Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8199800.1

Orthogroup ID

OG0002705

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 654

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8199800.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgtcttgtatttgttttcttcagctccaagctagtttagcccctccatctgctgatcctaatggtttatggaatgaatgcaaatcaaaccatgcaaattgtaatttatcccagatccagtttctccaagatttcaggaatcaaatgctcagtgctgtgaaagatttctcaatgtcccgtgaaaatggtttattcataaactcttgctttgctcactgccagtctgagagacaagatacatggtttgctgatgattctcctgttcttgaaaaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

92

Amino Acids

10.43

Weight (kDa)

4.59

Isoelectric Point (pI)

64.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46930 AT3G62060 AT3G62060
fragaria_vesca	FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120
malus_domestica	MD09G1291500.v1.1
prunus_persica	Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1
pyrus_communis	pycom09g19940
rosa_chinensis	RchiOBHm_Chr3g0485621 RchiOBHm_Chr6g0247841 RchiOBHm_Chr6g0247851
rosa_laevigata	RLG00000015174 RLG00000023141
rosa_multiflora	Rmu_co8199800.1_g000001 Rmu_sc0001272.1_g000005 Rmu_sc0004711.1_g000007
rosa_roxburghii	Rroxscaffold_6G00396580 Rroxscaffold_6G00396890 Rroxscaffold_7G00213600
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268800 Rh3BG304500 Rh3CG303000 Rh3DG299400 Rh6CG037700 Rh6DG034700
rosa_wichuraiana	Rw3G023980 Rw6G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	50, 109
AcuI	CTGAAG	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	269
AluBI	AGCT	2 cut(s)	25, 32
AluI	AGCT	2 cut(s)	25, 32
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	2 cut(s)	50, 109
Asp700I	GAANNNNTTC	1 cut(s)	164
BccI	CCATC	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	33
Bse1I	ACTGG	2 cut(s)	118, 220
BseMII	CTCAG	2 cut(s)	163, 216
BseNI	ACTGG	2 cut(s)	118, 220
BslFI	GGGAC	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	55, 114
BspCNI	CTCAG	2 cut(s)	162, 217
BspPI	GGATC	2 cut(s)	50, 109
BsrI	ACTGG	2 cut(s)	118, 220
BssMI	GATC	2 cut(s)	55, 114
BstDEI	CTNAG	2 cut(s)	149, 225
BstKTI	GATC	2 cut(s)	58, 117
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	2 cut(s)	55, 114
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	157, 214
CviAII	CATG	2 cut(s)	92, 240
CviJI	RGCY	3 cut(s)	25, 32, 41
CviKI_1	RGCY	3 cut(s)	25, 32, 41
DdeI	CTNAG	2 cut(s)	149, 225
DpnI	GATC	2 cut(s)	57, 116
DpnII	GATC	2 cut(s)	55, 114
Eco57I	CTGAAG	1 cut(s)	5
FaeI	CATG	2 cut(s)	95, 243
FaiI	YATR	4 cut(s)	70, 93, 197, 241
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	91, 239
FspBI	CTAG	1 cut(s)	33
Hin1II	CATG	2 cut(s)	95, 243
HinfI	GANTC	2 cut(s)	139, 254
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	2 cut(s)	136, 266
HpyCH4V	TGCA	2 cut(s)	81, 95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	149, 225
Hsp92II	CATG	2 cut(s)	95, 243
Kzo9I	GATC	2 cut(s)	55, 114
LmnI	GCTCC	1 cut(s)	30
LpnPI	CCDG	4 cut(s)	121, 125, 131, 233
MaeI	CTAG	1 cut(s)	33
MalI	GATC	2 cut(s)	57, 116
MboI	GATC	2 cut(s)	55, 114
MboII	GAAGA	1 cut(s)	11
MflI	RGATCY	1 cut(s)	114
MluCI	AATT	2 cut(s)	97, 103
MnlI	CCTC	1 cut(s)	54
MroXI	GAANNNNTTC	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	2 cut(s)	55, 114
NlaIII	CATG	2 cut(s)	95, 243
PctI	GAATGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	139, 254
PsuI	RGATCY	1 cut(s)	114
Sau3AI	GATC	2 cut(s)	55, 114
SetI	ASST	2 cut(s)	27, 34
Sse9I	AATT	2 cut(s)	97, 103
SspMI	CTAG	1 cut(s)	33
TasI	AATT	2 cut(s)	97, 103
TfiI	GAWTC	2 cut(s)	139, 254
TscAI	CASTG	2 cut(s)	157, 221
TspDTI	ATGAA	2 cut(s)	90, 184
TspRI	CASTG	2 cut(s)	157, 221
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.