Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002705

Physical Location & Seq

Genomic Coordinates Forward (+)

31444111 .. 31450063

Gene Structure 5953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG299400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGAAGAAGAAGCAGCAGCAGCTGAATGTGGGTACAGTGTTGGTGGTGGCATTGGCAGCTGCCTTTGTCAATCTGAAACTCAATGTGGGTGCTTTGAGTTTGAACGAATCAGTGAACGTTGGGAGAAAAGATGCAGTCTTGTTCGACAACGATCATGTCTCAGCCTCAGCCTCACCGACACAGCCTCAGCCTCTCATGGTGGCCCTCACTCTTATCGACAGCGCTGCTTCTAAAGGAGCTGTCTGTTTGGATGGAACACCGCCCGGTTACCATCTGGATCGTGGGTCTGGATCCGGTGCAAACAGCTGGCTCATTCAGTTGGAGGGAGGTGGGTGGTGTAATACTATCAGAAATTGTGTTTATCGCAAGACCACTCGCCGCGGTTCATCCAACCACATGGAAAAGCAATTACCATTCACAGGAATTTTGAGCAATAAACCTGAAGAAAACCCCGACTTCTTCAACTGGAACAGGGTCAAGCTACGATACTGTGATGGGGCATCTTTTGCCGGAGACAGCCAGAATGAGGCTGCACAACTTAATTTTCGAGGGCAAAAGATTTGGTTGGTTGCTATGGAAGAGTTCATGTCTAAGGGAATGCAGAATGCTAACCAGGCTCTTCTTTCTGGATGTTCCGCTGGGGGTCTGGCATCCATACTACACTGTGATGAGTTCCGGGACTTGTTTCCAACGAGTACCACAGTGAAATGTCTGAGTGATGCTGGGATGTTCCTTGATGCAATTGATGTATCTGGTGGGCACACACTAAGGAATTTGTATGCAGGAGTAGTTAGCTTGCAGGAAGTGCAAAAGAATCTTCCAAAGACCTGTATCAACCACCTAGATCCAACTTCGTGCTTTTTTCCTCAGAATTTGGTCGCAAATGTTAAGACGCCAATGTTTCTTCTAAATGCAGCCTATGATGCTTGGCAGGTAATTGCTTATTTGTCTTATCATTTTTTGACAATTTACTTTTTCTATGATCGCATATCAGAGGGACTGGAAGTATTAGTTGACTATATGTATATATGCCTCCTGAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

348

Amino Acids

38.25

Weight (kDa)

