Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001272.1

Orthogroup ID

OG0002705

Physical Location & Seq

Genomic Coordinates Reverse (-)

19612 .. 24671

Gene Structure 5060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001272.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

atgaagaagcagcagcagcagctgaatgtgggtacagtgttggtggtggcattggcagctgcctttgtcaatctgaaactcaatgtgggtgctttgagtttgaacgaatcagtgaacgttgggagaaaagatgcagtcttgttcgacaacgatcatgtctcagcctcagcctcaccgacacagcctcagcctctcatggtggccctcactcttatcgacagcgctgcttctaaaggagctgtctgtttggatggaacaccgcccggttaccatctggatcgtgggtctggatccggtgcaaacagctggctcattcagttggagggaggtgggtggtgtaatactatcagaaattgtgtttatcgcaagaccactcgccgcggttcatccaaccacatggaaaagcaattaccattcacaggaattttgagcaataaacctgaagaaaaccccgacttcttcaactggaacagggtcaagctacgatactgtgatggggcatcttttgccggagacagccagaatgaggctgcacaacttaattttcgagggcaaaagatttggttggttgctatggaagagttgatgtctaagggaatgcagaatgctaaccaggctcttctttctggatgttccgctgggggtctggcatccatactacactgtgatgagttccgggacttgtttccaaccagtaccacagtgaaatgtctgagtgatgctgggatgttccttgatgcaattgatgtatctggtgggcacactctaaggactttgtatgcaggagtagttagcttgcaggaagtgcaaaagaatcttccaaagacctgtatcaaccacctagatccaacttcgtgcttttttcctcagaatttggtcgcaaatgttaagacgccaatgtttcttctaaatgcagcctatgatgcttggcagctccaagctagtttagcccctccatctgctgatcctaatggtttatggaatgaatgcaaatcaaaccatgcaaattgtaatttatcccagatccagtttctccaagatttcaggaatcaaatgctcagtgctgtgaaagatttctcaatgtcccgtgaaaatggtttattcataaactcttgctttgctcactgccagtctgagagacaagatacatggtttgctgatgattctcctgttcttgaaaaccagccaattgcactgtctgttggagactggtactttgatcgaaggacagttaaagctattgactgtgaatacccctgtgatagcagctgtcacaatcttaacttcaaagaggatgtaacttctacgacattgacatattctcagtctgcaaagtcgtctattaccatgctaaatctgctaggtgccttgttgatgcctataacgtgttcgagatgcataacgtggttttcatttgtccactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

474

Amino Acids

52.06

Weight (kDa)

