Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002705

Physical Location & Seq

Genomic Coordinates Reverse (-)

37345350 .. 37351893

Gene Structure 6544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1291500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGAAGCATGTTGTGTGGTGGTGGCTGTGGTTGGTGGTGGTGACGGTGGCATTGGCGGCAGCGGATGCAAACGGATCCCAGAAATATGAGAAACAGCCATCTTCGTTAGAGTTTCAGTTTGCCGACAAGGAGGATGCGGCGGCAGCAGCGGCGGCGCCTGAGCTCATGGTTGGCCTCACTCTTATCGACTCTGCGGCTTCCAAAGGAGCTGTCTGTTTGGATGGCACATTGCCTGGTTACCATCTTCATGGTGGGTATGGATCGGGTGCAAATAGCTGGCTGATTCAGTTGGAGGGAGGTGGGTGGTGTAATACAATCAAAAATTGTGTTTTCCGTAAAACCACTCGCCGCGGTTCTTCCAAGTATATGGAAAAGCAGTTACCGTTCACTGGATTATTGAGCAATAAACCTCAACAAAACCCTGATTTCTTCAACTGGAACAGAGTCAAGCTCCGTTATTGCGACGGGGCATCTTTCAGTGGAGACAGTCAGAATGAGGCTGCACAACTTCAATTTCGAGGGCAAAGGATATGGTTGGCTGCCATGGACGAGTTAATGTCAAAAGGAATGCAGAAAGCTGACAAGGCTTTTCTTTCTGGATGCTCTGCTGGGGGTCTGGCATCCATACTACACTGTGATGAGTTCCGGGACATGTTTCCAGAAACTACCACGGTGAAATGTCTAAGTGATGCTGGAATGTTCCTTGATGCAACTGATGTATCTGGTGGGCACACATTAAGGAATTTTTATGCAGGTGTAGTTAGCTTGCAGGAAGTGCAAAAAAATCTGCCAAAGACTTGTCTCGATCATCTAGACCCAACTTCGTGCTTTTTTCCTCAGAATTTGGTTGCAAATGTTAAGACCCCCATGTTTCTTCTCAATGCAGCCTATGATGCATGGCAGGTGCAAGCTAGTTTAGCCCCTCGATCTGCTGATCCTCATGGAGTATGGAACGAATGCAAAGGAAATTATGCACTTTGTAACTCATCCCAGATCCAGTTTCTCCAAGACTTCAGAAATCAAATGCTCAATGCTGTTAGTGATTTCTCAAAGTCTAATAAAAACGGATTATTCATAAATTCCTGCTTCGCTCACTGCCAGTCTGAGAGACAAGATACATGGTTTGCTGATGATTCTCCTCTTCTTGGAAACAGGGCAATTGCTGTGTCTGTTGGAGACTGGTATTATGATAGAGTGCCGGTTAAAGCTATTGACTGCGCATACCCCTGCGATAACACCTGCCACAATCTTATGTCCAACGAGGATTTATCTTCGTCCGTGACATATTCTCAGTCCACAAGGTTGTCTTTTACCGTGCTAAATCTGCTAAGTGTCTTGACGGTGCCCATAATTTGCTCCAGATGCTTCATGTGGTTACAGTATGCCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

464

Amino Acids

51.23

Weight (kDa)

