Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002705

Physical Location & Seq

Genomic Coordinates Reverse (-)

20076408 .. 20079886

Gene Structure 3479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0220200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGCGGGTTGGCAGAGGCATCTCCACTCCTTAATCCGTCAAGTTGGGAAAACCCTCGAATCCAATTACGCCCAATCTGCCTCCTTTTCTTCTTCTTCTTCTTCTTCTCGCTTAGAGGCTGGTTTGCCTTATTTGCAGAGACTCTGTAGCAGACCGTCTTCTCCTACCATTCCAAGGCCTCTTCATCGCTACTTTCAACAATTGGGGATTTCGAGTTCGAGGAACTTACTTGCAGAAGAACCGGTTTCATCTCCGTTGACTCCTCTTTTGACATCAACTTCTGCAAAAGCTGAAGAGCACAACCAGAAATCGCTTACTAAGCCTTCTACAGTTCAAGCTATCCTAAAGGGCATCAAACAGAGTCCTAAGAAGGTCAATTTGGTTGCTGCACTGGTTCGTGGCATGCGTGTTGAAGATGCATTGTTGCAGTTGCAAGTGACGGTAAAGAGAGCCGCAAAAACTGTATATCAGGTTATTCACTCAGCCCGAGCAAATGCAACTCATAATCATGGGCTGGATCCAGACCGTCTCCTTGTTGCTGAGGCATTTGTTGGAAAGGGATACTACAAGAAAAGAATTTCCTACCATGCTAAAGGAAAATGTGGAGTTAAAATGAGACCAGAATGCCGACTGACTGTGGTAGTACGGGAGATTACCCCTGACGAGGAGGCAGAGATAGCCAAACTGAAAGTTAAGAATTTCGTTAAGCTCACCAAGCGGGAAAGAAGGCTTGTTCCTCATCAGCTGATTGAGACAACTTCAATTTGGGGCCGAAAAGGCAAGGGTCGCAATCATGAACCAAATGGTATTCCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

272

Amino Acids

30.26

Weight (kDa)

10.34

Isoelectric Point (pI)