5.94

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46930 AT3G62060 AT3G62060
fragaria_vesca	FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120
malus_domestica	MD09G1291500.v1.1
prunus_persica	Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1
pyrus_communis	pycom09g19940
rosa_chinensis	RchiOBHm_Chr3g0485621 RchiOBHm_Chr6g0247841 RchiOBHm_Chr6g0247851
rosa_laevigata	RLG00000015174 RLG00000023141
rosa_multiflora	Rmu_co8199800.1_g000001 Rmu_sc0001272.1_g000005 Rmu_sc0004711.1_g000007
rosa_roxburghii	Rroxscaffold_6G00396580 Rroxscaffold_6G00396890 Rroxscaffold_7G00213600
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268800 Rh3BG304500 Rh3CG303000 Rh3DG299400 Rh6CG037700 Rh6DG034700
rosa_wichuraiana	Rw3G023980 Rw6G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1364
AccII	CGCG	1 cut(s)	381
AciI	CCGC	4 cut(s)	260, 379, 381, 636
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	6 cut(s)	285, 285, 298, 839, 959, 1018
AcsI	RAATTY	2 cut(s)	423, 871
AcuI	CTGAAG	1 cut(s)	462
AcyI	GRCGYC	1 cut(s)	893
AfaI	GTAC	3 cut(s)	34, 697, 1214
AfeI	AGCGCT	1 cut(s)	223
AfiI	CCNNNNNNNGG	2 cut(s)	419, 526
AflIII	ACRYGT	1 cut(s)	1385
AgsI	TTSAA	4 cut(s)	103, 463, 1178, 1288
AjnI	CCWGG	1 cut(s)	612
Alw26I	GTCTC	4 cut(s)	163, 507, 1132, 1200
AlwI	GGATC	6 cut(s)	285, 285, 298, 839, 959, 1018
AlwNI	CAGNNNCTG	1 cut(s)	22
Aor51HI	AGCGCT	1 cut(s)	223
AoxI	GGCC	1 cut(s)	201
ApoI	RAATTY	2 cut(s)	423, 871
ArsI	GACNNNNNNTTYG	2 cut(s)	1199, 1231
Asp700I	GAANNNNTTC	1 cut(s)	1073
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	202
AsuC2I	CCSGG	2 cut(s)	264, 677
AsuHPI	GGTGA	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	762
BamHI	GGATCC	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	1364
BbvCI	CCTCAGC	2 cut(s)	166, 186
BccI	CCATC	4 cut(s)	245, 279, 488, 964
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	1 cut(s)	614
BcnI	CCSGG	2 cut(s)	264, 677
BcoDI	GTCTC	4 cut(s)	163, 507, 1132, 1200
BfaI	CTAG	3 cut(s)	842, 942, 1361
BfoI	RGCGCY	1 cut(s)	225
Bme1390I	CCNGG	3 cut(s)	264, 614, 677
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	2 cut(s)	292, 1366
BmrFI	CCNGG	3 cut(s)	264, 614, 677
BmsI	GCATC	8 cut(s)	121, 509, 659, 709, 727, 913, 1365, 1385
Bpu10I	CCTNAGC	2 cut(s)	166, 186
BpuMI	CCSGG	2 cut(s)	264, 677
BsaHI	GRCGYC	1 cut(s)	893
BsaJI	CCNNGG	1 cut(s)	379
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 526
Bse1I	ACTGG	5 cut(s)	470, 693, 1027, 1129, 1214
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	6 cut(s)	256, 386, 635, 650, 732, 1300
BseLI	CCNNNNNNNGG	2 cut(s)	419, 526
BseMII	CTCAG	8 cut(s)	174, 180, 200, 704, 881, 1072, 1125, 1337
BseNI	ACTGG	5 cut(s)	470, 693, 1027, 1129, 1214
BseSI	GKGCMC	1 cut(s)	762
BseYI	CCCAGC	2 cut(s)	638, 722
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	1364
BsiSI	CCGG	4 cut(s)	264, 294, 510, 676
BslFI	GGGAC	2 cut(s)	692, 1069
BslI	CCNNNNNNNGG	2 cut(s)	419, 526
BsmAI	GTCTC	4 cut(s)	163, 507, 1132, 1200
BsmFI	GGGAC	2 cut(s)	692, 1069
BsmI	GAATGC	3 cut(s)	603, 610, 992
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	762
Bsp143I	GATC	7 cut(s)	151, 277, 290, 844, 964, 1023, 1219
BspACI	CCGC	4 cut(s)	260, 379, 381, 636
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	8 cut(s)	173, 179, 199, 705, 880, 1071, 1126, 1336
