Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002705

Physical Location & Seq

Genomic Coordinates Forward (+)

113104 .. 121074

Gene Structure 7971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G001300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGAAGCCGCAGCAGAAAGTAAGTGTATGTTGTTGTTTGGGTTTGTTGGTGGTGGCATTGGCGGCTGCCTTGAAGGAGAAGGAGAAAGAGCAAGTGTTGTGGTCCAAGTCTTGGTTAGACTTAGCGGACAAAGATGCGGCGGACTCAGCCTCCTCAGCCTTACCCACACAGACACAGACGCAGCCTCCTCTCAATCTCATGGTTCCCCTCACTCTCATCGACTCTGCTGCTTCTAAAGGAGCTGTCTGCTTGGATGGCACATTGCCCGGTTACCATCTTCATCCTGGCTATGGATCGGGGGCAAACAGCTGGCTCATTCAGTTGGAGGGAGGTGGGTGGTGTAACTCAATCAGAAATTGTGTTTATCGCAAAACTACTCGCCGCGGTTCATCCAAGTTCATGGAAAAGCAATTACCATTCACAGGAATATTGAGCAATAAAGCGGAAGAAAACCCTGATTTCTTCAACTGGAACAGGGTCAAGCTACGTTACTGTGATGGGGCTTCTTTTAGTGGAGACAGTCAGAATGAGGCTGCACAACTTCATTTTCGAGGGCAACGGATATGGTTAGCCGCTATGGAAGAGTTAATGTCCAAAGGAATGCAGAAAGCTGACCAGGCTCTTCTTTCTGGATGTTCTGCTGGGGGTCTGGCATCCATACTACACTGTGATGAGTTCCAAGACTTGTTTCCCGAAACTACCAGAGTGAAATGTCTAAGTGATGCTGGAATGTTCCTTGATGCAATTGATGTATCTGGTGGCCACACTCTAAAGAATTTGTATGCTGGTGTGGTTAGCTTGCAGGAAGTGGAAAAAAATCTGCCAAAGACTTGCATCGACCACCTAGACCCAACTTCGTGCTTCTTTCCTCAAAATTTGGTTGCAAATGTTAAGACTCCCATGTTTCTTCTGAATGCAGCCTATGATGCATGGCAGGTTCAAGCTAGTTTAGCCCCTCCATCTGCAGATCCTCGTGGCTTATGGGGTGCATGCAAATCAAACCATGCACTTTGTAATTCATCCCAAATCCAGTTTTTCCAAGACTTCAGGAATCAAATGCTCAATGCTGTTAGAGATTTCTCAGTGTCCACTAAAAATGGTTTATTCATCAATTCCTGCTTTGCTCACTGCCAATCTGAGAGACAAGATACATGGTTTGCTGATGATTCTCCTGTTCTTGGAAACAGGGCAATTGCATTGTCTGTTGGAGACTGGTACTTTGATCGACTGCCGGTTAAAGCTATTGACTGTGCATACCCCTGTGATAACACCTGCCACAATCTAATGTTCAACGAAGATTTATCTTCCAGTTCCATGACATATTCTCAATCCACAAGGTTGTCTTTTACTGTGCTAAATCTGCCAAGTGCCTTGATGGTGCCCATAATATGTTCCAGATGCATCATGTGGTTTCATTCTGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

476

Amino Acids

52.34

Weight (kDa)