6.0

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	52 - 415	1.8e-171	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46930 AT3G62060 AT3G62060
fragaria_vesca	FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120
malus_domestica	MD09G1291500.v1.1
prunus_persica	Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1
pyrus_communis	pycom09g19940
rosa_chinensis	RchiOBHm_Chr3g0485621 RchiOBHm_Chr6g0247841 RchiOBHm_Chr6g0247851
rosa_laevigata	RLG00000015174 RLG00000023141
rosa_multiflora	Rmu_co8199800.1_g000001 Rmu_sc0001272.1_g000005 Rmu_sc0004711.1_g000007
rosa_roxburghii	Rroxscaffold_6G00396580 Rroxscaffold_6G00396890 Rroxscaffold_7G00213600
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268800 Rh3BG304500 Rh3CG303000 Rh3DG299400 Rh6CG037700 Rh6DG034700
rosa_wichuraiana	Rw3G023980 Rw6G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	743, 892, 1247
Acc16I	TGCGCA	1 cut(s)	1219
Acc36I	ACCTGC	3 cut(s)	743, 892, 1247
AccB1I	GGYRCC	2 cut(s)	154, 1342
AccII	CGCG	1 cut(s)	351
AciI	CCGC	9 cut(s)	56, 62, 137, 140, 149, 152, 194, 349, 351
AclWI	GGATC	5 cut(s)	69, 82, 268, 929, 988
AcsI	RAATTY	3 cut(s)	742, 841, 1078
AcuI	CTGAAG	1 cut(s)	997
AcyI	GRCGYC	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	389, 1145
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	2 cut(s)	433, 512
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	8 cut(s)	163, 209, 276, 451, 578, 765, 911, 1208
AluI	AGCT	8 cut(s)	163, 209, 276, 451, 578, 765, 911, 1208
Alw21I	GWGCWC	1 cut(s)	165
Alw26I	GTCTC	4 cut(s)	477, 806, 1102, 1170
AlwI	GGATC	5 cut(s)	69, 82, 268, 929, 988
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	6 cut(s)	59, 143, 146, 500, 539, 884
ApoI	RAATTY	3 cut(s)	742, 841, 1078
ArsI	GACNNNNNNTTYG	2 cut(s)	195, 227
AspLEI	GCGC	2 cut(s)	157, 1220
AsuC2I	CCSGG	1 cut(s)	647
AsuHPI	GGTGA	2 cut(s)	52, 685
BaeGI	GKGCMC	2 cut(s)	732, 1347
BaeI	ACNNNNGTAYC	2 cut(s)	702, 735
BamHI	GGATCC	1 cut(s)	74
BanI	GGYRCC	2 cut(s)	154, 1342
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	165
BbvI	GCAGC	6 cut(s)	71, 155, 158, 487, 526, 896
BccI	CCATC	3 cut(s)	106, 215, 249
BciT130I	CCWGG	1 cut(s)	234
BcnI	CCSGG	1 cut(s)	647
BcoDI	GTCTC	4 cut(s)	477, 806, 1102, 1170
BfaI	CTAG	2 cut(s)	812, 912
BfoI	RGCGCY	1 cut(s)	158
BfuAI	ACCTGC	3 cut(s)	743, 892, 1247
Bme1390I	CCNGG	2 cut(s)	234, 647
BmiI	GGNNCC	3 cut(s)	76, 156, 1344
BmrFI	CCNGG	2 cut(s)	234, 647
BmrI	ACTGGG	1 cut(s)	1381
BmsI	GCATC	9 cut(s)	55, 124, 479, 590, 629, 679, 697, 883, 1352
BmuI	ACTGGG	1 cut(s)	1381
BplI	GAGNNNNNCTC	2 cut(s)	435, 467
BpmI	CTGGAG	1 cut(s)	1342
Bpu10I	CCTNAGC	1 cut(s)	159
BpuMI	CCSGG	1 cut(s)	647
