FvH4_1g26110

AarF domain-containing protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0011021
Physical Location & Seq
Forward (+)
17981575 .. 17990450
8876 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26110.t3

Sequence Viewer

Length: 1209 bp
ATGGTAGCGAGCGGGAGGAAAGCCAAGGACATTGGGAGACTGGCGCAGGGCTTCTCTCTTATCGCCAAGGAATTCGCCAAGCGATCTCCGACTCTCCAGAGCGCCAAGAACGGCGATTTCCAAGCCCTCCTCAAAAACGCCGTCGTTTCCGCCACCGACCTCTCCGGCCTCACCAAAGGCACCCTCCACTCCCAATCCACCCACAATAATCCTTCTAACCCTAAAAACGCCGATTCCGCTGCTAACAAACCCGATTCCGTCGTCTACTTCACCCACGACGAACCTCCTCCTCCTCAGCCGCAGCCTCAACCGCCGCCGGAAAACAATGCCGCGTTGTCCGCGGTGGAGGTCGAGGTGATTGGTTCCAGTGCTCAACAACAATTAGAACCCCAAACGCAATCGCAATCACCGGAACCACAACCTCAGCCGCCGCCGAGGCGGAAGCCGAGAGAGAGACGAGTTCCGTCCACTCCTTTCTCCAGAGCGCTGGGGTTTGCTGGTCTTGGAGCTGGGCTTGCCTGGGGAACGCTTCAGGAGTCTACCAAGAGACTCATTTACGGCACGCCGCCGACCTCACCAGGCAACCAATCTGCTGTTTCTCCATTTTTGTCTCCACAGAATGCAGAACGCTTGGCTCTTGCGCTTTGTAGAATGCGAGGAGCTGCTCTCAAATTGGGACAGATGTTGAGCATTCAGGACGAATCGCTTGTGCCCGCTCCTATATTGGCAGCTCTCGATATTGTCCGTCAAGGTGCAGATGTGATGCCACGGGCCCAGCTCAATCAGGTTTTGGATGCTGAGTTGGGACCTGGTTGGTCATCGAAATTAACAAGTTTCGATTATGAGCCTTTGGCTTCTGCAAGTATAGGCCAGGTGCACCGAGCTGTCACAAAGGATGGCATGGATGCTGCTATTAAAATTCAGTACCCTGGTGTAGCAGATAGCATTAGCAGTGACCTCGAGAATGTTAAGCTTCTTCTAGATTACACTAATCTAATTCCAAAAGGACTTTACCTTGAAAGTGCTATGAAGGTGGCCAAAGAAGAATTATCTCGTGAATGCAATTACGAATTGGAGGCAGAAAGTCAAAAACGGTTTCGTGCTTTGCTCTCTGATGCACAAGGGTTCTATGTTCCATTGGTTGTGGATGATATATCAAGCAAAAGAGTTCTAACTACTGAGCTTGTTTCTGGCAAGAATACCTATTGA

Protein Analysis

403

Amino Acids

43.24

Weight (kDa)

7.71

Isoelectric Point (pI)

