Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002705

Physical Location & Seq

Genomic Coordinates Forward (+)

3513584 .. 3536554

Gene Structure 22971 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG034700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAAAAGCAATTGCCATTCACAGGAATTTTGAGAAATAAACAAAACCCTGATTTCTTCAACTGGAACAGGGTCAAGCTACGATACTGTGATGGGGCATCTTTTACTGGAGACAGGCAAAATATTTGGTTAGTTGCTATTGATGAGTTGATGTCCAAGGGAATGCAGAATGCTAACCAGGCTCGTCTTTCTGGATGTTCCGCTGGGGTTCTGGCATCCATACTACACTGTGATGAGTTCTGGGACTTAATTGATGTATTTGGTGGGCACACTCTAAGGAATTTGAAAGCAGGAGTAGTTAGCTTGCAGGAAGTGCAAAACAATATTCCGAAGACTTGTATCAACCACCTAGATCCAACTTCTGTAATTCTCTATACTAACCAAGCGAGGGCAAATGTTAAGACGCTAATGTTTCTTATAAATGCAGCCTATGATGCTTGGCAGCTCCAAGCTAGTTTAGCCCCTCCATCCGGTGATCCTCATGGTTTATGGAATGAATGGAAATCAAACCATGCAAATTGTAATTCATCACATATCCAGCATCTCCAAGATTTCAGGAAGCAAATGCTCAGCGCTGTGAAAGATTTCTCAATGACCAGTGAAAATGGTTTATTCATAAACTCTTGCTTTGCTCTCTGCCAGTCTGAGAGACAAAATACATGGTTTGCTGATGATTCTCCTCTTCTTGAAAACCAGGCAATTGCACTTTTCTGTTGGAGACTGGTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009987 GO:0016043 GO:0016787 GO:0016788 GO:0030312 GO:0044464 GO:0045229 GO:0052689 GO:0052793 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04310 map04310

Pfam Domains

Protein Families

PAE

Protein Analysis

243

Amino Acids

27.51

Weight (kDa)