51.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L22	PF00237	113 - 216	1.6e-30	Ribosomal protein L22p/L17e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46930 AT3G62060 AT3G62060
fragaria_vesca	FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120
malus_domestica	MD09G1291500.v1.1
prunus_persica	Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1
pyrus_communis	pycom09g19940
rosa_chinensis	RchiOBHm_Chr3g0485621 RchiOBHm_Chr6g0247841 RchiOBHm_Chr6g0247851
rosa_laevigata	RLG00000015174 RLG00000023141
rosa_multiflora	Rmu_co8199800.1_g000001 Rmu_sc0001272.1_g000005 Rmu_sc0004711.1_g000007
rosa_roxburghii	Rroxscaffold_6G00396580 Rroxscaffold_6G00396890 Rroxscaffold_7G00213600
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268800 Rh3BG304500 Rh3CG303000 Rh3DG299400 Rh6CG037700 Rh6DG034700
rosa_wichuraiana	Rw3G023980 Rw6G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 453, 718
AclWI	GGATC	2 cut(s)	512, 525
AcsI	RAATTY	2 cut(s)	576, 697
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	1 cut(s)	645
AfiI	CCNNNNNNNGG	2 cut(s)	174, 664
AgeI	ACCGGT	1 cut(s)	241
AgsI	TTSAA	4 cut(s)	197, 335, 413, 762
AjuI	GAANNNNNNNTTGG	2 cut(s)	362, 394
AloI	GAACNNNNNNTCC	2 cut(s)	199, 231
AluBI	AGCT	4 cut(s)	290, 338, 709, 745
AluI	AGCT	4 cut(s)	290, 338, 709, 745
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	4 cut(s)	133, 533, 610, 746
AlwI	GGATC	2 cut(s)	512, 525
Ama87I	CYCGRG	1 cut(s)	486
AoxI	GGCC	2 cut(s)	176, 769
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	2 cut(s)	576, 697
ArsI	GACNNNNNNTTYG	2 cut(s)	250, 282
AsiGI	ACCGGT	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	769
AsuHPI	GGTGA	1 cut(s)	703
AvaI	CYCGRG	1 cut(s)	486
BamHI	GGATCC	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	300
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	1 cut(s)	373
BciVI	GTATCC	1 cut(s)	554
BcoDI	GTCTC	4 cut(s)	133, 533, 610, 746
BfmI	CTRYAG	2 cut(s)	145, 327
BfuI	GTATCC	1 cut(s)	554
BglI	GCCNNNNNGGC	1 cut(s)	777
BisI	GCNGC	2 cut(s)	387, 453
BlsI	GCNGC	2 cut(s)	388, 454
BmeT110I	CYCGRG	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	769
BmiI	GGNNCC	2 cut(s)	519, 770
BmsI	GCATC	3 cut(s)	28, 360, 406
BpiI	GAAGAC	1 cut(s)	150
Bpu10I	CCTNAGC	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	610
BsaJI	CCNNGG	1 cut(s)	173
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 664
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	2 cut(s)	174, 664
BseMII	CTCAG	2 cut(s)	495, 531
BseNI	ACTGG	1 cut(s)	396
BseRI	GAGGAG	2 cut(s)	252, 680
BseXI	GCAGC	1 cut(s)	373
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	2 cut(s)	178, 771
BshTI	ACCGGT	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	174, 664
BsmAI	GTCTC	4 cut(s)	133, 533, 610, 746
BsmBI	CGTCTC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	629
BsnI	GGCC	2 cut(s)	178, 771
Bso31I	GGTCTC	1 cut(s)	610
BsoBI	CYCGRG	1 cut(s)	486
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	1 cut(s)	517
BspACI	CCGC	3 cut(s)	5, 453, 718
BspANI	GGCC	2 cut(s)	178, 771
BspCNI	CTCAG	2 cut(s)	494, 532
BspHI	TCATGA	1 cut(s)	793
BspLI	GGNNCC	2 cut(s)	519, 770
BspPI	GGATC	2 cut(s)	512, 525
BspQI	GCTCTTC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	610
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	396
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	1 cut(s)	517
BssT1I	CCWWGG	1 cut(s)	173
Bst4CI	ACNGT	6 cut(s)	156, 331, 442, 463, 527, 637
Bst6I	CTCTTC	2 cut(s)	186, 288
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	5 cut(s)	112, 318, 366, 481, 540
BstKTI	GATC	1 cut(s)	520
BstMAI	GTCTC	4 cut(s)	133, 533, 610, 746
BstMBI	GATC	1 cut(s)	517
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 133, 319, 677, 715, 777, 786
BstNSI	RCATGY	1 cut(s)	406
BstSFI	CTRYAG	2 cut(s)	145, 327
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuI	GTATCC	1 cut(s)	554
BsuRI	GGCC	2 cut(s)	178, 771
BtgZI	GCGATG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	404
CciI	TCATGA	1 cut(s)	793