52.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 248 - 478 1.1e-69 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011021)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01660
fragaria_vesca FvH4_1g26110 FvH4_1g26110 FvH4_1g26110
malus_domestica MD09G1291600.v1.1
prunus_persica Prupe.3G001200_v2.0.a1
pyrus_communis pycom09g19950 pycom17g28190
rosa_chinensis RchiOBHm_Chr3g0485611
rosa_laevigata RLG00000023142
rosa_multiflora Rmu_co7961244.1_g000001 Rmu_sc0001272.1_g000006
rosa_roxburghii Rroxscaffold_6G00396590 Rroxscaffold_6G00396900
rosa_rugosa Rorug03G0220200
rosa_samantha Rh3AG268700 Rh3BG304400 Rh3CG302900 Rh3DG299300
rosa_wichuraiana Rw3G023970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 179
AccBSI CCGCTC 2 cut(s) 12, 716
AccI GTMKAC 2 cut(s) 264, 539
AccII CGCG 2 cut(s) 332, 341
AcoI YGGCCR 1 cut(s) 1035
AcsI RAATTY 2 cut(s) 71, 918
AcuI CTGAAG 1 cut(s) 515
AfaI GTAC 1 cut(s) 926
AfeI AGCGCT 1 cut(s) 486
AgsI TTSAA 1 cut(s) 1019
AjnI CCWGG 5 cut(s) 518, 577, 808, 870, 928
AluBI AGCT 7 cut(s) 509, 662, 731, 778, 884, 973, 1183
AluI AGCT 7 cut(s) 509, 662, 731, 778, 884, 973, 1183
Alw21I GWGCWC 2 cut(s) 373, 879
Alw26I GTCTC 4 cut(s) 31, 448, 541, 615
Alw44I GTGCAC 1 cut(s) 875
Ama87I CYCGRG 1 cut(s) 959
Aor51HI AGCGCT 1 cut(s) 486
AoxI GGCC 4 cut(s) 166, 771, 868, 1035
ApaI GGGCCC 1 cut(s) 775
ApaLI GTGCAC 1 cut(s) 875
ApeKI GCWGC 5 cut(s) 239, 301, 662, 728, 908
ApoI RAATTY 2 cut(s) 71, 918
ArsI GACNNNNNNTTYG 2 cut(s) 126, 158
AspLEI GCGC 4 cut(s) 46, 104, 487, 643
AspS9I GGNCC 3 cut(s) 771, 772, 806
AsuHPI GGTGA 5 cut(s) 163, 262, 367, 399, 567
AvaI CYCGRG 1 cut(s) 959
AvaII GGWCC 1 cut(s) 806
BaeGI GKGCMC 3 cut(s) 714, 775, 879
BalI TGGCCA 1 cut(s) 1037
BanI GGYRCC 1 cut(s) 179
BanII GRGCYC 1 cut(s) 775
BauI CACGAG 1 cut(s) 1053
Bbv12I GWGCWC 2 cut(s) 373, 879
BbvCI CCTCAGC 2 cut(s) 294, 423
BbvI GCAGC 5 cut(s) 226, 313, 649, 740, 895
BccI CCATC 1 cut(s) 890
BceAI ACGGC 3 cut(s) 125, 127, 574
BcgI CGANNNNNNTGC 4 cut(s) 221, 255, 940, 974
BciT130I CCWGG 5 cut(s) 520, 579, 810, 872, 930
BcoDI GTCTC 4 cut(s) 31, 448, 541, 615
BfaI CTAG 1 cut(s) 980
BfoI RGCGCY 2 cut(s) 105, 488
BglI GCCNNNNNGGC 1 cut(s) 436
Bme1390I CCNGG 5 cut(s) 520, 579, 810, 872, 930
Bme18I GGWCC 1 cut(s) 806
BmeT110I CYCGRG 1 cut(s) 959
BmgT120I GGNCC 3 cut(s) 771, 772, 806
BmiI GGNNCC 5 cut(s) 181, 364, 414, 773, 807
BmrFI CCNGG 5 cut(s) 520, 579, 810, 872, 930
BmsI GCATC 4 cut(s) 753, 784, 895, 1105
BplI GAGNNNNNCTC 2 cut(s) 651, 683
