Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002705

Physical Location & Seq

Genomic Coordinates Reverse (-)

18747688 .. 18751960

Gene Structure 4273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023141

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGAAGAAGCAGCAGCAGCAGCTGAAGCTGAATGTGGGAACAGTGTTGGTGGTGGCATTGGTAGCTGCCTTTGTCAATCTGAAACTCAATGTGGGTGCTTTGAGTTTGAACGAATCAGTGAACACTGAGAGAAAAGATGCAGTCTTGTTTGACAACGATCATGTCTCAGCCTCAGCCTCACCGACACAGCCTCAGCCTCTCATGGTGGCCCTCACTCTTATCGACAGCGCTGCTTCTAAAGGAGCTGTCTGTTTGGATGGAACGCTGCCCGGTTACCATCTGGATCGTGGGTCTGGATCCGGTGCAAACAGCTGGCTCATTCAGTTGGAGGGAGGTGGGTGGTGTAATACTATCAGAAATTGTGTTTATCGCAAGACCACTCGCCGGGGTTCATCCAAATACATGGAAAAGCAATTACCATTCACAGGAATTTTGAGCAATAAACCTGAAGAAAACCCCGATTTCTTCAACTGGAACAGGGTCAAGCTACGATACTGTGATGGCGCATCTTTTGCCGGAGACAGCCAGAATGAGGCTGCACAACTTAATTTTCGAGGGCAAAAGATTTGGTTGGTTGCTATGGAAGAGTTGATGTCTAAGGGAATGCAGAATGCTAACCAGGCTCTTCTGTCTGGATGTTCCGCTGGGGGTCTGGCATCCATACTACACTGTGATGAGTTCCGGGACTTGTTTCCAACCAGTACCACAGTGAAATGTCTGAGTGATGCTGGGATGTTCCTTGATGCAATTGATGTATCTGGTGGGCACACACTAAGGAATTTGTATGCGGGAGTAGTTAGCTTGCAGGAAGTGCAAAAGAATCTTCCGAAGACTTGTATCAACCACCTAGATCCAACTTCGTGCTTTTTTCCTCAGAATTTGGTCGCAAATGTTAAGACGCCAATGTTTCTTCTAAATGCAGCCTATGATGCTTGGCAGCTCCAAGCTAGTTTAGCCCCTCCATCTGCTGATCCTAATGGTTTATGGAATGAATGCAAATCAAACCATGCAAATTGTAATTTATCCCAGATCCAGTTTCTCCAAGATTTCAGGAATCAAATGCTCAGTGCTGTGAAAGATTTCTCAATGTCCCGTGAAAATGGTTTATTCATAAACTCTTGCTTTGCTCACTGCCAGTCTGAGAGACAAGATACATGGTTTGCTGATGATTCTCCTGTTCTTGAAAACCAGGCAATTGCACTGTCTGTTGGAGACTGGTACTTTGATCGAAGGACGGTTAAAGCTATTGACTGTGAATACCCCTGTGATAGCACCTGTCACAATCTTAACTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

433

Amino Acids

47.61

Weight (kDa)