6.21

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46930 AT3G62060 AT3G62060
fragaria_vesca	FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120
malus_domestica	MD09G1291500.v1.1
prunus_persica	Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1
pyrus_communis	pycom09g19940
rosa_chinensis	RchiOBHm_Chr3g0485621 RchiOBHm_Chr6g0247841 RchiOBHm_Chr6g0247851
rosa_laevigata	RLG00000015174 RLG00000023141
rosa_multiflora	Rmu_co8199800.1_g000001 Rmu_sc0001272.1_g000005 Rmu_sc0004711.1_g000007
rosa_roxburghii	Rroxscaffold_6G00396580 Rroxscaffold_6G00396890 Rroxscaffold_7G00213600
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268800 Rh3BG304500 Rh3CG303000 Rh3DG299400 Rh6CG037700 Rh6DG034700
rosa_wichuraiana	Rw3G023980 Rw6G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1280
Acc36I	ACCTGC	2 cut(s)	925, 1280
AccB1I	GGYRCC	1 cut(s)	1378
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccII	CGCG	1 cut(s)	384
AciI	CCGC	9 cut(s)	8, 62, 125, 137, 140, 382, 384, 443, 573
AclWI	GGATC	2 cut(s)	301, 962
AcoI	YGGCCR	1 cut(s)	760
AcsI	RAATTY	2 cut(s)	775, 874
AcuI	CTGAAG	1 cut(s)	1030
AfaI	GTAC	1 cut(s)	1217
AfiI	CCNNNNNNNGG	4 cut(s)	111, 290, 422, 1178
AgsI	TTSAA	4 cut(s)	73, 466, 941, 1291
AjnI	CCWGG	2 cut(s)	283, 615
AjuI	GAANNNNNNNTTGG	2 cut(s)	672, 704
AluBI	AGCT	7 cut(s)	242, 309, 484, 611, 798, 944, 1241
AluI	AGCT	7 cut(s)	242, 309, 484, 611, 798, 944, 1241
Alw26I	GTCTC	3 cut(s)	510, 1135, 1203
AlwI	GGATC	2 cut(s)	301, 962
AoxI	GGCC	1 cut(s)	760
ApeKI	GCWGC	6 cut(s)	10, 65, 181, 227, 533, 917
ApoI	RAATTY	2 cut(s)	775, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	1202, 1234
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	1383
BalI	TGGCCA	1 cut(s)	762
BanI	GGYRCC	1 cut(s)	1378
BauI	CACGAG	1 cut(s)	972
BbvCI	CCTCAGC	1 cut(s)	154
BbvI	GCAGC	6 cut(s)	22, 52, 193, 214, 520, 929
BccI	CCATC	5 cut(s)	248, 282, 491, 967, 1369
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BciT130I	CCWGG	2 cut(s)	285, 617
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	3 cut(s)	510, 1135, 1203
BfaI	CTAG	2 cut(s)	845, 945
BfmI	CTRYAG	1 cut(s)	963
BfuAI	ACCTGC	2 cut(s)	925, 1280
Bme1390I	CCNGG	3 cut(s)	267, 285, 617
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	204, 1380
BmrFI	CCNGG	3 cut(s)	267, 285, 617
BmsI	GCATC	8 cut(s)	124, 662, 712, 730, 843, 916, 1388, 1410
Bpu10I	CCTNAGC	1 cut(s)	154
BpuMI	CCSGG	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	382
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 169, 199
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 290, 422, 1178
Bse118I	RCCGGY	1 cut(s)	1231
Bse1I	ACTGG	4 cut(s)	473, 1030, 1217, 1308
Bse3DI	GCAATG	1 cut(s)	260
BseBI	CCWGG	2 cut(s)	285, 617
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	6 cut(s)	259, 280, 389, 638, 653, 1019
BseLI	CCNNNNNNNGG	4 cut(s)	111, 290, 422, 1178
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	4 cut(s)	159, 168, 1095, 1128
BseNI	ACTGG	4 cut(s)	473, 1030, 1217, 1308
BseRI	GAGGAG	2 cut(s)	142, 177
BseSI	GKGCMC	1 cut(s)	1383
BseXI	GCAGC	6 cut(s)	22, 52, 193, 214, 520, 929
BseYI	CCCAGC	1 cut(s)	641
BsgI	GTGCAG	1 cut(s)	519
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	762
BshNI	GGYRCC	1 cut(s)	1378
BsiSI	CCGG	2 cut(s)	267, 1232
BslI	CCNNNNNNNGG	4 cut(s)	111, 290, 422, 1178
BsmAI	GTCTC	3 cut(s)	510, 1135, 1203
BsmI	GAATGC	2 cut(s)	606, 919
BsnI	GGCC	1 cut(s)	762
Bsp1286I	GDGCHC	1 cut(s)	1383
Bsp143I	GATC	3 cut(s)	293, 967, 1222
