Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011021

Physical Location & Seq

Genomic Coordinates Forward (+)

26219592 .. 26220609

Gene Structure 1018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g28190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGTGAAAGGGGTGTCTCTAGTCGCCAAGGAGTTGGCGAAGCGATCTCCCACTTTGCTGAGCGTCAAAAATGGCGATTTGGAAGCCCTGATCAAGAAAGCCGTGGTGTCCGCCACCGACCTCTCCGGCCTCACCAAAGGCACCCTCTCCCAATTCACCAACAACCCCGTTGGTACTAATGACTTCAATTCCAATACCAATACGAATACCACAGGCCAAAATTCCGTCGTACACTTCACACATAAACAAGTTGAAGTTGAAGCAGCACCACCTCCTCCTTCACCTTCGTCCGCTCCTGCGGCGGAGTATGAACAAGAAGAACACAATCAACAACAGTTGCAGCAACCAGTGCAACAACAAGAAGAACATCAATCCACCACAGTGGACGTCCTTGATTCCGCCAAGAAGGAGAATTTGGTGGAACAAGAGCCACAACCTCAGCCGTCGCCGCAGCCATTGCAGAGGCGGAAGCCCAGAGAGAGACGAGTTCCTTCCACCCCCTTCTCCAGAGCACTCGGGTTTGTGGTCTCGGAACTGGGCTCGCGTGGGGAACCATTCAGGAGTCTACCAAGAGGTTCGTTTATGGTACGCCAACCTCATCAGACAAGCAATCTCCACTTTCTCCATTTTTGTCCCTCCAAAATGCAGAACGTTTGGCTCTCGCACTCTGTAGAATGCGTGGAGCTGCCCTCAAATTGGGACAGATGCTCAGTATACAAGACGAGTCCCTCGTCCCTGCTCCTATCGTGGCAGCTCTTGATATTGTCCGTCAAGGTGCAGATGTCATGCCCAGGAAACAGCTTAATCAAGTTTTGGATGCTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006725 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0015994 GO:0015996 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042180 GO:0042181 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044249 GO:0044270 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0050896 GO:0051186 GO:0051187 GO:0051188 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC1

Protein Analysis

276

Amino Acids

30.6

Weight (kDa)

8.67

Isoelectric Point (pI)