5.93

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	64 - 427	4.5e-174	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46930 AT3G62060 AT3G62060
fragaria_vesca	FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120
malus_domestica	MD09G1291500.v1.1
prunus_persica	Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1
pyrus_communis	pycom09g19940
rosa_chinensis	RchiOBHm_Chr3g0485621 RchiOBHm_Chr6g0247841 RchiOBHm_Chr6g0247851
rosa_laevigata	RLG00000015174 RLG00000023141
rosa_multiflora	Rmu_co8199800.1_g000001 Rmu_sc0001272.1_g000005 Rmu_sc0004711.1_g000007
rosa_roxburghii	Rroxscaffold_6G00396580 Rroxscaffold_6G00396890 Rroxscaffold_7G00213600
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268800 Rh3BG304500 Rh3CG303000 Rh3DG299400 Rh6CG037700 Rh6DG034700
rosa_wichuraiana	Rw3G023980 Rw6G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	642, 788
AclWI	GGATC	6 cut(s)	291, 291, 304, 845, 965, 1024
AcsI	RAATTY	3 cut(s)	429, 778, 877
AcuI	CTGAAG	2 cut(s)	44, 468
AcyI	GRCGYC	1 cut(s)	899
AfaI	GTAC	2 cut(s)	703, 1220
AfeI	AGCGCT	1 cut(s)	229
AfiI	CCNNNNNNNGG	3 cut(s)	384, 425, 532
AgsI	TTSAA	4 cut(s)	109, 469, 1184, 1294
AjnI	CCWGG	2 cut(s)	618, 1188
Alw26I	GTCTC	4 cut(s)	169, 513, 1138, 1206
AlwI	GGATC	6 cut(s)	291, 291, 304, 845, 965, 1024
AlwNI	CAGNNNCTG	1 cut(s)	22
Aor51HI	AGCGCT	1 cut(s)	229
AoxI	GGCC	1 cut(s)	207
ApoI	RAATTY	3 cut(s)	429, 778, 877
ArsI	GACNNNNNNTTYG	2 cut(s)	1205, 1237
Asp700I	GAANNNNTTC	1 cut(s)	1079
AspLEI	GCGC	2 cut(s)	230, 506
AspS9I	GGNCC	1 cut(s)	208
AsuC2I	CCSGG	3 cut(s)	270, 386, 683
AsuHPI	GGTGA	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	768
BamHI	GGATCC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	836
BbvCI	CCTCAGC	2 cut(s)	172, 192
BccI	CCATC	4 cut(s)	251, 285, 494, 970
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	2 cut(s)	620, 1190
BcnI	CCSGG	3 cut(s)	270, 386, 683
BcoDI	GTCTC	4 cut(s)	169, 513, 1138, 1206
BfaI	CTAG	2 cut(s)	848, 948
BfoI	RGCGCY	1 cut(s)	231
Bme1390I	CCNGG	5 cut(s)	270, 386, 620, 683, 1190
BmgT120I	GGNCC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	5 cut(s)	270, 386, 620, 683, 1190
BmsI	GCATC	6 cut(s)	127, 515, 665, 715, 733, 919
BpiI	GAAGAC	1 cut(s)	836
Bpu10I	CCTNAGC	2 cut(s)	172, 192
BpuMI	CCSGG	3 cut(s)	270, 386, 683
BsaHI	GRCGYC	1 cut(s)	899
BsaJI	CCNNGG	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	3 cut(s)	384, 425, 532
Bse1I	ACTGG	5 cut(s)	476, 699, 1033, 1135, 1220
BseBI	CCWGG	2 cut(s)	620, 1190
BseDI	CCNNGG	1 cut(s)	385
BseGI	GGATG	5 cut(s)	262, 392, 641, 656, 738
BseLI	CCNNNNNNNGG	3 cut(s)	384, 425, 532
BseMII	CTCAG	8 cut(s)	117, 180, 186, 206, 710, 887, 1078, 1131
BseNI	ACTGG	5 cut(s)	476, 699, 1033, 1135, 1220
BseSI	GKGCMC	1 cut(s)	768
BseYI	CCCAGC	2 cut(s)	644, 728
BsgI	GTGCAG	1 cut(s)	522
BshFI	GGCC	1 cut(s)	209
BsiSI	CCGG	5 cut(s)	270, 300, 385, 516, 682
BslFI	GGGAC	2 cut(s)	698, 1075
BslI	CCNNNNNNNGG	3 cut(s)	384, 425, 532
BsmAI	GTCTC	4 cut(s)	169, 513, 1138, 1206
BsmFI	GGGAC	2 cut(s)	698, 1075
