NlaIII CATG 5 cut(s) 56, 111, 132, 320, 732
NspI RCATGY 2 cut(s) 132, 732
OliI CACNNNNGTG 2 cut(s) 72, 225
PaeI GCATGC 1 cut(s) 732
PagI TCATGA 1 cut(s) 316
PdmI GAANNNNTTC 2 cut(s) 398, 652
PfeI GAWTC 3 cut(s) 259, 292, 562
PkrI GCNGC 1 cut(s) 641
PleI GAGTC 3 cut(s) 199, 282, 316
PpsI GAGTC 3 cut(s) 199, 282, 316
Psp6I CCWGG 1 cut(s) 367
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 1 cut(s) 367
PspPI GGNCC 1 cut(s) 684
PsuI RGATCY 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 37
RseI CAYNNNNRTG 3 cut(s) 72, 166, 225
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 1 cut(s) 640
Sau3AI GATC 3 cut(s) 7, 142, 229
Sau96I GGNCC 1 cut(s) 684
SchI GAGTC 3 cut(s) 200, 283, 317
ScrFI CCNGG 2 cut(s) 369, 675
SduI GDGCHC 1 cut(s) 154
SfcI CTRYAG 2 cut(s) 100, 223
SinI GGWCC 1 cut(s) 684
SmiMI CAYNNNNRTG 3 cut(s) 72, 166, 225
SmlI CTYRAG 2 cut(s) 123, 414
SmoI CTYRAG 2 cut(s) 123, 414
SphI GCATGC 1 cut(s) 732
Sse9I AATT 1 cut(s) 423
SsiI CCGC 2 cut(s) 472, 642
SspMI CTAG 3 cut(s) 27, 459, 530
StyD4I CCNGG 2 cut(s) 367, 673
StyI CCWWGG 2 cut(s) 581, 722
TaaI ACNGT 2 cut(s) 165, 227
TaiI ACGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 402
TasI AATT 1 cut(s) 423
TfiI GAWTC 3 cut(s) 259, 292, 562
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 3 cut(s) 17, 232, 385
TseI GCWGC 1 cut(s) 639
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 3 cut(s) 17, 232, 385
VpaK11BI GGWCC 1 cut(s) 684
XagI CCTNNNNNAGG 1 cut(s) 372
XceI RCATGY 2 cut(s) 132, 732
XmnI GAANNNNTTC 2 cut(s) 398, 652
XspI CTAG 3 cut(s) 27, 459, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.