BspACI	CCGC	9 cut(s)	8, 62, 125, 137, 140, 382, 384, 443, 573
BspANI	GGCC	1 cut(s)	762
BspCNI	CTCAG	4 cut(s)	158, 167, 1094, 1129
BspFNI	CGCG	1 cut(s)	384
BspLI	GGNNCC	2 cut(s)	204, 1380
BspMAI	CTGCAG	1 cut(s)	967
BspMI	ACCTGC	2 cut(s)	925, 1280
BspPI	GGATC	2 cut(s)	301, 962
BspQI	GCTCTTC	1 cut(s)	627
BspT107I	GGYRCC	1 cut(s)	1378
BsrDI	GCAATG	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	1231
BsrI	ACTGG	4 cut(s)	473, 1030, 1217, 1308
BssAI	RCCGGY	1 cut(s)	1231
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	293, 967, 1222
BssSI	CACGAG	1 cut(s)	972
Bst2BI	CACGAG	1 cut(s)	972
Bst2UI	CCWGG	2 cut(s)	285, 617
Bst4CI	ACNGT	5 cut(s)	494, 521, 668, 1250, 1351
Bst6I	CTCTTC	2 cut(s)	576, 627
BstC8I	GCNNGC	3 cut(s)	311, 800, 991
BstDEI	CTNAG	6 cut(s)	121, 145, 154, 716, 1081, 1137
BstDSI	CCRYGG	1 cut(s)	382
BstEII	GGTNACC	1 cut(s)	269
BstF5I	GGATG	6 cut(s)	259, 280, 389, 638, 653, 1019
BstFNI	CGCG	1 cut(s)	384
BstKTI	GATC	3 cut(s)	296, 970, 1225
BstMAI	GTCTC	3 cut(s)	510, 1135, 1203
BstMBI	GATC	3 cut(s)	293, 967, 1222
BstMWI	GCNNNNNNNGC	8 cut(s)	62, 146, 155, 255, 617, 926, 950, 1360
BstNI	CCWGG	2 cut(s)	285, 617
BstNSI	RCATGY	1 cut(s)	993
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	3 cut(s)	265, 283, 615
BstSFI	CTRYAG	1 cut(s)	963
BstSLI	GKGCMC	1 cut(s)	1383
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	6 cut(s)	22, 52, 193, 214, 520, 929
BstX2I	RGATCY	1 cut(s)	967
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	967
BsuRI	GGCC	1 cut(s)	762
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	6 cut(s)	259, 280, 389, 638, 653, 1019
BtsI	GCAGTG	1 cut(s)	1126
BtsIMutI	CAGTG	3 cut(s)	664, 1089, 1126
BveI	ACCTGC	2 cut(s)	925, 1280
Cac8I	GCNNGC	3 cut(s)	311, 800, 991
Cfr10I	RCCGGY	1 cut(s)	1231
Cfr13I	GGNCC	1 cut(s)	102
Cfr42I	CCGCGG	1 cut(s)	385
CseI	GACGC	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	1216
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviAII	CATG	9 cut(s)	199, 400, 901, 930, 990, 1004, 1152, 1315, 1405
CviQI	GTAC	1 cut(s)	1216
DdeI	CTNAG	6 cut(s)	121, 145, 154, 716, 1081, 1137
DpnI	GATC	3 cut(s)	295, 969, 1224
DpnII	GATC	3 cut(s)	293, 967, 1222
EaeI	YGGCCR	1 cut(s)	760
Eam1104I	CTCTTC	2 cut(s)	576, 627
EarI	CTCTTC	2 cut(s)	576, 627
EciI	GGCGGA	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	1030
Eco91I	GGTNACC	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	283, 615
EcoT22I	ATGCAT	2 cut(s)	931, 1403
FaeI	CATG	9 cut(s)	202, 403, 904, 933, 993, 1007, 1155, 1318, 1408
FalI	AAGNNNNNCTT	2 cut(s)	1327, 1359
FatI	CATG	9 cut(s)	198, 399, 900, 929, 989, 1003, 1151, 1314, 1404
FokI	GGATG	6 cut(s)	266, 267, 376, 640, 645, 1006
FspBI	CTAG	2 cut(s)	845, 945
GsaI	CCCAGC	1 cut(s)	645
HaeIII	GGCC	1 cut(s)	762
HapII	CCGG	2 cut(s)	267, 1232
HgaI	GACGC	1 cut(s)	187
Hin1II	CATG	9 cut(s)	202, 403, 904, 933, 993, 1007, 1155, 1318, 1408
HinfI	GANTC	5 cut(s)	143, 221, 895, 1051, 1166
HpaII	CCGG	2 cut(s)	267, 1232
Hpy166II	GTNNAC	1 cut(s)	1089
Hpy188I	TCNGA	4 cut(s)	353, 525, 912, 1138
Hpy188III	TCNNGA	4 cut(s)	630, 692, 1048, 1395
Hpy8I	GTNNAC	1 cut(s)	1089
HpyAV	CCTTC	2 cut(s)	67, 73
HpyCH4III	ACNGT	5 cut(s)	494, 521, 668, 1250, 1351
HpyCH4IV	ACGT	1 cut(s)	487
HpyF10VI	GCNNNNNNNGC	8 cut(s)	62, 146, 155, 255, 617, 926, 950, 1360
HpyF3I	CTNAG	6 cut(s)	121, 145, 154, 716, 1081, 1137
HpySE526I	ACGT	1 cut(s)	487
Hsp92II	CATG	9 cut(s)	202, 403, 904, 933, 993, 1007, 1155, 1318, 1408
KspI	CCGCGG	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	293, 967, 1222