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	292, 1366
BspPI	GGATC	6 cut(s)	285, 285, 298, 839, 959, 1018
BspQI	GCTCTTC	1 cut(s)	624
BspT107I	GGYRCC	1 cut(s)	1364
BsrI	ACTGG	5 cut(s)	470, 693, 1027, 1129, 1214
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	7 cut(s)	151, 277, 290, 844, 964, 1023, 1219
BssNI	GRCGYC	1 cut(s)	893
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	7 cut(s)	37, 491, 665, 703, 1197, 1231, 1247
Bst6I	CTCTTC	2 cut(s)	573, 624
BstACI	GRCGYC	1 cut(s)	893
BstAPI	GCANNNNNTGC	2 cut(s)	506, 805
BstC8I	GCNNGC	2 cut(s)	308, 797
BstDSI	CCRYGG	1 cut(s)	379
BstEII	GGTNACC	1 cut(s)	266
BstF5I	GGATG	6 cut(s)	256, 386, 635, 650, 732, 1300
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	7 cut(s)	154, 280, 293, 847, 967, 1026, 1222
BstMAI	GTCTC	4 cut(s)	163, 507, 1132, 1200
BstMBI	GATC	7 cut(s)	151, 277, 290, 844, 964, 1023, 1219
BstMWI	GCNNNNNNNGC	9 cut(s)	16, 19, 56, 506, 614, 805, 923, 947, 1357
BstNI	CCWGG	1 cut(s)	614
BstPI	GGTNACC	1 cut(s)	266
BstSCI	CCNGG	3 cut(s)	262, 612, 675
BstSLI	GKGCMC	1 cut(s)	762
BstUI	CGCG	1 cut(s)	381
BstX2I	RGATCY	3 cut(s)	290, 844, 1023
BstXI	CCANNNNNNTGG	1 cut(s)	397
BstYI	RGATCY	3 cut(s)	290, 844, 1023
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	379
BtsCI	GGATG	6 cut(s)	256, 386, 635, 650, 732, 1300
BtsI	GCAGTG	1 cut(s)	1123
BtsIMutI	CAGTG	8 cut(s)	42, 117, 661, 708, 1066, 1123, 1193, 1420
Cac8I	GCNNGC	2 cut(s)	308, 797
CaiI	CAGNNNCTG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	202
Cfr42I	CCGCGG	1 cut(s)	382
CseI	GACGC	1 cut(s)	901
Csp6I	GTAC	3 cut(s)	33, 696, 1213
CviAII	CATG	6 cut(s)	155, 196, 397, 1001, 1149, 1348
CviQI	GTAC	3 cut(s)	33, 696, 1213
DpnI	GATC	7 cut(s)	153, 279, 292, 846, 966, 1025, 1221
DpnII	GATC	7 cut(s)	151, 277, 290, 844, 964, 1023, 1219
Eam1104I	CTCTTC	2 cut(s)	573, 624
EarI	CTCTTC	2 cut(s)	573, 624
Eco47III	AGCGCT	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	462
Eco91I	GGTNACC	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	612
EcoT22I	ATGCAT	1 cut(s)	1400
FaeI	CATG	6 cut(s)	158, 199, 400, 1004, 1152, 1351
FaqI	GGGAC	2 cut(s)	692, 1069
FatI	CATG	6 cut(s)	154, 195, 396, 1000, 1148, 1347
FokI	GGATG	6 cut(s)	263, 373, 637, 642, 739, 1307
FspBI	CTAG	3 cut(s)	842, 942, 1361
GlaI	GCGC	1 cut(s)	223
GsaI	CCCAGC	2 cut(s)	642, 726
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	4 cut(s)	264, 294, 510, 676
HgaI	GACGC	1 cut(s)	901
HhaI	GCGC	1 cut(s)	224
Hin1I	GRCGYC	1 cut(s)	893
Hin1II	CATG	6 cut(s)	158, 199, 400, 1004, 1152, 1351
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HinfI	GANTC	4 cut(s)	107, 814, 1048, 1163
HpaII	CCGG	4 cut(s)	264, 294, 510, 676
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	115, 1420
Hpy188I	TCNGA	5 cut(s)	75, 350, 714, 870, 1135
Hpy188III	TCNNGA	6 cut(s)	275, 288, 627, 1045, 1175, 1392
Hpy8I	GTNNAC	2 cut(s)	115, 1420
HpyAV	CCTTC	1 cut(s)	1218
HpyCH4III	ACNGT	7 cut(s)	37, 491, 665, 703, 1197, 1231, 1247
HpyCH4IV	ACGT	3 cut(s)	117, 1385, 1403
HpyF10VI	GCNNNNNNNGC	9 cut(s)	16, 19, 56, 506, 614, 805, 923, 947, 1357
HpySE526I	ACGT	3 cut(s)	117, 1385, 1403
Hsp92I	GRCGYC	1 cut(s)	893
Hsp92II	CATG	6 cut(s)	158, 199, 400, 1004, 1152, 1351
HspAI	GCGC	1 cut(s)	222
KspI	CCGCGG	1 cut(s)	382
Kzo9I	GATC	7 cut(s)	151, 277, 290, 844, 964, 1023, 1219