6.7

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	62 - 318	1e-124	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46930 AT3G62060 AT3G62060
fragaria_vesca	FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120
malus_domestica	MD09G1291500.v1.1
prunus_persica	Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1
pyrus_communis	pycom09g19940
rosa_chinensis	RchiOBHm_Chr3g0485621 RchiOBHm_Chr6g0247841 RchiOBHm_Chr6g0247851
rosa_laevigata	RLG00000015174 RLG00000023141
rosa_multiflora	Rmu_co8199800.1_g000001 Rmu_sc0001272.1_g000005 Rmu_sc0004711.1_g000007
rosa_roxburghii	Rroxscaffold_6G00396580 Rroxscaffold_6G00396890 Rroxscaffold_7G00213600
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268800 Rh3BG304500 Rh3CG303000 Rh3DG299400 Rh6CG037700 Rh6DG034700
rosa_wichuraiana	Rw3G023980 Rw6G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	922
AccII	CGCG	1 cut(s)	381
AciI	CCGC	4 cut(s)	260, 379, 381, 636
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	4 cut(s)	285, 285, 298, 839
AcsI	RAATTY	3 cut(s)	423, 772, 871
AcuI	CTGAAG	1 cut(s)	462
AcyI	GRCGYC	1 cut(s)	893
AfaI	GTAC	2 cut(s)	34, 697
AfeI	AGCGCT	1 cut(s)	223
AfiI	CCNNNNNNNGG	2 cut(s)	419, 526
AgsI	TTSAA	2 cut(s)	103, 463
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	6 cut(s)	22, 59, 239, 306, 481, 795
AluI	AGCT	6 cut(s)	22, 59, 239, 306, 481, 795
Alw26I	GTCTC	2 cut(s)	163, 507
AlwI	GGATC	4 cut(s)	285, 285, 298, 839
AlwNI	CAGNNNCTG	1 cut(s)	22
Aor51HI	AGCGCT	1 cut(s)	223
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	8 cut(s)	13, 16, 19, 56, 59, 224, 530, 914
ApoI	RAATTY	3 cut(s)	423, 772, 871
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	202
AsuC2I	CCSGG	2 cut(s)	264, 677
AsuHPI	GGTGA	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	762
BamHI	GGATCC	1 cut(s)	290
BbvCI	CCTCAGC	2 cut(s)	166, 186
BbvI	GCAGC	8 cut(s)	25, 28, 31, 46, 68, 211, 517, 926
BccI	CCATC	3 cut(s)	245, 279, 488
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	1 cut(s)	614
BcnI	CCSGG	2 cut(s)	264, 677
BcoDI	GTCTC	2 cut(s)	163, 507
BfaI	CTAG	1 cut(s)	842
BfoI	RGCGCY	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	922
BisI	GCNGC	9 cut(s)	14, 17, 20, 57, 60, 225, 379, 531, 915
BlsI	GCNGC	9 cut(s)	15, 18, 21, 58, 61, 226, 380, 532, 916
Bme1390I	CCNGG	3 cut(s)	264, 614, 677
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	3 cut(s)	264, 614, 677
BmsI	GCATC	6 cut(s)	121, 509, 659, 709, 727, 913
Bpu10I	CCTNAGC	2 cut(s)	166, 186
BpuMI	CCSGG	2 cut(s)	264, 677
BsaHI	GRCGYC	1 cut(s)	893
BsaJI	CCNNGG	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 526
Bse1I	ACTGG	2 cut(s)	470, 1005
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	5 cut(s)	256, 386, 635, 650, 732
BseLI	CCNNNNNNNGG	2 cut(s)	419, 526
BseMII	CTCAG	5 cut(s)	174, 180, 200, 704, 881
BseNI	ACTGG	2 cut(s)	470, 1005
BseSI	GKGCMC	1 cut(s)	762
BseXI	GCAGC	8 cut(s)	25, 28, 31, 46, 68, 211, 517, 926
BseYI	CCCAGC	2 cut(s)	638, 722
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	203
BsiSI	CCGG	4 cut(s)	264, 294, 510, 676
BslFI	GGGAC	2 cut(s)	692, 1011
BslI	CCNNNNNNNGG	2 cut(s)	419, 526
BsmAI	GTCTC	2 cut(s)	163, 507
BsmFI	GGGAC	2 cut(s)	692, 1011
BsmI	GAATGC	2 cut(s)	603, 610
