Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002705

Physical Location & Seq

Genomic Coordinates Forward (+)

3873082 .. 3873859

Gene Structure 778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22218

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGCTGTTCTCTTATCCCTTCTATGAAGCAGATTTCAGGAAGCAAATGCTCAGCACTGTGAAAGATTTCTCAATGACCAGTGAAAATGGTTTATTCATAAACTCTTGCTTTGCTCGCTGCCAGTCTGAGAGACAATCTACATGGTTTGCTGATGATGATTATCCTCTTCTTGAAAACCAGGCAATTGCACTTTTCTGTTGGAGACTGGTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

71

Amino Acids

8.44

Weight (kDa)

4.56

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	10 - 63	3.9e-12	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46930 AT3G62060 AT3G62060
fragaria_vesca	FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120
malus_domestica	MD09G1291500.v1.1
prunus_persica	Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1
pyrus_communis	pycom09g19940
rosa_chinensis	RchiOBHm_Chr3g0485621 RchiOBHm_Chr6g0247841 RchiOBHm_Chr6g0247851
rosa_laevigata	RLG00000015174 RLG00000023141
rosa_multiflora	Rmu_co8199800.1_g000001 Rmu_sc0001272.1_g000005 Rmu_sc0004711.1_g000007
rosa_roxburghii	Rroxscaffold_6G00396580 Rroxscaffold_6G00396890 Rroxscaffold_7G00213600
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268800 Rh3BG304500 Rh3CG303000 Rh3DG299400 Rh6CG037700 Rh6DG034700
rosa_wichuraiana	Rw3G023980 Rw6G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	124, 196
ApeKI	GCWGC	1 cut(s)	117
ArsI	GACNNNNNNTTYG	1 cut(s)	195
Asp700I	GAANNNNTTC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	124, 196
BisI	GCNGC	1 cut(s)	118
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	159
Bse1I	ACTGG	3 cut(s)	78, 121, 210
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	179
BseJI	GATNNNNATC	1 cut(s)	159
BseMII	CTCAG	2 cut(s)	64, 117
BseNI	ACTGG	3 cut(s)	78, 121, 210
BseXI	GCAGC	1 cut(s)	104
BsmAI	GTCTC	2 cut(s)	124, 196
Bsp1720I	GCTNAGC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	63, 118
BsrI	ACTGG	3 cut(s)	78, 121, 210
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	50, 126
BstMAI	GTCTC	2 cut(s)	124, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	104
BtsIMutI	CAGTG	2 cut(s)	54, 85
Cac8I	GCNNGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	1 cut(s)	141
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	2 cut(s)	50, 126
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	177
FaeI	CATG	1 cut(s)	144
FaiI	YATR	3 cut(s)	24, 98, 142
FatI	CATG	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	118
Hin1II	CATG	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	37, 170
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	2 cut(s)	50, 126
Hsp92II	CATG	1 cut(s)	144
LpnPI	CCDG	6 cut(s)	22, 91, 134, 164, 191, 191
Lsp1109I	GCAGC	1 cut(s)	104
MboII	GAAGA	1 cut(s)	158
MfeI	CAATTG	1 cut(s)	183
MluCI	AATT	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	1 cut(s)	174
MroXI	GAANNNNTTC	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	179
MunI	CAATTG	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	114
NlaIII	CATG	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SatI	GCNGC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	179
SgeI	CNNG	9 cut(s)	49, 90, 117, 126, 133, 153, 182, 190, 191
Sse9I	AATT	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	177
TaaI	ACNGT	1 cut(s)	58
TasI	AATT	1 cut(s)	183
TscAI	CASTG	2 cut(s)	61, 85
TseI	GCWGC	1 cut(s)	117
TspDTI	ATGAA	2 cut(s)	39, 85
TspRI	CASTG	2 cut(s)	61, 85
XmnI	GAANNNNTTC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.