BpmI CTGGAG 2 cut(s) 80, 463
Bpu10I CCTNAGC 2 cut(s) 294, 423
BsaJI CCNNGG 7 cut(s) 24, 66, 339, 434, 519, 767, 928
BsaWI WCCGGW 1 cut(s) 409
Bse1I ACTGG 2 cut(s) 45, 366
BseBI CCWGG 5 cut(s) 520, 579, 810, 872, 930
BseDI CCNNGG 7 cut(s) 24, 66, 339, 434, 519, 767, 928
BseGI GGATG 4 cut(s) 799, 901, 910, 1153
BseMII CTCAG 4 cut(s) 308, 437, 789, 1170
BseNI ACTGG 2 cut(s) 45, 366
BseRI GAGGAG 5 cut(s) 119, 276, 279, 282, 672
BseSI GKGCMC 3 cut(s) 714, 775, 879
BseXI GCAGC 5 cut(s) 226, 313, 649, 740, 895
BseYI CCCAGC 3 cut(s) 487, 509, 774
BsgI GTGCAG 1 cut(s) 774
Bsh1236I CGCG 2 cut(s) 332, 341
BshFI GGCC 4 cut(s) 168, 773, 870, 1037
BshNI GGYRCC 1 cut(s) 179
BsiHKAI GWGCWC 2 cut(s) 373, 879
BsiHKCI CYCGRG 1 cut(s) 959
BsiSI CCGG 3 cut(s) 165, 317, 410
BslFI GGGAC 2 cut(s) 690, 819
BsmAI GTCTC 4 cut(s) 31, 448, 541, 615
BsmBI CGTCTC 1 cut(s) 448
BsmFI GGGAC 2 cut(s) 690, 819
BsmI GAATGC 4 cut(s) 625, 657, 690, 1064
BsnI GGCC 4 cut(s) 168, 773, 870, 1037
BsoBI CYCGRG 1 cut(s) 959
Bsp120I GGGCCC 1 cut(s) 771
Bsp1286I GDGCHC 4 cut(s) 373, 714, 775, 879
Bsp143I GATC 1 cut(s) 83
BspANI GGCC 4 cut(s) 168, 773, 870, 1037
BspCNI CTCAG 4 cut(s) 307, 436, 790, 1171
BspFNI CGCG 2 cut(s) 332, 341
BspLI GGNNCC 5 cut(s) 181, 364, 414, 773, 807
BspT107I GGYRCC 1 cut(s) 179
BsrBI CCGCTC 2 cut(s) 12, 716
BsrI ACTGG 2 cut(s) 45, 366
BssECI CCNNGG 7 cut(s) 24, 66, 339, 434, 519, 767, 928
BssMI GATC 1 cut(s) 83
BssSI CACGAG 1 cut(s) 1053
BssT1I CCWWGG 2 cut(s) 24, 66
Bst2BI CACGAG 1 cut(s) 1053
Bst2UI CCWGG 5 cut(s) 520, 579, 810, 872, 930
Bst4CI ACNGT 1 cut(s) 1095
BstC8I GCNNGC 4 cut(s) 10, 516, 563, 714
BstDEI CTNAG 4 cut(s) 294, 423, 798, 1179
BstDSI CCRYGG 2 cut(s) 339, 767
BstF5I GGATG 4 cut(s) 799, 901, 910, 1153
BstFNI CGCG 2 cut(s) 332, 341
BstH2I RGCGCY 2 cut(s) 105, 488
BstHHI GCGC 4 cut(s) 46, 104, 487, 643
BstKTI GATC 1 cut(s) 86
BstMAI GTCTC 4 cut(s) 31, 448, 541, 615
BstMBI GATC 1 cut(s) 83
BstMWI GCNNNNNNNGC 5 cut(s) 236, 310, 338, 436, 515
BstNI CCWGG 5 cut(s) 520, 579, 810, 872, 930
BstSCI CCNGG 5 cut(s) 518, 577, 808, 870, 928
BstSLI GKGCMC 3 cut(s) 714, 775, 879
BstUI CGCG 2 cut(s) 332, 341
BstV1I GCAGC 5 cut(s) 226, 313, 649, 740, 895
BstXI CCANNNNNNTGG 1 cut(s) 487
BsuRI GGCC 4 cut(s) 168, 773, 870, 1037
BtgI CCRYGG 2 cut(s) 339, 767
BtsCI GGATG 4 cut(s) 799, 901, 910, 1153
BtsI GCAGTG 1 cut(s) 958
BtsIMutI CAGTG 2 cut(s) 373, 958
Cac8I GCNNGC 4 cut(s) 10, 516, 563, 714
CfoI GCGC 4 cut(s) 46, 104, 487, 643
Cfr13I GGNCC 3 cut(s) 771, 772, 806