62.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01660
fragaria_vesca	FvH4_1g26110 FvH4_1g26110 FvH4_1g26110
malus_domestica	MD09G1291600.v1.1
prunus_persica	Prupe.3G001200_v2.0.a1
pyrus_communis	pycom09g19950 pycom17g28190
rosa_chinensis	RchiOBHm_Chr3g0485611
rosa_laevigata	RLG00000023142
rosa_multiflora	Rmu_co7961244.1_g000001 Rmu_sc0001272.1_g000006
rosa_roxburghii	Rroxscaffold_6G00396590 Rroxscaffold_6G00396900
rosa_rugosa	Rorug03G0220200
rosa_samantha	Rh3AG268700 Rh3BG304400 Rh3CG302900 Rh3DG299300
rosa_wichuraiana	Rw3G023970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
AccB1I	GGYRCC	1 cut(s)	140
AccBSI	CCGCTC	1 cut(s)	293
AccI	GTMKAC	2 cut(s)	565, 714
AccII	CGCG	1 cut(s)	544
AciI	CCGC	7 cut(s)	111, 291, 299, 302, 399, 449, 466
AclI	AACGTT	1 cut(s)	651
AcsI	RAATTY	2 cut(s)	220, 412
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	3 cut(s)	175, 231, 588
AfiI	CCNNNNNNNGG	1 cut(s)	696
AgsI	TTSAA	3 cut(s)	187, 254, 260
AjnI	CCWGG	1 cut(s)	790
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AleI	CACNNNNGTG	1 cut(s)	380
AluBI	AGCT	3 cut(s)	685, 754, 801
AluI	AGCT	3 cut(s)	685, 754, 801
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	3 cut(s)	21, 475, 532
Ama87I	CYCGRG	1 cut(s)	515
AoxI	GGCC	2 cut(s)	127, 214
ApeKI	GCWGC	5 cut(s)	263, 340, 451, 685, 751
ApoI	RAATTY	2 cut(s)	220, 412
AsuHPI	GGTGA	4 cut(s)	16, 124, 148, 273
AvaI	CYCGRG	1 cut(s)	515
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	542
Bbv12I	GWGCWC	1 cut(s)	514
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	5 cut(s)	275, 352, 463, 672, 763
BceAI	ACGGC	2 cut(s)	86, 427
BciT130I	CCWGG	1 cut(s)	792
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	3 cut(s)	21, 475, 532
BfaI	CTAG	2 cut(s)	20, 826
BfmI	CTRYAG	1 cut(s)	669
BisI	GCNGC	7 cut(s)	264, 300, 341, 449, 452, 686, 752
BlpI	GCTNAGC	1 cut(s)	59
BlsI	GCNGC	7 cut(s)	265, 301, 342, 450, 453, 687, 753
Bme1390I	CCNGG	1 cut(s)	792
BmeT110I	CYCGRG	1 cut(s)	515
BmiI	GGNNCC	2 cut(s)	142, 552
BmrFI	CCNGG	1 cut(s)	792
BmrI	ACTGGG	1 cut(s)	545
BmsI	GCATC	2 cut(s)	695, 807
BmuI	ACTGGG	1 cut(s)	545
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
BpmI	CTGGAG	1 cut(s)	490
Bpu10I	CCTNAGC	1 cut(s)	438
Bpu1102I	GCTNAGC	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	532
BsaJI	CCNNGG	3 cut(s)	27, 102, 790
Bsc4I	CCNNNNNNNGG	1 cut(s)	696
Bse1I	ACTGG	2 cut(s)	347, 540
Bse3DI	GCAATG	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	792
BseDI	CCNNGG	3 cut(s)	27, 102, 790
BseGI	GGATG	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	696
BseMI	GCAATG	1 cut(s)	455
BseMII	CTCAG	3 cut(s)	50, 452, 723
BseNI	ACTGG	2 cut(s)	347, 540
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	5 cut(s)	275, 352, 463, 672, 763
BsgI	GTGCAG	1 cut(s)	797
Bsh1236I	CGCG	1 cut(s)	544
BshFI	GGCC	2 cut(s)	129, 216
BshNI	GGYRCC	1 cut(s)	140
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	4 cut(s)	618, 711, 713, 718
BslI	CCNNNNNNNGG	1 cut(s)	696
BsmAI	GTCTC	3 cut(s)	21, 475, 532
BsmBI	CGTCTC	1 cut(s)	475
BsmFI	GGGAC	4 cut(s)	618, 711, 713, 718
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	2 cut(s)	129, 216
Bso31I	GGTCTC	1 cut(s)	532
BsoBI	CYCGRG	1 cut(s)	515
Bsp1286I	GDGCHC	2 cut(s)	514, 542
Bsp143I	GATC	2 cut(s)	44, 90
Bsp1720I	GCTNAGC	1 cut(s)	59
BspACI	CCGC	7 cut(s)	111, 291, 299, 302, 399, 449, 466
BspANI	GGCC	2 cut(s)	129, 216
BspCNI	CTCAG	3 cut(s)	51, 451, 722
BspFNI	CGCG	1 cut(s)	544
BspLI	GGNNCC	2 cut(s)	142, 552
BspT107I	GGYRCC	1 cut(s)	140
BspTNI	GGTCTC	1 cut(s)	532
BsrBI	CCGCTC	1 cut(s)	293
BsrDI	GCAATG	1 cut(s)	455
BsrI	ACTGG	2 cut(s)	347, 540
BssECI	CCNNGG	3 cut(s)	27, 102, 790
BssMI	GATC	2 cut(s)	44, 90
BssNAI	GTATAC	1 cut(s)	715
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	27
Bst1107I	GTATAC	1 cut(s)	715
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	2 cut(s)	336, 382
BstACI	GRCGYC	1 cut(s)	387
BstAPI	GCANNNNNTGC	2 cut(s)	349, 457
BstC8I	GCNNGC	1 cut(s)	542
BstDEI	CTNAG	3 cut(s)	59, 438, 709
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	822
BstFNI	CGCG	1 cut(s)	544
BstKTI	GATC	2 cut(s)	47, 93
BstMAI	GTCTC	3 cut(s)	21, 475, 532
BstMBI	GATC	2 cut(s)	44, 90
BstMWI	GCNNNNNNNGC	4 cut(s)	299, 349, 448, 457
BstNI	CCWGG	1 cut(s)	792
BstSCI	CCNGG	1 cut(s)	790
BstSFI	CTRYAG	1 cut(s)	669