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	349, 543, 669
Bsc4I	CCNNNNNNNGG	2 cut(s)	389, 1145
Bse118I	RCCGGY	1 cut(s)	1198
Bse1I	ACTGG	6 cut(s)	394, 440, 997, 1099, 1184, 1387
Bse3DI	GCAATG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	349, 543, 669
BseGI	GGATG	6 cut(s)	70, 139, 226, 605, 620, 986
BseLI	CCNNNNNNNGG	2 cut(s)	389, 1145
BseMI	GCAATG	1 cut(s)	227
BseMII	CTCAG	4 cut(s)	150, 851, 1095, 1304
BseNI	ACTGG	6 cut(s)	394, 440, 997, 1099, 1184, 1387
BseRI	GAGGAG	1 cut(s)	1128
BseSI	GKGCMC	2 cut(s)	732, 1347
BseXI	GCAGC	6 cut(s)	71, 155, 158, 487, 526, 896
BseYI	CCCAGC	1 cut(s)	608
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	174
BshNI	GGYRCC	2 cut(s)	154, 1342
BsiHKAI	GWGCWC	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	646, 1199
BslFI	GGGAC	1 cut(s)	662
BslI	CCNNNNNNNGG	2 cut(s)	389, 1145
BsmAI	GTCTC	4 cut(s)	477, 806, 1102, 1170
BsmFI	GGGAC	1 cut(s)	662
BsmI	GAATGC	2 cut(s)	573, 962
BsnI	GGCC	1 cut(s)	174
Bsp1286I	GDGCHC	3 cut(s)	165, 732, 1347
Bsp143I	GATC	6 cut(s)	74, 260, 805, 926, 934, 993
Bsp19I	CCATGG	1 cut(s)	543
BspACI	CCGC	9 cut(s)	56, 62, 137, 140, 149, 152, 194, 349, 351
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	4 cut(s)	151, 850, 1096, 1303
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	3 cut(s)	76, 156, 1344
BspMI	ACCTGC	3 cut(s)	743, 892, 1247
BspPI	GGATC	5 cut(s)	69, 82, 268, 929, 988
BspT107I	GGYRCC	2 cut(s)	154, 1342
BsrDI	GCAATG	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	1198
BsrI	ACTGG	6 cut(s)	394, 440, 997, 1099, 1184, 1387
BssAI	RCCGGY	1 cut(s)	1198
BssECI	CCNNGG	3 cut(s)	349, 543, 669
BssMI	GATC	6 cut(s)	74, 260, 805, 926, 934, 993
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	8 cut(s)	46, 384, 488, 635, 673, 1315, 1342, 1380
Bst6I	CTCTTC	1 cut(s)	1146
BstACI	GRCGYC	1 cut(s)	155
BstAPI	GCANNNNNTGC	2 cut(s)	65, 775
BstC8I	GCNNGC	3 cut(s)	278, 767, 909
BstDEI	CTNAG	6 cut(s)	159, 683, 837, 1104, 1290, 1328
BstDSI	CCRYGG	3 cut(s)	349, 543, 669
BstEII	GGTNACC	1 cut(s)	236
BstF5I	GGATG	6 cut(s)	70, 139, 226, 605, 620, 986
BstFNI	CGCG	1 cut(s)	351
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	2 cut(s)	157, 1220
BstKTI	GATC	6 cut(s)	77, 263, 808, 929, 937, 996
BstMAI	GTCTC	4 cut(s)	477, 806, 1102, 1170
BstMBI	GATC	6 cut(s)	74, 260, 805, 926, 934, 993
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	2 cut(s)	11, 655
BstPI	GGTNACC	1 cut(s)	236
BstSCI	CCNGG	2 cut(s)	232, 645
BstSLI	GKGCMC	2 cut(s)	732, 1347
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	6 cut(s)	71, 155, 158, 487, 526, 896
BstX2I	RGATCY	2 cut(s)	74, 993
BstXI	CCANNNNNNTGG	2 cut(s)	248, 367
BstYI	RGATCY	2 cut(s)	74, 993
