Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002705

Physical Location & Seq

Genomic Coordinates Forward (+)

30623207 .. 30628224

Gene Structure 5018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG268800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAAGAAGCAGCAGCAGCTGAATGTGGGTACAGTGTTGGTGGTGGCATTGGCAGCTGCCTTTGTCAATCTGAAACTCAATGTGGGTGCTTTAAGTTTGAACGAATCAGTGAACGTTGAGAGAAAAGATGCAGTCTTTTTCGACAACGATCATGTCTCAGCCTCACCGACACAGCCTCAGCCTCTCATGGTGGCCCTCACTCTTATCGACAGCGCTGCTTCTAAAGGAGCTGATTTCTTCAACTGGAACAGGGTCAAGCTACGATACTGTGATGGGGCATCTTTTGCCGGAGACAGCCAGAATGAGGCTGCACAACTTAATTTTCGAGGGCAAAAGATTTGGTTGGTTGCTATGGAAGAATTGATGTCTAAGGGAATGCAGAATGCTAACCAGGCTCTTCTTTCTGGATGTTCCGCTGGGGGTCTGGCATCCATACTACACTGTGATGAGTTCCGGGACTTGTTTCCAACCAGTACCACAGTGAAATGTCTGAGTGATGCTGGGATGTTCCTTGATGCAATTGATGTATCTGGTGGGCACACACTAAGGAATTTGTATGCAGGAGTAGTTAGCTTGCAGGAAGTGCAAAAGAATCTTCCAAAGACTTGTATCAACCACCTAGATCCAACTTCGTGCTTTTTTCCTCAGAATTTGGTCGCAAATGTTAAGACGCCAATGTTTCTTCTAAATGCAGCCTATGATGCTTGGCAGCTCCAAGCTAGTTTAGCCCCTCCATCTGCTGATCCTAATGGTTTATGGAATGAATGCAAATCAAACCATGCAAATTGTAATTTATCCCAGATCCAGTTTCTCCAAGATTTCAGGAATCAAATGCTCAGTGCTGTGAAAGATTTCTCAATGTCCCGTGAAAATGGTTTATTCATAAACTCTTGCTTTGCTCACTGCCAGTCTGAGAGACAAGATACATGGTTTGCTGATGATTCTCCTGTTCTTGAAAGCCAGGCAATTGCACTGTCTGTGGGAGACTGGTACTTTGATCGAAGGACAGTTAAAGCTATTGACTGTGAATACCCCTGTGATAGCACCTGTCACAATCTTAACTTCAAAGAGGATGTAACTTCTACGACATTGACATATTCTCAGTCTGCAAAGTCGTCTATTACCGTGCTAAATCTGCTAGGTGCCTTGTTGATGCCTATAATGTGTTCGAGATGCATAACGTGGTTTTCATTTGTCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

400

Amino Acids

44.07

Weight (kDa)