BsmI	GAATGC	3 cut(s)	609, 616, 998
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	768
Bsp143I	GATC	7 cut(s)	157, 283, 296, 850, 970, 1029, 1225
BspACI	CCGC	2 cut(s)	642, 788
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	8 cut(s)	118, 179, 185, 205, 711, 886, 1077, 1132
BspLI	GGNNCC	1 cut(s)	298
BspPI	GGATC	6 cut(s)	291, 291, 304, 845, 965, 1024
BspQI	GCTCTTC	1 cut(s)	630
BsrI	ACTGG	5 cut(s)	476, 699, 1033, 1135, 1220
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	7 cut(s)	157, 283, 296, 850, 970, 1029, 1225
BssNI	GRCGYC	1 cut(s)	899
Bst2UI	CCWGG	2 cut(s)	620, 1190
Bst4CI	ACNGT	7 cut(s)	43, 497, 671, 709, 1203, 1237, 1253
Bst6I	CTCTTC	2 cut(s)	579, 630
BstACI	GRCGYC	1 cut(s)	899
BstAPI	GCANNNNNTGC	2 cut(s)	512, 811
BstC8I	GCNNGC	2 cut(s)	314, 803
BstEII	GGTNACC	1 cut(s)	272
BstF5I	GGATG	5 cut(s)	262, 392, 641, 656, 738
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	2 cut(s)	230, 506
BstKTI	GATC	7 cut(s)	160, 286, 299, 853, 973, 1032, 1228
BstMAI	GTCTC	4 cut(s)	169, 513, 1138, 1206
BstMBI	GATC	7 cut(s)	157, 283, 296, 850, 970, 1029, 1225
BstMWI	GCNNNNNNNGC	9 cut(s)	16, 19, 25, 62, 512, 620, 811, 929, 953
BstNI	CCWGG	2 cut(s)	620, 1190
BstPI	GGTNACC	1 cut(s)	272
BstSCI	CCNGG	5 cut(s)	268, 384, 618, 681, 1188
BstSLI	GKGCMC	1 cut(s)	768
BstV2I	GAAGAC	1 cut(s)	836
BstX2I	RGATCY	3 cut(s)	296, 850, 1029
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	3 cut(s)	296, 850, 1029
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	5 cut(s)	262, 392, 641, 656, 738
BtsI	GCAGTG	1 cut(s)	1129
BtsIMutI	CAGTG	8 cut(s)	48, 123, 123, 667, 714, 1072, 1129, 1199
Cac8I	GCNNGC	2 cut(s)	314, 803
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	2 cut(s)	230, 506
Cfr13I	GGNCC	1 cut(s)	208
CseI	GACGC	1 cut(s)	907
Csp6I	GTAC	2 cut(s)	702, 1219
CviAII	CATG	5 cut(s)	161, 202, 403, 1007, 1155
CviQI	GTAC	2 cut(s)	702, 1219
DpnI	GATC	7 cut(s)	159, 285, 298, 852, 972, 1031, 1227
DpnII	GATC	7 cut(s)	157, 283, 296, 850, 970, 1029, 1225
Eam1104I	CTCTTC	2 cut(s)	579, 630
EarI	CTCTTC	2 cut(s)	579, 630
Eco47III	AGCGCT	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	44, 468
Eco91I	GGTNACC	1 cut(s)	272
EcoO65I	GGTNACC	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	618, 1188
FaeI	CATG	5 cut(s)	164, 205, 406, 1010, 1158
FaqI	GGGAC	2 cut(s)	698, 1075
FatI	CATG	5 cut(s)	160, 201, 402, 1006, 1154
FauI	CCCGC	1 cut(s)	781
FokI	GGATG	5 cut(s)	269, 379, 643, 648, 745
FspBI	CTAG	2 cut(s)	848, 948
GlaI	GCGC	2 cut(s)	229, 505
GsaI	CCCAGC	2 cut(s)	648, 732
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	5 cut(s)	270, 300, 385, 516, 682
HgaI	GACGC	1 cut(s)	907
HhaI	GCGC	2 cut(s)	230, 506
Hin1I	GRCGYC	1 cut(s)	899
Hin1II	CATG	5 cut(s)	164, 205, 406, 1010, 1158
Hin6I	GCGC	2 cut(s)	228, 504
HinP1I	GCGC	2 cut(s)	228, 504
HinfI	GANTC	4 cut(s)	113, 820, 1054, 1169
HpaII	CCGG	5 cut(s)	270, 300, 385, 516, 682
HphI	GGTGA	1 cut(s)	171
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	6 cut(s)	81, 356, 720, 828, 876, 1141