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	5 cut(s)	275, 352, 463, 672, 763
BstXI	CCANNNNNNTGG	2 cut(s)	34, 382
BstZ17I	GTATAC	1 cut(s)	715
BsuRI	GGCC	2 cut(s)	129, 216
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	822
BtsIMutI	CAGTG	2 cut(s)	354, 387
Cac8I	GCNNGC	1 cut(s)	542
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	3 cut(s)	174, 230, 587
CviAII	CATG	1 cut(s)	786
CviQI	GTAC	3 cut(s)	174, 230, 587
DdeI	CTNAG	3 cut(s)	59, 438, 709
DpnI	GATC	2 cut(s)	46, 92
DpnII	GATC	2 cut(s)	44, 90
EciI	GGCGGA	4 cut(s)	100, 317, 388, 481
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	532
Eco88I	CYCGRG	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	790
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	542
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	475
FaeI	CATG	1 cut(s)	789
FaiI	YATR	5 cut(s)	243, 309, 584, 715, 787
FaqI	GGGAC	4 cut(s)	618, 711, 713, 718
FatI	CATG	1 cut(s)	785
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	2 cut(s)	565, 714
Fnu4HI	GCNGC	7 cut(s)	264, 300, 341, 449, 452, 686, 752
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	7 cut(s)	264, 300, 341, 449, 452, 686, 752
FspBI	CTAG	2 cut(s)	20, 826
GluI	GCNGC	7 cut(s)	264, 300, 341, 449, 452, 686, 752
GsuI	CTGGAG	1 cut(s)	490
HaeIII	GGCC	2 cut(s)	129, 216
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	1 cut(s)	789
HinfI	GANTC	3 cut(s)	395, 562, 724
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	4 cut(s)	16, 124, 148, 273
Hpy166II	GTNNAC	4 cut(s)	232, 385, 566, 715
Hpy188I	TCNGA	2 cut(s)	532, 603
Hpy188III	TCNNGA	4 cut(s)	94, 507, 559, 757
Hpy8I	GTNNAC	4 cut(s)	232, 385, 566, 715
Hpy99I	CGWCG	2 cut(s)	230, 448
HpyAV	CCTTC	5 cut(s)	288, 294, 400, 501, 511
HpyCH4III	ACNGT	2 cut(s)	336, 382
HpyCH4IV	ACGT	2 cut(s)	387, 651
HpyCH4V	TGCA	5 cut(s)	340, 352, 460, 646, 778
HpyF10VI	GCNNNNNNNGC	4 cut(s)	299, 349, 448, 457
HpyF3I	CTNAG	3 cut(s)	59, 438, 709
HpySE526I	ACGT	2 cut(s)	387, 651
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	789
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	2 cut(s)	44, 90
LmnI	GCTCC	3 cut(s)	298, 682, 744
Lsp1109I	GCAGC	5 cut(s)	275, 352, 463, 672, 763
LweI	GCATC	2 cut(s)	695, 807
MaeI	CTAG	2 cut(s)	20, 826
MaeII	ACGT	2 cut(s)	387, 651
MalI	GATC	2 cut(s)	46, 92
MbiI	CCGCTC	1 cut(s)	293
MboI	GATC	2 cut(s)	44, 90
MboII	GAAGA	2 cut(s)	329, 374
MhlI	GDGCHC	2 cut(s)	514, 542
MluCI	AATT	5 cut(s)	152, 187, 220, 412, 694
MlyI	GAGTC	2 cut(s)	571, 733
MseI	TTAA	1 cut(s)	803
MslI	CAYNNNNRTG	1 cut(s)	380
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	792
Mva1269I	GAATGC	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	792
MvnI	CGCG	1 cut(s)	544
MwoI	GCNNNNNNNGC	4 cut(s)	299, 349, 448, 457
NdeII	GATC	2 cut(s)	44, 90
NlaIII	CATG	1 cut(s)	789
NlaIV	GGNNCC	2 cut(s)	142, 552
OliI	CACNNNNGTG	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	1 cut(s)	728
PctI	GAATGC	1 cut(s)	680
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	7 cut(s)	265, 301, 342, 450, 453, 687, 753
PleI	GAGTC	2 cut(s)	570, 732
PpsI	GAGTC	2 cut(s)	570, 732
Psp1406I	AACGTT	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	790
PspGI	CCWGG	1 cut(s)	790
PspN4I	GGNNCC	2 cut(s)	142, 552
RsaI	GTAC	3 cut(s)	175, 231, 588
RsaNI	GTAC	3 cut(s)	174, 230, 587
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	1 cut(s)	803
SatI	GCNGC	7 cut(s)	264, 300, 341, 449, 452, 686, 752
Sau3AI	GATC	2 cut(s)	44, 90
SchI	GAGTC	2 cut(s)	571, 733
ScrFI	CCNGG	1 cut(s)	792
SduI	GDGCHC	2 cut(s)	514, 542
SfaNI	GCATC	2 cut(s)	695, 807
SfcI	CTRYAG	1 cut(s)	669
SmiMI	CAYNNNNRTG	1 cut(s)	380
Sse9I	AATT	5 cut(s)	152, 187, 220, 412, 694
SsiI	CCGC	7 cut(s)	111, 291, 299, 302, 399, 449, 466
SspMI	CTAG	2 cut(s)	20, 826
StyD4I	CCNGG	1 cut(s)	790
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	336, 382
TaiI	ACGT	2 cut(s)	390, 654
TasI	AATT	5 cut(s)	152, 187, 220, 412, 694
TauI	GCSGC	2 cut(s)	302, 451
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	803
Tru9I	TTAA	1 cut(s)	803
TscAI	CASTG	2 cut(s)	354, 387
TseI	GCWGC	5 cut(s)	263, 340, 451, 685, 751
TspDTI	ATGAA	1 cut(s)	324
TspGWI	ACGGA	2 cut(s)	214, 757
TspRI	CASTG	2 cut(s)	354, 387
XapI	RAATTY	2 cut(s)	220, 412
XmiI	GTMKAC	2 cut(s)	565, 714
XspI	CTAG	2 cut(s)	20, 826
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.