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	762
Bsp143I	GATC	5 cut(s)	151, 277, 290, 844, 982
BspACI	CCGC	4 cut(s)	260, 379, 381, 636
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	5 cut(s)	173, 179, 199, 705, 880
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	292
BspMI	ACCTGC	1 cut(s)	922
BspPI	GGATC	4 cut(s)	285, 285, 298, 839
BspQI	GCTCTTC	1 cut(s)	624
BsrI	ACTGG	2 cut(s)	470, 1005
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	5 cut(s)	151, 277, 290, 844, 982
BssNI	GRCGYC	1 cut(s)	893
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	4 cut(s)	37, 491, 665, 703
Bst6I	CTCTTC	2 cut(s)	573, 624
BstACI	GRCGYC	1 cut(s)	893
BstAPI	GCANNNNNTGC	2 cut(s)	506, 805
BstC8I	GCNNGC	2 cut(s)	308, 797
BstDEI	CTNAG	7 cut(s)	160, 166, 186, 591, 713, 767, 867
BstDSI	CCRYGG	1 cut(s)	379
BstEII	GGTNACC	1 cut(s)	266
BstF5I	GGATG	5 cut(s)	256, 386, 635, 650, 732
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	5 cut(s)	154, 280, 293, 847, 985
BstMAI	GTCTC	2 cut(s)	163, 507
BstMBI	GATC	5 cut(s)	151, 277, 290, 844, 982
BstMWI	GCNNNNNNNGC	6 cut(s)	19, 56, 506, 614, 805, 923
BstNI	CCWGG	1 cut(s)	614
BstPI	GGTNACC	1 cut(s)	266
BstSCI	CCNGG	3 cut(s)	262, 612, 675
BstSLI	GKGCMC	1 cut(s)	762
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	8 cut(s)	25, 28, 31, 46, 68, 211, 517, 926
BstX2I	RGATCY	2 cut(s)	290, 844
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	2 cut(s)	290, 844
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	5 cut(s)	256, 386, 635, 650, 732
BtsIMutI	CAGTG	5 cut(s)	42, 117, 661, 708, 1042
BveI	ACCTGC	1 cut(s)	922
Cac8I	GCNNGC	2 cut(s)	308, 797
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	202
Cfr42I	CCGCGG	1 cut(s)	382
CseI	GACGC	1 cut(s)	901
Csp6I	GTAC	2 cut(s)	33, 696
CviAII	CATG	4 cut(s)	155, 196, 397, 586
CviQI	GTAC	2 cut(s)	33, 696
DdeI	CTNAG	7 cut(s)	160, 166, 186, 591, 713, 767, 867
DpnI	GATC	5 cut(s)	153, 279, 292, 846, 984
DpnII	GATC	5 cut(s)	151, 277, 290, 844, 982
Eam1104I	CTCTTC	2 cut(s)	573, 624
EarI	CTCTTC	2 cut(s)	573, 624
Eco47III	AGCGCT	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	462
Eco91I	GGTNACC	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	612
FaeI	CATG	4 cut(s)	158, 199, 400, 589
FaqI	GGGAC	2 cut(s)	692, 1011
FatI	CATG	4 cut(s)	154, 195, 396, 585
Fnu4HI	GCNGC	9 cut(s)	14, 17, 20, 57, 60, 225, 379, 531, 915
FokI	GGATG	5 cut(s)	263, 373, 637, 642, 739
Fsp4HI	GCNGC	9 cut(s)	14, 17, 20, 57, 60, 225, 379, 531, 915
FspBI	CTAG	1 cut(s)	842
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	9 cut(s)	14, 17, 20, 57, 60, 225, 379, 531, 915
GsaI	CCCAGC	2 cut(s)	642, 726
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	4 cut(s)	264, 294, 510, 676
HgaI	GACGC	1 cut(s)	901
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	893
Hin1II	CATG	4 cut(s)	158, 199, 400, 589
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	1015
HindII	GTYRAC	1 cut(s)	1015
HinfI	GANTC	2 cut(s)	107, 814
HpaII	CCGG	4 cut(s)	264, 294, 510, 676
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	115, 1015
Hpy188I	TCNGA	5 cut(s)	75, 350, 714, 870, 994
Hpy188III	TCNNGA	4 cut(s)	275, 288, 627, 1036
Hpy8I	GTNNAC	2 cut(s)	115, 1015
HpyCH4III	ACNGT	4 cut(s)	37, 491, 665, 703