6.36

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAE	PF03283	1 - 84	6e-29	Pectinacetylesterase
PAE	PF03283	80 - 235	3.5e-40	Pectinacetylesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002705)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46930 AT3G62060 AT3G62060
fragaria_vesca	FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120 FvH4_1g26120
malus_domestica	MD09G1291500.v1.1
prunus_persica	Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1 Prupe.3G001300_v2.0.a1
pyrus_communis	pycom09g19940
rosa_chinensis	RchiOBHm_Chr3g0485621 RchiOBHm_Chr6g0247841 RchiOBHm_Chr6g0247851
rosa_laevigata	RLG00000015174 RLG00000023141
rosa_multiflora	Rmu_co8199800.1_g000001 Rmu_sc0001272.1_g000005 Rmu_sc0004711.1_g000007
rosa_roxburghii	Rroxscaffold_6G00396580 Rroxscaffold_6G00396890 Rroxscaffold_7G00213600
rosa_rugosa	Rorug03G0220200 Rorug03G0220200
rosa_samantha	Rh3AG268800 Rh3BG304500 Rh3CG303000 Rh3DG299400 Rh6CG037700 Rh6DG034700
rosa_wichuraiana	Rw3G023980 Rw6G003830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	347, 470
AcsI	RAATTY	2 cut(s)	27, 280
AfaI	GTAC	1 cut(s)	726
AfeI	AGCGCT	1 cut(s)	574
AfiI	CCNNNNNNNGG	3 cut(s)	23, 388, 470
AgsI	TTSAA	3 cut(s)	61, 286, 689
AjnI	CCWGG	2 cut(s)	177, 693
AluBI	AGCT	4 cut(s)	79, 303, 445, 452
AluI	AGCT	4 cut(s)	79, 303, 445, 452
Alw26I	GTCTC	3 cut(s)	105, 643, 712
AlwI	GGATC	2 cut(s)	347, 470
Aor51HI	AGCGCT	1 cut(s)	574
ApeKI	GCWGC	2 cut(s)	425, 442
ApoI	RAATTY	2 cut(s)	27, 280
ArsI	GACNNNNNNTTYG	1 cut(s)	711
Asp700I	GAANNNNTTC	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	2 cut(s)	437, 454
BccI	CCATC	2 cut(s)	86, 475
BciT130I	CCWGG	2 cut(s)	179, 695
BcoDI	GTCTC	3 cut(s)	105, 643, 712
BfaI	CTAG	2 cut(s)	350, 453
BfoI	RGCGCY	1 cut(s)	576
BisI	GCNGC	2 cut(s)	426, 443
BlpI	GCTNAGC	1 cut(s)	569
BlsI	GCNGC	2 cut(s)	427, 444
Bme1390I	CCNGG	2 cut(s)	179, 695
BmrFI	CCNGG	2 cut(s)	179, 695
BmsI	GCATC	4 cut(s)	107, 224, 424, 550
BpiI	GAAGAC	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	129
Bpu1102I	GCTNAGC	1 cut(s)	569
BsaJI	CCNNGG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 388, 470
Bse1I	ACTGG	5 cut(s)	68, 112, 597, 640, 726
BseBI	CCWGG	2 cut(s)	179, 695
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	3 cut(s)	200, 215, 467
BseLI	CCNNNNNNNGG	3 cut(s)	23, 388, 470
BseMII	CTCAG	2 cut(s)	583, 636
BseNI	ACTGG	5 cut(s)	68, 112, 597, 640, 726
BseRI	GAGGAG	1 cut(s)	669
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	2 cut(s)	437, 454
BseYI	CCCAGC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	3 cut(s)	23, 388, 470
BsmAI	GTCTC	3 cut(s)	105, 643, 712
BsmFI	GGGAC	1 cut(s)	257
BsmI	GAATGC	2 cut(s)	168, 175
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	352, 475
Bsp1720I	GCTNAGC	1 cut(s)	569
BspACI	CCGC	1 cut(s)	201
BspCNI	CTCAG	2 cut(s)	582, 637
BspPI	GGATC	2 cut(s)	347, 470
BsrI	ACTGG	5 cut(s)	68, 112, 597, 640, 726
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	352, 475
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	2 cut(s)	179, 695
Bst4CI	ACNGT	2 cut(s)	89, 230
Bst6I	CTCTTC	1 cut(s)	687
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	3 cut(s)	275, 569, 645
BstF5I	GGATG	3 cut(s)	200, 215, 467
BstH2I	RGCGCY	1 cut(s)	576
BstHHI	GCGC	1 cut(s)	575
BstKTI	GATC	2 cut(s)	355, 478
BstMAI	GTCTC	3 cut(s)	105, 643, 712
BstMBI	GATC	2 cut(s)	352, 475
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 313, 434, 458
BstNI	CCWGG	2 cut(s)	179, 695
BstSCI	CCNGG	2 cut(s)	177, 693
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	2 cut(s)	437, 454
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BtsCI	GGATG	3 cut(s)	200, 215, 467