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	769
Csp6I	GTAC	1 cut(s)	644
CspAI	ACCGGT	1 cut(s)	241
CviAII	CATG	5 cut(s)	403, 509, 587, 794, 816
CviQI	GTAC	1 cut(s)	644
DdeI	CTNAG	5 cut(s)	112, 318, 366, 481, 540
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
Eam1104I	CTCTTC	2 cut(s)	186, 288
EarI	CTCTTC	2 cut(s)	186, 288
Eco130I	CCWWGG	1 cut(s)	173
Eco147I	AGGCCT	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	173
EcoT22I	ATGCAT	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	533
FaeI	CATG	5 cut(s)	406, 512, 590, 797, 819
FaiI	YATR	7 cut(s)	404, 466, 504, 510, 588, 795, 817
FatI	CATG	5 cut(s)	402, 508, 586, 793, 815
FauI	CCCGC	1 cut(s)	711
Fnu4HI	GCNGC	2 cut(s)	387, 453
Fsp4HI	GCNGC	2 cut(s)	387, 453
GluI	GCNGC	2 cut(s)	387, 453
HaeIII	GGCC	2 cut(s)	178, 771
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	5 cut(s)	406, 512, 590, 797, 819
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	4 cut(s)	59, 141, 259, 361
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	1 cut(s)	703
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188III	TCNNGA	2 cut(s)	521, 794
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	3 cut(s)	333, 364, 720
HpyCH4III	ACNGT	6 cut(s)	156, 331, 442, 463, 527, 637
HpyCH4V	TGCA	9 cut(s)	136, 233, 284, 389, 419, 427, 433, 497, 815
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 133, 319, 677, 715, 777, 786
HpyF3I	CTNAG	5 cut(s)	112, 318, 366, 481, 540
Hsp92II	CATG	5 cut(s)	406, 512, 590, 797, 819
Kzo9I	GATC	1 cut(s)	517
LguI	GCTCTTC	1 cut(s)	288
LpnPI	CCDG	9 cut(s)	105, 255, 317, 377, 455, 500, 534, 633, 672
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	3 cut(s)	28, 360, 406
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	1 cut(s)	519
MboI	GATC	1 cut(s)	517
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	6 cut(s)	64, 200, 376, 576, 697, 762
MlyI	GAGTC	3 cut(s)	135, 253, 370
MmeI	TCCRAC	1 cut(s)	532
Mph1103I	ATGCAT	1 cut(s)	421
MseI	TTAA	4 cut(s)	32, 609, 693, 705
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	745
MspI	CCGG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	629
MwoI	GCNNNNNNNGC	7 cut(s)	77, 133, 319, 677, 715, 777, 786
NdeII	GATC	1 cut(s)	517
NlaIII	CATG	5 cut(s)	406, 512, 590, 797, 819
NlaIV	GGNNCC	2 cut(s)	519, 770
NmuCI	GTSAC	1 cut(s)	436
NsiI	ATGCAT	1 cut(s)	421
NspI	RCATGY	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	406
PagI	TCATGA	1 cut(s)	793
PceI	AGGCCT	1 cut(s)	178
PciSI	GCTCTTC	1 cut(s)	288
PcsI	WCGNNNNNNNCGW	1 cut(s)	403
PctI	GAATGC	1 cut(s)	629
PfeI	GAWTC	1 cut(s)	59
PinAI	ACCGGT	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	388, 454
PleI	GAGTC	3 cut(s)	135, 253, 369
PpsI	GAGTC	3 cut(s)	135, 253, 369
PspN4I	GGNNCC	2 cut(s)	519, 770
PspPI	GGNCC	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	1 cut(s)	745
RsaI	GTAC	1 cut(s)	645
RsaNI	GTAC	1 cut(s)	644
RseI	CAYNNNNRTG	1 cut(s)	507
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	32, 609, 693, 705
SatI	GCNGC	2 cut(s)	387, 453
Sau3AI	GATC	1 cut(s)	517
Sau96I	GGNCC	1 cut(s)	769
SchI	GAGTC	3 cut(s)	135, 253, 370
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	6 cut(s)	292, 340, 375, 474, 711, 747
SfaNI	GCATC	3 cut(s)	28, 360, 406
SfcI	CTRYAG	2 cut(s)	145, 327
SmiMI	CAYNNNNRTG	1 cut(s)	507
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	6 cut(s)	64, 200, 376, 576, 697, 762
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	3 cut(s)	5, 453, 718
StuI	AGGCCT	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	6 cut(s)	156, 331, 442, 463, 527, 637
TaqI	TCGA	3 cut(s)	57, 212, 218
TasI	AATT	6 cut(s)	64, 200, 376, 576, 697, 762
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	4 cut(s)	32, 609, 693, 705
Tru9I	TTAA	4 cut(s)	32, 609, 693, 705
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	3 cut(s)	173, 237, 810
TspGWI	ACGGA	2 cut(s)	26, 243
TspRI	CASTG	1 cut(s)	396
XapI	RAATTY	2 cut(s)	576, 697
XceI	RCATGY	1 cut(s)	406
Zsp2I	ATGCAT	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.