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	9 cut(s)	134, 299, 533, 601, 740, 782, 799, 808, 914
HpyF10VI	GCNNNNNNNGC	6 cut(s)	19, 56, 506, 614, 805, 923
HpyF3I	CTNAG	7 cut(s)	160, 166, 186, 591, 713, 767, 867
HpySE526I	ACGT	1 cut(s)	117
Hsp92I	GRCGYC	1 cut(s)	893
Hsp92II	CATG	4 cut(s)	158, 199, 400, 589
HspAI	GCGC	1 cut(s)	222
KspI	CCGCGG	1 cut(s)	382
Kzo9I	GATC	5 cut(s)	151, 277, 290, 844, 982
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	8 cut(s)	25, 28, 31, 46, 68, 211, 517, 926
LweI	GCATC	6 cut(s)	121, 509, 659, 709, 727, 913
MaeI	CTAG	1 cut(s)	842
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	5 cut(s)	153, 279, 292, 846, 984
MboI	GATC	5 cut(s)	151, 277, 290, 844, 982
MboII	GAAGA	8 cut(s)	16, 19, 451, 455, 590, 611, 809, 896
MfeI	CAATTG	1 cut(s)	741
MflI	RGATCY	2 cut(s)	290, 844
MhlI	GDGCHC	1 cut(s)	762
MluCI	AATT	9 cut(s)	352, 407, 423, 541, 741, 772, 871, 936, 966
MmeI	TCCRAC	4 cut(s)	300, 414, 713, 872
MseI	TTAA	2 cut(s)	540, 888
MslI	CAYNNNNRTG	1 cut(s)	666
MspA1I	CMGCKG	5 cut(s)	22, 59, 306, 381, 638
MspI	CCGG	4 cut(s)	264, 294, 510, 676
MspR9I	CCNGG	3 cut(s)	264, 614, 677
MunI	CAATTG	1 cut(s)	741
Mva1269I	GAATGC	2 cut(s)	603, 610
MvaI	CCWGG	1 cut(s)	614
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	6 cut(s)	19, 56, 506, 614, 805, 923
NciI	CCSGG	2 cut(s)	264, 677
NdeII	GATC	5 cut(s)	151, 277, 290, 844, 982
NlaIII	CATG	4 cut(s)	158, 199, 400, 589
NlaIV	GGNNCC	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	624
PctI	GAATGC	2 cut(s)	603, 610
PfeI	GAWTC	2 cut(s)	107, 814
PfoI	TCCNGGA	1 cut(s)	675
PkrI	GCNGC	9 cut(s)	15, 18, 21, 58, 61, 226, 380, 532, 916
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	612
PspEI	GGTNACC	1 cut(s)	266
PspFI	CCCAGC	2 cut(s)	638, 722
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	2 cut(s)	290, 844
PvuII	CAGCTG	3 cut(s)	22, 59, 306
RsaI	GTAC	2 cut(s)	34, 697
RsaNI	GTAC	2 cut(s)	33, 696
RseI	CAYNNNNRTG	1 cut(s)	666
SacII	CCGCGG	1 cut(s)	382
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	2 cut(s)	540, 888
SatI	GCNGC	9 cut(s)	14, 17, 20, 57, 60, 225, 379, 531, 915
Sau3AI	GATC	5 cut(s)	151, 277, 290, 844, 982
Sau96I	GGNCC	1 cut(s)	202
ScrFI	CCNGG	3 cut(s)	264, 614, 677
SduI	GDGCHC	1 cut(s)	762
SfaNI	GCATC	6 cut(s)	121, 509, 659, 709, 727, 913
Sfr303I	CCGCGG	1 cut(s)	382
SgrBI	CCGCGG	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	666
Sse9I	AATT	9 cut(s)	352, 407, 423, 541, 741, 772, 871, 936, 966
SsiI	CCGC	4 cut(s)	260, 379, 381, 636
SspMI	CTAG	1 cut(s)	842
StyD4I	CCNGG	3 cut(s)	262, 612, 675
TaaI	ACNGT	4 cut(s)	37, 491, 665, 703
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	3 cut(s)	144, 216, 547
TasI	AATT	9 cut(s)	352, 407, 423, 541, 741, 772, 871, 936, 966
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	2 cut(s)	107, 814
Tru1I	TTAA	2 cut(s)	540, 888
Tru9I	TTAA	2 cut(s)	540, 888
TscAI	CASTG	4 cut(s)	42, 117, 668, 708
TseI	GCWGC	8 cut(s)	13, 16, 19, 56, 59, 224, 530, 914
TspDTI	ATGAA	3 cut(s)	17, 375, 574
TspRI	CASTG	4 cut(s)	42, 117, 668, 708
XapI	RAATTY	3 cut(s)	423, 772, 871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278
XspI	CTAG	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.