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	2 cut(s)	236, 939
LweI	GCATC	8 cut(s)	121, 509, 659, 709, 727, 913, 1365, 1385
MaeI	CTAG	3 cut(s)	842, 942, 1361
MaeII	ACGT	3 cut(s)	117, 1385, 1403
MaeIII	GTNAC	3 cut(s)	266, 1271, 1297
MalI	GATC	7 cut(s)	153, 279, 292, 846, 966, 1025, 1221
MboI	GATC	7 cut(s)	151, 277, 290, 844, 964, 1023, 1219
MboII	GAAGA	7 cut(s)	16, 451, 455, 590, 611, 809, 896
MfeI	CAATTG	2 cut(s)	741, 1188
MflI	RGATCY	3 cut(s)	290, 844, 1023
MhlI	GDGCHC	1 cut(s)	762
MluCI	AATT	9 cut(s)	352, 407, 423, 541, 741, 871, 1006, 1012, 1188
MmeI	TCCRAC	5 cut(s)	300, 414, 713, 872, 1183
Mph1103I	ATGCAT	1 cut(s)	1400
MroXI	GAANNNNTTC	1 cut(s)	1073
MseI	TTAA	4 cut(s)	540, 888, 1233, 1281
MslI	CAYNNNNRTG	1 cut(s)	666
MspA1I	CMGCKG	6 cut(s)	22, 59, 306, 381, 638, 1269
MspI	CCGG	4 cut(s)	264, 294, 510, 676
MspR9I	CCNGG	3 cut(s)	264, 614, 677
MunI	CAATTG	2 cut(s)	741, 1188
Mva1269I	GAATGC	3 cut(s)	603, 610, 992
MvaI	CCWGG	1 cut(s)	614
MvnI	CGCG	1 cut(s)	381
MwoI	GCNNNNNNNGC	9 cut(s)	16, 19, 56, 506, 614, 805, 923, 947, 1357
NciI	CCSGG	2 cut(s)	264, 677
NdeII	GATC	7 cut(s)	151, 277, 290, 844, 964, 1023, 1219
NlaIII	CATG	6 cut(s)	158, 199, 400, 1004, 1152, 1351
NlaIV	GGNNCC	2 cut(s)	292, 1366
NmuCI	GTSAC	1 cut(s)	1271
NsiI	ATGCAT	1 cut(s)	1400
PciSI	GCTCTTC	1 cut(s)	624
PctI	GAATGC	3 cut(s)	603, 610, 992
PdmI	GAANNNNTTC	1 cut(s)	1073
PfeI	GAWTC	4 cut(s)	107, 814, 1048, 1163
PfoI	TCCNGGA	1 cut(s)	675
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	612
PspEI	GGTNACC	1 cut(s)	266
PspFI	CCCAGC	2 cut(s)	638, 722
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	2 cut(s)	292, 1366
PspPI	GGNCC	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	22
PsuI	RGATCY	3 cut(s)	290, 844, 1023
PvuII	CAGCTG	4 cut(s)	22, 59, 306, 1269
RsaI	GTAC	3 cut(s)	34, 697, 1214
RsaNI	GTAC	3 cut(s)	33, 696, 1213
RseI	CAYNNNNRTG	1 cut(s)	666
SacII	CCGCGG	1 cut(s)	382
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	4 cut(s)	540, 888, 1233, 1281
Sau3AI	GATC	7 cut(s)	151, 277, 290, 844, 964, 1023, 1219
Sau96I	GGNCC	1 cut(s)	202
ScrFI	CCNGG	3 cut(s)	264, 614, 677
SduI	GDGCHC	1 cut(s)	762
SfaNI	GCATC	8 cut(s)	121, 509, 659, 709, 727, 913, 1365, 1385
Sfr303I	CCGCGG	1 cut(s)	382
SgrBI	CCGCGG	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	666
Sse9I	AATT	9 cut(s)	352, 407, 423, 541, 741, 871, 1006, 1012, 1188
SsiI	CCGC	4 cut(s)	260, 379, 381, 636
SspMI	CTAG	3 cut(s)	842, 942, 1361
StyD4I	CCNGG	3 cut(s)	262, 612, 675
TaaI	ACNGT	7 cut(s)	37, 491, 665, 703, 1197, 1231, 1247
TaiI	ACGT	3 cut(s)	120, 1388, 1406
TaqI	TCGA	5 cut(s)	144, 216, 547, 1222, 1391
TasI	AATT	9 cut(s)	352, 407, 423, 541, 741, 871, 1006, 1012, 1188
TauI	GCSGC	1 cut(s)	381
TfiI	GAWTC	4 cut(s)	107, 814, 1048, 1163
Tru1I	TTAA	4 cut(s)	540, 888, 1233, 1281
Tru9I	TTAA	4 cut(s)	540, 888, 1233, 1281
TscAI	CASTG	7 cut(s)	42, 117, 668, 708, 1066, 1130, 1200
TseFI	GTSAC	1 cut(s)	1271
Tsp45I	GTSAC	1 cut(s)	1271
TspDTI	ATGAA	5 cut(s)	17, 375, 999, 1093, 1401
TspRI	CASTG	7 cut(s)	42, 117, 668, 708, 1066, 1130, 1200
XapI	RAATTY	2 cut(s)	423, 871
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	1073
XspI	CTAG	3 cut(s)	842, 942, 1361
Zsp2I	ATGCAT	1 cut(s)	1400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.