BsuRI	GGCC	1 cut(s)	174
BtgI	CCRYGG	3 cut(s)	349, 543, 669
BtsCI	GGATG	6 cut(s)	70, 139, 226, 605, 620, 986
BtsI	GCAGTG	1 cut(s)	1093
BtsIMutI	CAGTG	4 cut(s)	387, 484, 631, 1093
BveI	ACCTGC	3 cut(s)	743, 892, 1247
Cac8I	GCNNGC	3 cut(s)	278, 767, 909
CfoI	GCGC	2 cut(s)	157, 1220
Cfr10I	RCCGGY	1 cut(s)	1198
Cfr42I	CCGCGG	1 cut(s)	352
DdeI	CTNAG	6 cut(s)	159, 683, 837, 1104, 1290, 1328
DinI	GGCGCC	1 cut(s)	156
DpnI	GATC	6 cut(s)	76, 262, 807, 928, 936, 995
DpnII	GATC	6 cut(s)	74, 260, 805, 926, 934, 993
Eam1104I	CTCTTC	1 cut(s)	1146
EarI	CTCTTC	1 cut(s)	1146
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	543
Eco24I	GRGCYC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	997
Eco91I	GGTNACC	1 cut(s)	236
EcoICRI	GAGCTC	1 cut(s)	163
EcoO65I	GGTNACC	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	543
EcoT22I	ATGCAT	1 cut(s)	898
EcoT38I	GRGCYC	1 cut(s)	165
EgeI	GGCGCC	1 cut(s)	156
EheI	GGCGCC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	543
FalI	AAGNNNNNCTT	2 cut(s)	1291, 1323
FaqI	GGGAC	1 cut(s)	662
FokI	GGATG	6 cut(s)	77, 146, 233, 607, 612, 973
FriOI	GRGCYC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	812, 912
FspI	TGCGCA	1 cut(s)	1219
GlaI	GCGC	2 cut(s)	156, 1219
GsaI	CCCAGC	1 cut(s)	612
GsuI	CTGGAG	1 cut(s)	1342
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	2 cut(s)	646, 1199
HhaI	GCGC	2 cut(s)	157, 1220
Hin1I	GRCGYC	1 cut(s)	155
Hin6I	GCGC	2 cut(s)	155, 1218
HinP1I	GCGC	2 cut(s)	155, 1218
HinfI	GANTC	4 cut(s)	188, 283, 444, 1133
HpaII	CCGG	2 cut(s)	646, 1199
HphI	GGTGA	2 cut(s)	52, 685
Hpy166II	GTNNAC	2 cut(s)	387, 1296
Hpy188I	TCNGA	4 cut(s)	492, 840, 1016, 1105
Hpy188III	TCNNGA	6 cut(s)	597, 659, 803, 812, 1336, 1359
Hpy8I	GTNNAC	2 cut(s)	387, 1296
Hpy99I	CGWCG	1 cut(s)	467
HpyCH4III	ACNGT	8 cut(s)	46, 384, 488, 635, 673, 1315, 1342, 1380
HpyF3I	CTNAG	6 cut(s)	159, 683, 837, 1104, 1290, 1328
Hsp92I	GRCGYC	1 cut(s)	155
HspAI	GCGC	2 cut(s)	155, 1218
KasI	GGCGCC	1 cut(s)	154
KspI	CCGCGG	1 cut(s)	352
Kzo9I	GATC	6 cut(s)	74, 260, 805, 926, 934, 993
LmnI	GCTCC	3 cut(s)	206, 456, 1361
Lsp1109I	GCAGC	6 cut(s)	71, 155, 158, 487, 526, 896
LweI	GCATC	9 cut(s)	55, 124, 479, 590, 629, 679, 697, 883, 1352
MaeI	CTAG	2 cut(s)	812, 912
MaeIII	GTNAC	6 cut(s)	40, 236, 378, 980, 1279, 1374
MalI	GATC	6 cut(s)	76, 262, 807, 928, 936, 995
MboI	GATC	6 cut(s)	74, 260, 805, 926, 934, 993
MboII	GAAGA	7 cut(s)	93, 236, 348, 421, 866, 1133, 1263
MfeI	CAATTG	1 cut(s)	1158
MflI	RGATCY	2 cut(s)	74, 993
MhlI	GDGCHC	3 cut(s)	165, 732, 1347
MluCI	AATT	8 cut(s)	322, 512, 742, 841, 967, 1078, 1158, 1350
Mly113I	GGCGCC	1 cut(s)	155
MlyI	GAGTC	2 cut(s)	182, 453
MmeI	TCCRAC	3 cut(s)	270, 1153, 1281