BtsIMutI	CAGTG	2 cut(s)	226, 604
Cac8I	GCNNGC	1 cut(s)	305
CfoI	GCGC	1 cut(s)	575
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	1 cut(s)	725
CviAII	CATG	3 cut(s)	482, 512, 660
CviJI	RGCY	7 cut(s)	79, 182, 303, 428, 445, 452, 461
CviKI_1	RGCY	7 cut(s)	79, 182, 303, 428, 445, 452, 461
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	3 cut(s)	275, 569, 645
DpnI	GATC	2 cut(s)	354, 477
DpnII	GATC	2 cut(s)	352, 475
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
Eco130I	CCWWGG	1 cut(s)	156
Eco47III	AGCGCT	1 cut(s)	574
EcoRII	CCWGG	2 cut(s)	177, 693
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	3 cut(s)	485, 515, 663
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	3 cut(s)	481, 511, 659
Fnu4HI	GCNGC	2 cut(s)	426, 443
FokI	GGATG	3 cut(s)	202, 207, 454
Fsp4HI	GCNGC	2 cut(s)	426, 443
FspBI	CTAG	2 cut(s)	350, 453
GlaI	GCGC	1 cut(s)	574
GluI	GCNGC	2 cut(s)	426, 443
GsaI	CCCAGC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	129
HaeII	RGCGCY	1 cut(s)	576
HapII	CCGG	1 cut(s)	471
HgaI	GACGC	1 cut(s)	412
HhaI	GCGC	1 cut(s)	575
Hin1II	CATG	3 cut(s)	485, 515, 663
Hin6I	GCGC	1 cut(s)	573
HinP1I	GCGC	1 cut(s)	573
HinfI	GANTC	1 cut(s)	674
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	1 cut(s)	485
Hpy188I	TCNGA	2 cut(s)	330, 646
Hpy188III	TCNNGA	3 cut(s)	192, 556, 686
HpyCH4III	ACNGT	2 cut(s)	89, 230
HpyCH4V	TGCA	6 cut(s)	166, 307, 316, 425, 515, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 313, 434, 458
HpyF3I	CTNAG	3 cut(s)	275, 569, 645
Hsp92II	CATG	3 cut(s)	485, 515, 663
HspAI	GCGC	1 cut(s)	573
Kzo9I	GATC	2 cut(s)	352, 475
LmnI	GCTCC	1 cut(s)	450
Lsp1109I	GCAGC	2 cut(s)	437, 454
LweI	GCATC	4 cut(s)	107, 224, 424, 550
MaeI	CTAG	2 cut(s)	350, 453
MalI	GATC	2 cut(s)	354, 477
MboI	GATC	2 cut(s)	352, 475
MboII	GAAGA	3 cut(s)	49, 343, 674
MfeI	CAATTG	2 cut(s)	11, 699
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	8 cut(s)	11, 27, 249, 280, 366, 517, 523, 699
MmeI	TCCRAC	2 cut(s)	380, 695
MnlI	CCTC	4 cut(s)	381, 474, 489, 690
MroXI	GAANNNNTTC	1 cut(s)	584
MseI	TTAA	2 cut(s)	248, 399
MslI	CAYNNNNRTG	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	2 cut(s)	179, 695
MunI	CAATTG	2 cut(s)	11, 699
Mva1269I	GAATGC	2 cut(s)	168, 175
MvaI	CCWGG	2 cut(s)	179, 695
MwoI	GCNNNNNNNGC	4 cut(s)	179, 313, 434, 458
NdeII	GATC	2 cut(s)	352, 475
NlaIII	CATG	3 cut(s)	485, 515, 663
PctI	GAATGC	2 cut(s)	168, 175
PdmI	GAANNNNTTC	1 cut(s)	584
PfeI	GAWTC	1 cut(s)	674
PkrI	GCNGC	2 cut(s)	427, 444
PsiI	TTATAA	1 cut(s)	419
Psp6I	CCWGG	2 cut(s)	177, 693
PspFI	CCCAGC	1 cut(s)	203
PspGI	CCWGG	2 cut(s)	177, 693
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	248, 399
SatI	GCNGC	2 cut(s)	426, 443
Sau3AI	GATC	2 cut(s)	352, 475
ScrFI	CCNGG	2 cut(s)	179, 695
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	5 cut(s)	81, 305, 351, 447, 454
SfaNI	GCATC	4 cut(s)	107, 224, 424, 550
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	8 cut(s)	11, 27, 249, 280, 366, 517, 523, 699
SsiI	CCGC	1 cut(s)	201
SspI	AATATT	2 cut(s)	124, 325
SspMI	CTAG	2 cut(s)	350, 453
StyD4I	CCNGG	2 cut(s)	177, 693
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	89, 230
TasI	AATT	8 cut(s)	11, 27, 249, 280, 366, 517, 523, 699
TfiI	GAWTC	1 cut(s)	674
Tru1I	TTAA	2 cut(s)	248, 399
Tru9I	TTAA	2 cut(s)	248, 399
TscAI	CASTG	2 cut(s)	233, 604
TseI	GCWGC	2 cut(s)	425, 442
TspDTI	ATGAA	3 cut(s)	510, 516, 604
TspRI	CASTG	2 cut(s)	233, 604
XapI	RAATTY	2 cut(s)	27, 280
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	2 cut(s)	350, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.