Cfr42I CCGCGG 1 cut(s) 342
CsiI ACCWGGT 1 cut(s) 808
Csp6I GTAC 1 cut(s) 925
CviAII CATG 1 cut(s) 901
CviQI GTAC 1 cut(s) 925
DdeI CTNAG 4 cut(s) 294, 423, 798, 1179
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 1035
EciI GGCGGA 2 cut(s) 139, 454
Eco130I CCWWGG 2 cut(s) 24, 66
Eco24I GRGCYC 1 cut(s) 775
Eco47I GGWCC 1 cut(s) 806
Eco47III AGCGCT 1 cut(s) 486
Eco57I CTGAAG 1 cut(s) 515
Eco88I CYCGRG 1 cut(s) 959
EcoO109I RGGNCCY 1 cut(s) 806
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 5 cut(s) 518, 577, 808, 870, 928
EcoT14I CCWWGG 2 cut(s) 24, 66
EcoT38I GRGCYC 1 cut(s) 775
ErhI CCWWGG 2 cut(s) 24, 66
Esp3I CGTCTC 1 cut(s) 448
FaeI CATG 1 cut(s) 904
FaiI YATR 7 cut(s) 722, 843, 866, 902, 1028, 1131, 1154
FaqI GGGAC 2 cut(s) 690, 819
FatI CATG 1 cut(s) 900
FauI CCCGC 2 cut(s) 5, 721
FblI GTMKAC 2 cut(s) 264, 539
FokI GGATG 4 cut(s) 806, 908, 917, 1160
FriOI GRGCYC 1 cut(s) 775
FspBI CTAG 1 cut(s) 980
GlaI GCGC 4 cut(s) 45, 103, 486, 642
GsaI CCCAGC 3 cut(s) 491, 513, 778
GsuI CTGGAG 2 cut(s) 80, 463
HaeII RGCGCY 2 cut(s) 105, 488
HaeIII GGCC 4 cut(s) 168, 773, 870, 1037
HapII CCGG 3 cut(s) 165, 317, 410
HhaI GCGC 4 cut(s) 46, 104, 487, 643
Hin1II CATG 1 cut(s) 904
Hin6I GCGC 4 cut(s) 44, 102, 485, 641
HinP1I GCGC 4 cut(s) 44, 102, 485, 641
HindIII AAGCTT 1 cut(s) 971
HinfI GANTC 6 cut(s) 91, 233, 254, 536, 549, 701
HpaII CCGG 3 cut(s) 165, 317, 410
HphI GGTGA 5 cut(s) 163, 262, 367, 399, 567
Hpy166II GTNNAC 4 cut(s) 265, 468, 540, 877
Hpy188I TCNGA 2 cut(s) 90, 1114
Hpy188III TCNNGA 8 cut(s) 97, 480, 533, 695, 734, 961, 980, 1055
Hpy8I GTNNAC 4 cut(s) 265, 468, 540, 877
Hpy99I CGWCG 3 cut(s) 146, 263, 281
HpyAV CCTTC 2 cut(s) 222, 1024
HpyCH4III ACNGT 1 cut(s) 1095
HpyCH4V TGCA 6 cut(s) 623, 755, 860, 877, 1062, 1118
HpyF10VI GCNNNNNNNGC 5 cut(s) 236, 310, 338, 436, 515
HpyF3I CTNAG 4 cut(s) 294, 423, 798, 1179
Hsp92II CATG 1 cut(s) 904
HspAI GCGC 4 cut(s) 44, 102, 485, 641
KspI CCGCGG 1 cut(s) 342
Kzo9I GATC 1 cut(s) 83
LmnI GCTCC 3 cut(s) 506, 659, 721
Lsp1109I GCAGC 5 cut(s) 226, 313, 649, 740, 895
LweI GCATC 4 cut(s) 753, 784, 895, 1105
MabI ACCWGGT 1 cut(s) 808
MaeI CTAG 1 cut(s) 980
MaeIII GTNAC 2 cut(s) 886, 953
MalI GATC 1 cut(s) 85
MbiI CCGCTC 2 cut(s) 12, 716
MboI GATC 1 cut(s) 83
MboII GAAGA 2 cut(s) 968, 1055
MhlI GDGCHC 4 cut(s) 373, 714, 775, 879
MlsI TGGCCA 1 cut(s) 1037
MluCI AATT 9 cut(s) 71, 380, 671, 824, 918, 996, 1046, 1063, 1070
MluNI TGGCCA 1 cut(s) 1037
MlyI GAGTC 3 cut(s) 85, 543, 545
MmeI TCCRAC 1 cut(s) 113