Hpy188III	TCNNGA	5 cut(s)	281, 294, 633, 1051, 1181
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	1224
HpyCH4III	ACNGT	7 cut(s)	43, 497, 671, 709, 1203, 1237, 1253
HpyF10VI	GCNNNNNNNGC	9 cut(s)	16, 19, 25, 62, 512, 620, 811, 929, 953
Hsp92I	GRCGYC	1 cut(s)	899
Hsp92II	CATG	5 cut(s)	164, 205, 406, 1010, 1158
HspAI	GCGC	2 cut(s)	228, 504
Kzo9I	GATC	7 cut(s)	157, 283, 296, 850, 970, 1029, 1225
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	2 cut(s)	242, 945
LweI	GCATC	6 cut(s)	127, 515, 665, 715, 733, 919
MaeI	CTAG	2 cut(s)	848, 948
MaeIII	GTNAC	2 cut(s)	272, 1277
MalI	GATC	7 cut(s)	159, 285, 298, 852, 972, 1031, 1227
MboI	GATC	7 cut(s)	157, 283, 296, 850, 970, 1029, 1225
MboII	GAAGA	8 cut(s)	16, 457, 461, 596, 617, 815, 841, 902
MfeI	CAATTG	2 cut(s)	747, 1194
MflI	RGATCY	3 cut(s)	296, 850, 1029
MhlI	GDGCHC	1 cut(s)	768
MmeI	TCCRAC	4 cut(s)	306, 719, 878, 1189
MroXI	GAANNNNTTC	1 cut(s)	1079
MseI	TTAA	4 cut(s)	546, 894, 1239, 1287
MslI	CAYNNNNRTG	1 cut(s)	672
MspA1I	CMGCKG	3 cut(s)	22, 312, 644
MspI	CCGG	5 cut(s)	270, 300, 385, 516, 682
MspR9I	CCNGG	5 cut(s)	270, 386, 620, 683, 1190
MunI	CAATTG	2 cut(s)	747, 1194
Mva1269I	GAATGC	3 cut(s)	609, 616, 998
MvaI	CCWGG	2 cut(s)	620, 1190
MwoI	GCNNNNNNNGC	9 cut(s)	16, 19, 25, 62, 512, 620, 811, 929, 953
NciI	CCSGG	3 cut(s)	270, 386, 683
NdeII	GATC	7 cut(s)	157, 283, 296, 850, 970, 1029, 1225
NlaIII	CATG	5 cut(s)	164, 205, 406, 1010, 1158
NlaIV	GGNNCC	1 cut(s)	298
NmuCI	GTSAC	1 cut(s)	1277
PciSI	GCTCTTC	1 cut(s)	630
PctI	GAATGC	3 cut(s)	609, 616, 998
PdmI	GAANNNNTTC	1 cut(s)	1079
PfeI	GAWTC	4 cut(s)	113, 820, 1054, 1169
PfoI	TCCNGGA	1 cut(s)	681
Psp6I	CCWGG	2 cut(s)	618, 1188
PspEI	GGTNACC	1 cut(s)	272
PspFI	CCCAGC	2 cut(s)	644, 728
PspGI	CCWGG	2 cut(s)	618, 1188
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	3 cut(s)	296, 850, 1029
PvuII	CAGCTG	2 cut(s)	22, 312
RsaI	GTAC	2 cut(s)	703, 1220
RsaNI	GTAC	2 cut(s)	702, 1219
RseI	CAYNNNNRTG	1 cut(s)	672
SapI	GCTCTTC	1 cut(s)	630
SaqAI	TTAA	4 cut(s)	546, 894, 1239, 1287
Sau3AI	GATC	7 cut(s)	157, 283, 296, 850, 970, 1029, 1225
Sau96I	GGNCC	1 cut(s)	208
ScrFI	CCNGG	5 cut(s)	270, 386, 620, 683, 1190
SduI	GDGCHC	1 cut(s)	768
SfaNI	GCATC	6 cut(s)	127, 515, 665, 715, 733, 919
SmiMI	CAYNNNNRTG	1 cut(s)	672
SsiI	CCGC	2 cut(s)	642, 788
SspMI	CTAG	2 cut(s)	848, 948
StyD4I	CCNGG	5 cut(s)	268, 384, 618, 681, 1188
TaaI	ACNGT	7 cut(s)	43, 497, 671, 709, 1203, 1237, 1253
TaqI	TCGA	3 cut(s)	222, 553, 1228
TfiI	GAWTC	4 cut(s)	113, 820, 1054, 1169
Tru1I	TTAA	4 cut(s)	546, 894, 1239, 1287
Tru9I	TTAA	4 cut(s)	546, 894, 1239, 1287
TscAI	CASTG	8 cut(s)	48, 123, 130, 674, 714, 1072, 1136, 1206
TseFI	GTSAC	1 cut(s)	1277
Tsp45I	GTSAC	1 cut(s)	1277
TspDTI	ATGAA	4 cut(s)	17, 381, 1005, 1099
TspRI	CASTG	8 cut(s)	48, 123, 130, 674, 714, 1072, 1136, 1206
XapI	RAATTY	3 cut(s)	429, 778, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	1079
XspI	CTAG	2 cut(s)	848, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.