5.36

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	67 - 351	1.3e-125	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46930 AT3G62060 AT3G62060
fragaria_vesca	FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120
malus_domestica	MD09G1291500.v1.1
prunus_persica	Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1
pyrus_communis	pycom09g19940
rosa_chinensis	RchiOBHm_Chr3g0485621 RchiOBHm_Chr6g0247841 RchiOBHm_Chr6g0247851
rosa_laevigata	RLG00000015174 RLG00000023141
rosa_multiflora	Rmu_co8199800.1_g000001 Rmu_sc0001272.1_g000005 Rmu_sc0004711.1_g000007
rosa_roxburghii	Rroxscaffold_6G00396580 Rroxscaffold_6G00396890 Rroxscaffold_7G00213600
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268800 Rh3BG304500 Rh3CG303000 Rh3DG299400 Rh6CG037700 Rh6DG034700
rosa_wichuraiana	Rw3G023980 Rw6G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1142
AciI	CCGC	1 cut(s)	414
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	3 cut(s)	617, 737, 796
AcsI	RAATTY	2 cut(s)	550, 649
AcyI	GRCGYC	1 cut(s)	671
AfaI	GTAC	3 cut(s)	31, 475, 992
AfeI	AGCGCT	1 cut(s)	214
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	4 cut(s)	100, 241, 956, 1066
AjnI	CCWGG	2 cut(s)	390, 960
AluBI	AGCT	8 cut(s)	19, 56, 230, 259, 573, 712, 719, 1016
AluI	AGCT	8 cut(s)	19, 56, 230, 259, 573, 712, 719, 1016
Alw26I	GTCTC	4 cut(s)	160, 285, 910, 978
AlwI	GGATC	3 cut(s)	617, 737, 796
AlwNI	CAGNNNCTG	1 cut(s)	19
Aor51HI	AGCGCT	1 cut(s)	214
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	9 cut(s)	10, 13, 16, 53, 56, 215, 308, 692, 709
ApoI	RAATTY	2 cut(s)	550, 649
ArsI	GACNNNNNNTTYG	2 cut(s)	977, 1009
Asp700I	GAANNNNTTC	1 cut(s)	851
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	193
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	1 cut(s)	156
BaeGI	GKGCMC	1 cut(s)	540
BanI	GGYRCC	1 cut(s)	1142
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	9 cut(s)	22, 25, 28, 43, 65, 202, 295, 704, 721
BccI	CCATC	2 cut(s)	266, 742
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	2 cut(s)	392, 962
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	4 cut(s)	160, 285, 910, 978
BfaI	CTAG	3 cut(s)	620, 720, 1139
BfoI	RGCGCY	1 cut(s)	216
BisI	GCNGC	9 cut(s)	11, 14, 17, 54, 57, 216, 309, 693, 710
BlsI	GCNGC	9 cut(s)	12, 15, 18, 55, 58, 217, 310, 694, 711
Bme1390I	CCNGG	3 cut(s)	392, 455, 962
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	1144
BmrFI	CCNGG	3 cut(s)	392, 455, 962
BmsI	GCATC	8 cut(s)	118, 287, 437, 487, 505, 691, 1143, 1163
Bpu10I	CCTNAGC	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	455
BsaHI	GRCGYC	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	5 cut(s)	248, 471, 805, 907, 992
BseBI	CCWGG	2 cut(s)	392, 962
BseGI	GGATG	4 cut(s)	413, 428, 510, 1078
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	7 cut(s)	171, 191, 482, 659, 850, 903, 1115
BseNI	ACTGG	5 cut(s)	248, 471, 805, 907, 992
BseSI	GKGCMC	1 cut(s)	540
BseXI	GCAGC	9 cut(s)	22, 25, 28, 43, 65, 202, 295, 704, 721
BseYI	CCCAGC	2 cut(s)	416, 500
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	1142
BsiSI	CCGG	2 cut(s)	288, 454
BslFI	GGGAC	2 cut(s)	470, 847
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	4 cut(s)	160, 285, 910, 978
BsmFI	GGGAC	2 cut(s)	470, 847
BsmI	GAATGC	3 cut(s)	381, 388, 770