Mph1103I	ATGCAT	1 cut(s)	898
MseI	TTAA	4 cut(s)	554, 737, 858, 1203
MslI	CAYNNNNRTG	2 cut(s)	246, 636
MspA1I	CMGCKG	3 cut(s)	62, 149, 351
MspI	CCGG	2 cut(s)	646, 1199
MspR9I	CCNGG	2 cut(s)	234, 647
MunI	CAATTG	1 cut(s)	1158
Mva1269I	GAATGC	2 cut(s)	573, 962
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	351
NarI	GGCGCC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	647
NcoI	CCATGG	1 cut(s)	543
NdeII	GATC	6 cut(s)	74, 260, 805, 926, 934, 993
NlaIV	GGNNCC	3 cut(s)	76, 156, 1344
NmuCI	GTSAC	2 cut(s)	40, 1279
NsbI	TGCGCA	1 cut(s)	1219
NsiI	ATGCAT	1 cut(s)	898
NspI	RCATGY	2 cut(s)	11, 655
PaqCI	CACCTGC	3 cut(s)	743, 892, 1247
PciI	ACATGT	1 cut(s)	651
PctI	GAATGC	2 cut(s)	573, 962
PfeI	GAWTC	2 cut(s)	283, 1133
PfoI	TCCNGGA	1 cut(s)	645
PleI	GAGTC	2 cut(s)	182, 452
PluTI	GGCGCC	1 cut(s)	158
PpsI	GAGTC	2 cut(s)	182, 452
PscI	ACATGT	1 cut(s)	651
Psp124BI	GAGCTC	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	232
PspEI	GGTNACC	1 cut(s)	236
PspFI	CCCAGC	1 cut(s)	608
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	3 cut(s)	76, 156, 1344
PsuI	RGATCY	2 cut(s)	74, 993
RseI	CAYNNNNRTG	2 cut(s)	246, 636
SacI	GAGCTC	1 cut(s)	165
SacII	CCGCGG	1 cut(s)	352
SaqAI	TTAA	4 cut(s)	554, 737, 858, 1203
Sau3AI	GATC	6 cut(s)	74, 260, 805, 926, 934, 993
SchI	GAGTC	2 cut(s)	182, 453
ScrFI	CCNGG	2 cut(s)	234, 647
SduI	GDGCHC	3 cut(s)	165, 732, 1347
SfaNI	GCATC	9 cut(s)	55, 124, 479, 590, 629, 679, 697, 883, 1352
SfoI	GGCGCC	1 cut(s)	156
Sfr303I	CCGCGG	1 cut(s)	352
SgrBI	CCGCGG	1 cut(s)	352
SmiMI	CAYNNNNRTG	2 cut(s)	246, 636
Sse9I	AATT	8 cut(s)	322, 512, 742, 841, 967, 1078, 1158, 1350
SsiI	CCGC	9 cut(s)	56, 62, 137, 140, 149, 152, 194, 349, 351
SspDI	GGCGCC	1 cut(s)	154
SspMI	CTAG	2 cut(s)	812, 912
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	232, 645
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	8 cut(s)	46, 384, 488, 635, 673, 1315, 1342, 1380
TaqI	TCGA	4 cut(s)	186, 517, 804, 925
TasI	AATT	8 cut(s)	322, 512, 742, 841, 967, 1078, 1158, 1350
TauI	GCSGC	7 cut(s)	59, 140, 143, 152, 155, 197, 351
TfiI	GAWTC	2 cut(s)	283, 1133
Tru1I	TTAA	4 cut(s)	554, 737, 858, 1203
Tru9I	TTAA	4 cut(s)	554, 737, 858, 1203
TscAI	CASTG	4 cut(s)	394, 484, 638, 1100
TseFI	GTSAC	2 cut(s)	40, 1279
TseI	GCWGC	6 cut(s)	59, 143, 146, 500, 539, 884
Tsp45I	GTSAC	2 cut(s)	40, 1279
TspDTI	ATGAA	4 cut(s)	17, 236, 1063, 1357
TspGWI	ACGGA	5 cut(s)	87, 323, 443, 1080, 1267
TspRI	CASTG	4 cut(s)	394, 484, 638, 1100
XapI	RAATTY	3 cut(s)	742, 841, 1078
XbaI	TCTAGA	1 cut(s)	811
XceI	RCATGY	2 cut(s)	11, 655
XcmI	CCANNNNNNNNNTGG	1 cut(s)	248
XspI	CTAG	2 cut(s)	812, 912
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.