Mox20I TGGCCA 1 cut(s) 1037
MscI TGGCCA 1 cut(s) 1037
MseI TTAA 3 cut(s) 827, 915, 969
Msp20I TGGCCA 1 cut(s) 1037
MspA1I CMGCKG 2 cut(s) 239, 341
MspI CCGG 3 cut(s) 165, 317, 410
MspR9I CCNGG 5 cut(s) 520, 579, 810, 872, 930
Mva1269I GAATGC 4 cut(s) 625, 657, 690, 1064
MvaI CCWGG 5 cut(s) 520, 579, 810, 872, 930
MvnI CGCG 2 cut(s) 332, 341
MwoI GCNNNNNNNGC 5 cut(s) 236, 310, 338, 436, 515
NdeII GATC 1 cut(s) 83
NlaIII CATG 1 cut(s) 904
NlaIV GGNNCC 5 cut(s) 181, 364, 414, 773, 807
NmeAIII GCCGAG 2 cut(s) 459, 471
NmuCI GTSAC 2 cut(s) 886, 953
PaeR7I CTCGAG 1 cut(s) 959
PctI GAATGC 4 cut(s) 625, 657, 690, 1064
PfeI GAWTC 3 cut(s) 233, 254, 701
PleI GAGTC 3 cut(s) 85, 543, 544
PpsI GAGTC 3 cut(s) 85, 543, 544
PpuMI RGGWCCY 1 cut(s) 806
Psp5II RGGWCCY 1 cut(s) 806
Psp6I CCWGG 5 cut(s) 518, 577, 808, 870, 928
PspFI CCCAGC 3 cut(s) 487, 509, 774
PspGI CCWGG 5 cut(s) 518, 577, 808, 870, 928
PspN4I GGNNCC 5 cut(s) 181, 364, 414, 773, 807
PspOMI GGGCCC 1 cut(s) 771
PspPI GGNCC 3 cut(s) 771, 772, 806
PspPPI RGGWCCY 1 cut(s) 806
RsaI GTAC 1 cut(s) 926
RsaNI GTAC 1 cut(s) 925
SacII CCGCGG 1 cut(s) 342
SaqAI TTAA 3 cut(s) 827, 915, 969
Sau3AI GATC 1 cut(s) 83
Sau96I GGNCC 3 cut(s) 771, 772, 806
SchI GAGTC 3 cut(s) 85, 543, 545
ScrFI CCNGG 5 cut(s) 520, 579, 810, 872, 930
SduI GDGCHC 4 cut(s) 373, 714, 775, 879
SexAI ACCWGGT 1 cut(s) 808
SfaNI GCATC 4 cut(s) 753, 784, 895, 1105
Sfr274I CTCGAG 1 cut(s) 959
Sfr303I CCGCGG 1 cut(s) 342
SgrBI CCGCGG 1 cut(s) 342
SinI GGWCC 1 cut(s) 806
SlaI CTCGAG 1 cut(s) 959
SmlI CTYRAG 1 cut(s) 959
SmoI CTYRAG 1 cut(s) 959
Sse9I AATT 9 cut(s) 71, 380, 671, 824, 918, 996, 1046, 1063, 1070
SspMI CTAG 1 cut(s) 980
StyD4I CCNGG 5 cut(s) 518, 577, 808, 870, 928
StyI CCWWGG 2 cut(s) 24, 66
TaaI ACNGT 1 cut(s) 1095
TaqI TCGA 5 cut(s) 351, 735, 821, 837, 960
TasI AATT 9 cut(s) 71, 380, 671, 824, 918, 996, 1046, 1063, 1070
TauI GCSGC 6 cut(s) 301, 316, 332, 430, 433, 568
TfiI GAWTC 3 cut(s) 233, 254, 701
Tru1I TTAA 3 cut(s) 827, 915, 969
Tru9I TTAA 3 cut(s) 827, 915, 969
TscAI CASTG 2 cut(s) 373, 958
TseFI GTSAC 2 cut(s) 886, 953
TseI GCWGC 5 cut(s) 239, 301, 662, 728, 908
Tsp45I GTSAC 2 cut(s) 886, 953
TspDTI ATGAA 1 cut(s) 1043
TspGWI ACGGA 3 cut(s) 247, 453, 734
TspRI CASTG 2 cut(s) 373, 958
VneI GTGCAC 1 cut(s) 875
VpaK11BI GGWCC 1 cut(s) 806
XapI RAATTY 2 cut(s) 71, 918
XbaI TCTAGA 1 cut(s) 979
XhoI CTCGAG 1 cut(s) 959
XmiI GTMKAC 2 cut(s) 264, 539
XspI CTAG 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.