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp143I	GATC	5 cut(s)	148, 622, 742, 801, 997
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	7 cut(s)	170, 190, 483, 658, 849, 904, 1114
BspLI	GGNNCC	1 cut(s)	1144
BspPI	GGATC	3 cut(s)	617, 737, 796
BspQI	GCTCTTC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	1142
BsrI	ACTGG	5 cut(s)	248, 471, 805, 907, 992
BssMI	GATC	5 cut(s)	148, 622, 742, 801, 997
BssNI	GRCGYC	1 cut(s)	671
Bst2UI	CCWGG	2 cut(s)	392, 962
Bst4CI	ACNGT	8 cut(s)	34, 269, 443, 481, 975, 1009, 1025, 1126
Bst6I	CTCTTC	1 cut(s)	402
BstACI	GRCGYC	1 cut(s)	671
BstAPI	GCANNNNNTGC	2 cut(s)	284, 583
BstC8I	GCNNGC	1 cut(s)	575
BstDEI	CTNAG	9 cut(s)	157, 177, 369, 491, 545, 645, 836, 912, 1101
BstF5I	GGATG	4 cut(s)	413, 428, 510, 1078
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	5 cut(s)	151, 625, 745, 804, 1000
BstMAI	GTCTC	4 cut(s)	160, 285, 910, 978
BstMBI	GATC	5 cut(s)	148, 622, 742, 801, 997
BstMWI	GCNNNNNNNGC	8 cut(s)	16, 53, 284, 392, 583, 701, 725, 1135
BstNI	CCWGG	2 cut(s)	392, 962
BstSCI	CCNGG	3 cut(s)	390, 453, 960
BstSLI	GKGCMC	1 cut(s)	540
BstV1I	GCAGC	9 cut(s)	22, 25, 28, 43, 65, 202, 295, 704, 721
BstX2I	RGATCY	2 cut(s)	622, 801
BstYI	RGATCY	2 cut(s)	622, 801
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	4 cut(s)	413, 428, 510, 1078
BtsI	GCAGTG	1 cut(s)	901
BtsIMutI	CAGTG	8 cut(s)	39, 114, 439, 486, 844, 901, 971, 1198
Cac8I	GCNNGC	1 cut(s)	575
CaiI	CAGNNNCTG	1 cut(s)	19
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	193
CseI	GACGC	1 cut(s)	679
Csp6I	GTAC	3 cut(s)	30, 474, 991
CviAII	CATG	4 cut(s)	152, 187, 779, 927
CviQI	GTAC	3 cut(s)	30, 474, 991
DdeI	CTNAG	9 cut(s)	157, 177, 369, 491, 545, 645, 836, 912, 1101
DpnI	GATC	5 cut(s)	150, 624, 744, 803, 999
DpnII	GATC	5 cut(s)	148, 622, 742, 801, 997
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco47III	AGCGCT	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	390, 960
EcoT22I	ATGCAT	1 cut(s)	1178
FaeI	CATG	4 cut(s)	155, 190, 782, 930
FaqI	GGGAC	2 cut(s)	470, 847
FatI	CATG	4 cut(s)	151, 186, 778, 926
Fnu4HI	GCNGC	9 cut(s)	11, 14, 17, 54, 57, 216, 309, 693, 710
FokI	GGATG	4 cut(s)	415, 420, 517, 1085
Fsp4HI	GCNGC	9 cut(s)	11, 14, 17, 54, 57, 216, 309, 693, 710
FspBI	CTAG	3 cut(s)	620, 720, 1139
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	9 cut(s)	11, 14, 17, 54, 57, 216, 309, 693, 710
GsaI	CCCAGC	2 cut(s)	420, 504
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	288, 454
HgaI	GACGC	1 cut(s)	679
HhaI	GCGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	671
Hin1II	CATG	4 cut(s)	155, 190, 782, 930
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	4 cut(s)	104, 592, 826, 941
HpaII	CCGG	2 cut(s)	288, 454
HphI	GGTGA	1 cut(s)	156
Hpy166II	GTNNAC	2 cut(s)	112, 1198
Hpy188I	TCNGA	4 cut(s)	72, 492, 648, 913
Hpy188III	TCNNGA	4 cut(s)	405, 823, 953, 1170
Hpy8I	GTNNAC	2 cut(s)	112, 1198
HpyAV	CCTTC	1 cut(s)	996
HpyCH4III	ACNGT	8 cut(s)	34, 269, 443, 481, 975, 1009, 1025, 1126
HpyCH4IV	ACGT	2 cut(s)	114, 1181
HpyF10VI	GCNNNNNNNGC	8 cut(s)	16, 53, 284, 392, 583, 701, 725, 1135
HpyF3I	CTNAG	9 cut(s)	157, 177, 369, 491, 545, 645, 836, 912, 1101
HpySE526I	ACGT	2 cut(s)	114, 1181
Hsp92I	GRCGYC	1 cut(s)	671
Hsp92II	CATG	4 cut(s)	155, 190, 782, 930