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	6 cut(s)	22, 52, 193, 214, 520, 929
LweI	GCATC	8 cut(s)	124, 662, 712, 730, 843, 916, 1388, 1410
MaeI	CTAG	2 cut(s)	845, 945
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	3 cut(s)	269, 341, 488
MalI	GATC	3 cut(s)	295, 969, 1224
MboI	GATC	3 cut(s)	293, 967, 1222
MboII	GAAGA	8 cut(s)	269, 454, 458, 593, 614, 899, 1296, 1307
MfeI	CAATTG	2 cut(s)	744, 1191
MflI	RGATCY	1 cut(s)	967
MhlI	GDGCHC	1 cut(s)	1383
MlsI	TGGCCA	1 cut(s)	762
MluCI	AATT	8 cut(s)	355, 410, 744, 775, 874, 1015, 1111, 1191
MluNI	TGGCCA	1 cut(s)	762
MlyI	GAGTC	3 cut(s)	137, 215, 889
MmeI	TCCRAC	2 cut(s)	303, 1186
Mox20I	TGGCCA	1 cut(s)	762
Mph1103I	ATGCAT	2 cut(s)	931, 1403
MscI	TGGCCA	1 cut(s)	762
MseI	TTAA	3 cut(s)	587, 891, 1236
MslI	CAYNNNNRTG	1 cut(s)	669
Msp20I	TGGCCA	1 cut(s)	762
MspA1I	CMGCKG	2 cut(s)	309, 384
MspI	CCGG	2 cut(s)	267, 1232
MspR9I	CCNGG	3 cut(s)	267, 285, 617
MunI	CAATTG	2 cut(s)	744, 1191
Mva1269I	GAATGC	2 cut(s)	606, 919
MvaI	CCWGG	2 cut(s)	285, 617
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	8 cut(s)	62, 146, 155, 255, 617, 926, 950, 1360
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	3 cut(s)	293, 967, 1222
NlaIII	CATG	9 cut(s)	202, 403, 904, 933, 993, 1007, 1155, 1318, 1408
NlaIV	GGNNCC	2 cut(s)	204, 1380
NsiI	ATGCAT	2 cut(s)	931, 1403
NspI	RCATGY	1 cut(s)	993
PaeI	GCATGC	1 cut(s)	993
PaqCI	CACCTGC	1 cut(s)	1280
PciSI	GCTCTTC	1 cut(s)	627
PctI	GAATGC	2 cut(s)	606, 919
PfeI	GAWTC	2 cut(s)	1051, 1166
PflMI	CCANNNNNTGG	1 cut(s)	111
PleI	GAGTC	3 cut(s)	137, 215, 889
PpsI	GAGTC	3 cut(s)	137, 215, 889
Psp6I	CCWGG	2 cut(s)	283, 615
PspEI	GGTNACC	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	2 cut(s)	283, 615
PspN4I	GGNNCC	2 cut(s)	204, 1380
PspPI	GGNCC	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	967
PsuI	RGATCY	1 cut(s)	967
PvuII	CAGCTG	1 cut(s)	309
RsaI	GTAC	1 cut(s)	1217
RsaNI	GTAC	1 cut(s)	1216
RseI	CAYNNNNRTG	1 cut(s)	669
SacII	CCGCGG	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	3 cut(s)	587, 891, 1236
Sau3AI	GATC	3 cut(s)	293, 967, 1222
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	3 cut(s)	137, 215, 889
ScrFI	CCNGG	3 cut(s)	267, 285, 617
SduI	GDGCHC	1 cut(s)	1383
SfaNI	GCATC	8 cut(s)	124, 662, 712, 730, 843, 916, 1388, 1410
SfcI	CTRYAG	1 cut(s)	963
Sfr303I	CCGCGG	1 cut(s)	385
SgrBI	CCGCGG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	669
SphI	GCATGC	1 cut(s)	993
Sse9I	AATT	8 cut(s)	355, 410, 744, 775, 874, 1015, 1111, 1191
SsiI	CCGC	9 cut(s)	8, 62, 125, 137, 140, 382, 384, 443, 573
SspI	AATATT	1 cut(s)	429
SspMI	CTAG	2 cut(s)	845, 945
StyD4I	CCNGG	3 cut(s)	265, 283, 615
TaaI	ACNGT	5 cut(s)	494, 521, 668, 1250, 1351
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	4 cut(s)	219, 550, 837, 1225
TasI	AATT	8 cut(s)	355, 410, 744, 775, 874, 1015, 1111, 1191
TauI	GCSGC	5 cut(s)	10, 65, 140, 384, 575
TfiI	GAWTC	2 cut(s)	1051, 1166
Tru1I	TTAA	3 cut(s)	587, 891, 1236
Tru9I	TTAA	3 cut(s)	587, 891, 1236
TscAI	CASTG	3 cut(s)	671, 1089, 1133
TseI	GCWGC	6 cut(s)	10, 65, 181, 227, 533, 917
TspDTI	ATGAA	8 cut(s)	17, 269, 378, 388, 533, 1008, 1096, 1403
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	3 cut(s)	671, 1089, 1133
Van91I	CCANNNNNTGG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	2 cut(s)	775, 874
XceI	RCATGY	1 cut(s)	993
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XspI	CTAG	2 cut(s)	845, 945
Zsp2I	ATGCAT	2 cut(s)	931, 1403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.