HspAI	GCGC	1 cut(s)	213
Kzo9I	GATC	5 cut(s)	148, 622, 742, 801, 997
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	2 cut(s)	227, 717
Lsp1109I	GCAGC	9 cut(s)	22, 25, 28, 43, 65, 202, 295, 704, 721
LweI	GCATC	8 cut(s)	118, 287, 437, 487, 505, 691, 1143, 1163
MaeI	CTAG	3 cut(s)	620, 720, 1139
MaeII	ACGT	2 cut(s)	114, 1181
MaeIII	GTNAC	2 cut(s)	1049, 1075
MalI	GATC	5 cut(s)	150, 624, 744, 803, 999
MboI	GATC	5 cut(s)	148, 622, 742, 801, 997
MboII	GAAGA	6 cut(s)	16, 229, 368, 389, 587, 674
MfeI	CAATTG	2 cut(s)	519, 966
MflI	RGATCY	2 cut(s)	622, 801
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	8 cut(s)	319, 359, 519, 550, 649, 784, 790, 966
MmeI	TCCRAC	2 cut(s)	491, 650
MnlI	CCTC	9 cut(s)	172, 186, 192, 206, 298, 320, 654, 741, 1063
Mph1103I	ATGCAT	1 cut(s)	1178
MroXI	GAANNNNTTC	1 cut(s)	851
MseI	TTAA	5 cut(s)	92, 318, 666, 1011, 1059
MslI	CAYNNNNRTG	1 cut(s)	444
MspA1I	CMGCKG	3 cut(s)	19, 56, 416
MspI	CCGG	2 cut(s)	288, 454
MspR9I	CCNGG	3 cut(s)	392, 455, 962
MunI	CAATTG	2 cut(s)	519, 966
Mva1269I	GAATGC	3 cut(s)	381, 388, 770
MvaI	CCWGG	2 cut(s)	392, 962
MwoI	GCNNNNNNNGC	8 cut(s)	16, 53, 284, 392, 583, 701, 725, 1135
NciI	CCSGG	1 cut(s)	455
NdeII	GATC	5 cut(s)	148, 622, 742, 801, 997
NlaIII	CATG	4 cut(s)	155, 190, 782, 930
NlaIV	GGNNCC	1 cut(s)	1144
NmuCI	GTSAC	1 cut(s)	1049
NsiI	ATGCAT	1 cut(s)	1178
PciSI	GCTCTTC	1 cut(s)	402
PctI	GAATGC	3 cut(s)	381, 388, 770
PdmI	GAANNNNTTC	1 cut(s)	851
PfeI	GAWTC	4 cut(s)	104, 592, 826, 941
PfoI	TCCNGGA	1 cut(s)	453
PkrI	GCNGC	9 cut(s)	12, 15, 18, 55, 58, 217, 310, 694, 711
Psp1406I	AACGTT	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	390, 960
PspFI	CCCAGC	2 cut(s)	416, 500
PspGI	CCWGG	2 cut(s)	390, 960
PspN4I	GGNNCC	1 cut(s)	1144
PspPI	GGNCC	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	19
PsuI	RGATCY	2 cut(s)	622, 801
PvuII	CAGCTG	2 cut(s)	19, 56
RsaI	GTAC	3 cut(s)	31, 475, 992
RsaNI	GTAC	3 cut(s)	30, 474, 991
RseI	CAYNNNNRTG	1 cut(s)	444
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	5 cut(s)	92, 318, 666, 1011, 1059
SatI	GCNGC	9 cut(s)	11, 14, 17, 54, 57, 216, 309, 693, 710
Sau3AI	GATC	5 cut(s)	148, 622, 742, 801, 997
Sau96I	GGNCC	1 cut(s)	193
ScrFI	CCNGG	3 cut(s)	392, 455, 962
SduI	GDGCHC	1 cut(s)	540
SfaNI	GCATC	8 cut(s)	118, 287, 437, 487, 505, 691, 1143, 1163
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	8 cut(s)	319, 359, 519, 550, 649, 784, 790, 966
SsiI	CCGC	1 cut(s)	414
SspMI	CTAG	3 cut(s)	620, 720, 1139
StyD4I	CCNGG	3 cut(s)	390, 453, 960
TaaI	ACNGT	8 cut(s)	34, 269, 443, 481, 975, 1009, 1025, 1126
TaiI	ACGT	2 cut(s)	117, 1184
TaqI	TCGA	5 cut(s)	141, 207, 325, 1000, 1169
TasI	AATT	8 cut(s)	319, 359, 519, 550, 649, 784, 790, 966
TfiI	GAWTC	4 cut(s)	104, 592, 826, 941
Tru1I	TTAA	5 cut(s)	92, 318, 666, 1011, 1059
Tru9I	TTAA	5 cut(s)	92, 318, 666, 1011, 1059
TscAI	CASTG	7 cut(s)	39, 114, 446, 486, 844, 908, 978
TseFI	GTSAC	1 cut(s)	1049
TseI	GCWGC	9 cut(s)	10, 13, 16, 53, 56, 215, 308, 692, 709
Tsp45I	GTSAC	1 cut(s)	1049
TspDTI	ATGAA	4 cut(s)	17, 777, 871, 1179
TspRI	CASTG	7 cut(s)	39, 114, 446, 486, 844, 908, 978
XapI	RAATTY	2 cut(s)	550, 649
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	3 cut(s)	620, 720, 1139
Zsp2I	ATGCAT	1 cut(s)	1178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.